Sequence of DPV Cotton leaf curl Multan virus
Cotton leaf curl Multan virus isolate FC2 segment DNA-A, complete sequence.
ACC No: HQ455348
Dated: 2011-05-31 | Length: 2738 | CRC: 963634450
ID HQ455348; SV 1; circular; genomic DNA; STD; VRL; 2738 BP.
XX
AC HQ455348;
XX
DT 31-MAY-2011 (Rel. 109, Created)
DT 31-MAY-2011 (Rel. 109, Last updated, Version 1)
XX
DE Cotton leaf curl Multan virus isolate FC2 segment DNA-A, complete sequence.
XX
KW .
XX
OS Cotton leaf curl Multan virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus.
XX
RN [1]
RP 1-2738
RA Feng L., He Z., Li H., Hu X.;
RT ;
RL Submitted (01-NOV-2010) to the INSDC.
RL Plant Quarantine Lab, Guangdong Inspection and Quarantine Technology
RL Center, Huachengdadao No. 66, Guangzhou, Guangdong 510623, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .2738
FT /organism="Cotton leaf curl Multan virus"
FT /segment="DNA-A"
FT /host="Hibiscus rosa-sinensis (Rose Mallow)"
FT /isolate="FC2"
FT /mol_type="genomic DNA"
FT /country="China:Guangdong"
FT /collection_date="Dec-2008"
FT /db_xref="taxon:223252"
FT gene 116. .481
FT /gene="V2"
FT CDS 116. .481
FT /codon_start=1
FT /gene="V2"
FT /product="precoat protein"
FT /protein_id="AEG42023.1"
FT /translation="MWDPLLNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYDLIRDL
FT ICILRSRNYVEASCRYRHFNARVESTSASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQ
FT EAQNISDVQKSGCSKGL"
FT gene 276. .596
FT /gene="V1"
FT misc_feature 276. .596
FT /gene="V1"
FT /note="similar to coat protein"
FT gene complement(1050. .1454)
FT /gene="C3"
FT CDS complement(1050. .1454)
FT /codon_start=1
FT /gene="C3"
FT /product="replication enhancer protein"
FT /protein_id="AEG42024.1"
FT /translation="MDSRTGEPITAAQAGNGAYIWEVPNPLYFKIISHFNRPFTTNMDI
FT LTIRIQFNYNTRKALGLHKCFLTFRIWTTLHPQTGLFLRVFKTQVLKYLNNLGVISINL
FT VIKAVEHVLYNVIQQTMYVDQYSEIEFKLY"
FT gene complement(1147. .1599)
FT /gene="C2"
FT CDS complement(1147. .1599)
FT /codon_start=1
FT /gene="C2"
FT /product="transcriptional activator protein"
FT /protein_id="AEG42025.1"
FT /translation="MRSSSLSKDHCTQLPIKVQHREAKRRNRRRRVDLECGCSYYLSIN
FT CHNHGFTHRGTHHCSSSREWRIYLGGSKSPLFQDNQPLQPSIHDEYGHTHDPNPVQLQH
FT SESSGTAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISEQSRCNFN"
FT gene complement(1496. .2587)
FT /gene="C1"
FT CDS complement(1496. .2587)
FT /codon_start=1
FT /gene="C1"
FT /product="Rep protein"
FT /protein_id="AEG42026.1"
FT /translation="MAPPKRFKIQAKNYFLTYPQCSLTKEEALSQIQAINTPSNKKYIK
FT VCRELHEDGSPHLHVLIQFEGKLICTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKDYI
FT DKDGDTLEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH
FT NLNANLDRIFQEPPAPYVSPFSFSSFDQVPEELQVWALDNVVDAAARPLRPRSIVIEGD
FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW
FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPL
FT YSASNQSTAQGSEETQQEEESRS"
FT gene complement(2128. .2738)
FT /gene="C4"
FT misc_feature complement(2128. .2738)
FT /gene="C4"
FT /note="similar to transcriptional regulator protein"
XX
SQ Sequence 2738 BP; 706 A; 545 C; 644 G; 843 T; 0 other;
hq455348 Length: 2738 31-MAY-2011 Type: N Check: 5910 ..
1 accggatggc cgcgcgattt ttttgtgggc cccctattta tgagattgct
51 ccctcaaagc taaataacgc tcccgcccac tataagtact tgcgcactaa
101 gtttcaaatt caaacatgtg ggatccattg ttaaacgaat ttcctgatac
151 ggtgcacggg tttcggtgta tgctttctgt caaatatttg caacttttgt
201 cgcaggatta ttcaccggat accctaggtt acgatttaat acgggattta
251 atctgtattc tacgttcccg taattatgtc gaagcgagct gcagatatcg
301 tcatttcaac gcccgcgtcg aaagtacgtc ggcgtctgaa cttcggcagc
351 ccatacacca accgtgttgc tgtccccatt gtccgcgtca caaaacaaca
401 ggcatggaca aacaggccta tgaacaggaa gcccagaata tatcggatgt
451 acagaagtcc ggatgttcca aagggttgtg aaggcccatg taaggtacag
501 tcttttgagt ccagacatga tgttgttcat attggtaagg taatgtgtat
551 ttctgatgtt actcgtggtg tcggttttga cccatcgtat tggtaaacgt
601 ttttgtgtca agtcagttta tgttttaggt aagatatgga tggatgaaaa
651 tataaagacc aggaatcaca cgaattcggt catgttcttt ttagttcgcg
701 atcgacgacc tgttgacaaa ccgcaggatt ttggtgaggt attcaatatg
751 tttgataacg aacccagtac agcaactgtg aagaatagtc atagggaccg
801 ttatcaggtg ttgaggaaat ggcatgcaac cgttacgggt ggtcaatatg
851 cgagtaagga acaggctttg gtcaagaagt ttgtcagagt taacaattat
901 gttgtttaca atcaacagga agcaggaaaa tacgagaatc atacggaaaa
951 tgcgttaatg ctttatatgg cttgtaccca cgctagcaac cctgtttatg
1001 ctacgttgaa gattaggata tatttttatg actctgtaac gaattgatgt
1051 taataaagtt tgaattctat ttctgaatat tgatctacat acatagtttg
1101 ttggattaca ttgtacaata catgttctac agctttaata actaaattaa
1151 ttgaaattac accgagattg ttcagatatt tgaggacttg ggttttgaat
1201 acccttaaga aaagaccagt ctgagggtgt aaggtcgtcc agattcggaa
1251 ggttagaaaa cacttgtgca gtcccagagc tttccgagtg ttgtagttga
1301 actggattcg gatcgtgagt atgtccatat tcgtcgtgaa tggacggttg
1351 aagtggctga ttatcttgaa ataaagggga tttggaacct cccagatata
1401 tgcgccattc cctgcttgag ctgcagtgat gggttcccct gtgcgtgaat
1451 ccatggttgt ggcagttgat tgacagataa taagaacacc cgcattcaag
1501 atctactctc ctcctcctgt tgcgtctctt cgcttccctg tgctgtactt
1551 tgattggaag ctgagtacag tggtccttcg agagtgatga agatcgcatt
1601 ttttagggcc caattcttta atgctgtgtt tttttcctcg ttgaggaatt
1651 ccttataact gctgttggga ccaggattgc acaagaagat tgtcggtatt
1701 ccgcctttaa tttgaactgg cttaccgtat tttgtgttgg actgccagtc
1751 tctttgggcc cccatgaact ctttaaagtg tttgaggaaa tgcgggtcga
1801 cgtcatcaat gacgttgtac caggcgtcgt tactgtatac tttgggactc
1851 aggtccagat gtccgcacaa atagttatgt ggtcccaatg acctagccca
1901 catcgtcttt cccgtacgac tatctccctc aattactata ctccgaggtc
1951 taaggggccg cgcagcggca tcgacaacgt tatccaacgc ccaaacttga
2001 agttcttctg gaacttgatc gaacgaagaa aaagaaaaag gagaaacata
2051 aggagctggt ggctcctgaa agatcctgtc tagatttgca tttaaattat
2101 gaaattgtag tacaaaatct ttaggagcta gttccttaat gactctaaga
2151 gcctctgact tacttcccgc gttaagcgct gcggcgtaag cgtcgttggc
2201 tgtctgttgt cctcctcttg ctgatcttcc atcgatctga aactctcccc
2251 actcgagagt gtccccgtcc ttgtcgatgt agtccttgac atctgagctt
2301 gatttagctc cctgaatgtt cggatggaaa tgtgctgacc tggttgggga
2351 taccaggtcg aagaatctgt tattcgtgca gatgagtttg ccctcgaact
2401 ggatgagcac atggagatga gggctcccat cttcgtgtaa ctctctgcag
2451 actttgatgt attttttatt cgagggtgtg ttgatggctt gaatttggga
2501 aagtgcttcc tctttagtga gtgagcactg tggataagtg aggaaataat
2551 ttttggcttg tattttaaaa cgtttggggg gagccattga ctttggtcaa
2601 ttggagacaa ctgattggat tttactctgg caattggaga ctggagacaa
2651 tttatagtgt ctccaaatgg cattatcgta atttgagaaa tcatttcaaa
2701 atcctcacgc tccaaaaagc ggccatccgt ataatatt