Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate ALPA segment M, complete sequence.
ACC No: HQ537114
Dated: 2011-09-07 | Length: 4782 | CRC: -1757685632
ID HQ537114; SV 1; linear; genomic RNA; STD; VRL; 4782 BP.
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AC HQ537114;
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DT 07-SEP-2011 (Rel. 110, Created)
DT 07-SEP-2011 (Rel. 110, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate ALPA segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4782
RX PUBMED; 21635923.
RA Debreczeni D.E., Ruiz-Ruiz S., Aramburu J., Lopez C., Belliure B.,
RA Galipienso L., Soler S., Rubio L.;
RT "Detection, discrimination and absolute quantitation of Tomato spotted wilt
RT virus isolates using real time RT-PCR with TaqMan((R))MGB probes";
RL J. Virol. Methods 176(1-2):32-37(2011).
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RN [2]
RP 1-4782
RA Aramburu J.M., Lopez C., Rubio L., Galipienso L., Soler S.,
RA Debreczeni D.E., Nuez F.;
RT ;
RL Submitted (02-NOV-2010) to the INSDC.
RL Proteccion Vegetal y Biotecnologia, Instituto Valenciano de Investigaciones
RL Agrarias, Ctra. Moncada-Naquera km 5, Moncada, Valencia 46113, Spain
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FH Key Location/Qualifiers
FH
FT source 1. .4782
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="pepper"
FT /lab_host="Datura stramonium"
FT /isolate="ALPA"
FT /mol_type="genomic RNA"
FT /country="Spain:Murcia"
FT /collection_date="2006"
FT /identified_by="Jose Aramburu"
FT /note="Tsw pepper resistance-breaking"
FT /db_xref="taxon:11613"
FT gene 101. .1009
FT /gene="NSm"
FT CDS 101. .1009
FT /codon_start=1
FT /gene="NSm"
FT /product="NSm"
FT /note="putative plant cell-to-cell movement protein"
FT /protein_id="AEN94893.1"
FT /translation="MLTFFGNKGSSKSAKKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDTSKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKINNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCVVIPLNRAIRARSQAFIEACKLIIPKGSSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT gene complement(1291. .4698)
FT /gene="Gn/Gc"
FT CDS complement(1291. .4698)
FT /codon_start=1
FT /gene="Gn/Gc"
FT /product="Gn/Gc precursor"
FT /note="precursor of two virion membrane glycoproteins;
FT proteolitically processed by a host proteinase yielding two
FT glycoproteins; posible functions include virion structure
FT formation and virus transmission by thrips"
FT /protein_id="AEN94894.1"
FT /translation="MRILRLLELVVKVSLFTIALSSVLLAFLIFRATDAKVETIRGDHP
FT EVYDDSAENEVPTAASIQRKAILETLTNLMLESQTPGTRQIREEESTIPIFAEPTTQKP
FT ISVSDLPNNCLNASSLKCEIKGVSTYNVYYQVENNGVIYSCASDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVISFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLIGLITYPILLLINCLWKYFPFKCSNCGNLCIITHECTKICICNKSKA
FT SKEHSSECPILSKETDHDYNKHKWTSMEWFHLIVNTKLSFSLLKFVTEILIGLVILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDTIIESIFGTNIVIEG
FT PNDCIENQNCIAHPSIDNLIKCRLGCEYLDLFRNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLNKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTVFMLNDKTSKTAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENALFQADIQADLHNDGITIGELIAHGPDGHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSITIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKAFSLGKLKIVVDLPSDLFKVAPKGPSITSTRL
FT NCNGCLLCGQGLSCILEFFSDLTFSTSISIDACSLSTYQLAVKKGSNKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVVVEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVILLTAFIFLVIYFCSILTTICKGYVKNESYKSRSKIVDD
FT DDSEIKAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4782 BP; 1547 A; 849 C; 848 G; 1538 T; 0 other;
hq537114 Length: 4782 07-SEP-2011 Type: N Check: 5753 ..
1 agagcaatca gtgcatcaga aatataccta ttatacactt tgctaagaat
51 caatcaatta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactt ttttcggtaa taaggggtct tctaagtctg ccaaaaaaga
151 tgaaggtcct ttagtttcac tagctaaaca taatggtaat gtagaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttgac taaagctatg
251 gatacatcca aaggaaagat actgttgaac acagagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgcaagaat gatagtagat acaaaccacc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaatgg gaagcagaac gctaataagg tcatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacagggaa acttgtggtt
551 gccctagttg atcccaacat gccatctgaa aagcaagtca ttctgaaggg
601 tcaagggaca ataactgatc ctatatgttt tgtcttttat ctgaactggt
651 ctattccaaa aataaataac actccagaaa actgctgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaagggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaggagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtgtggt tatacctcta aacagagcta ttagagctag atctcaagca
851 ttcattgagg cttgcaagct gataattcct aaaggaagca gtgagaagca
901 gattaaaaaa cagcttaaag agctgagctc aaatcttgag agatcagttg
951 aagaagagga ggaagggatt tctgatagtg ttgctcagtt atcttttgat
1001 gaaatatagt acttttaata ccacttattt aagtttaaat ttctgttaat
1051 tttgcatttt aaaatcaaaa aacaaaacaa aaaacaaaaa acaaaaagaa
1101 aaacaaaaaa caaaaaaatc aaaaacagaa aacaaaaaca aaataaggct
1151 gaaaagccaa actttggtcc gaagactctt tttgttgttt tttgtttatt
1201 tgtatttttt gtttgttttt gtttatttta tatatacata atctgactaa
1251 tgtagaaaat tgaatcaaat ttagcctgtg acaagcagtc tcagacaagg
1301 tgagagaaat ccataggtgg ccttcgtctt gtcattgtat ctttcattaa
1351 cataggggct ttgatctcag aatcatcatc atccactatc ttggatctag
1401 atttataaga ttcattcttg acatatcctt tacaaatggt tgttagaata
1451 gaacagaaat aaatcacaag gaaaatgaat gcagtaagca atatcactct
1501 gatagtatca aaaaacgagc caaaataact tgcaatgaaa ttgaatgggc
1551 tcttaatata atcccagaaa ccccatgcag aagaatcaga attatattgt
1601 tgttcttcat gagcatactc atcattttga tctattatgt tctctggttc
1651 ttctacgaca acattattga ccagaacctc cacagaaata tctggattgc
1701 cttctggata caacgtcatt ttcttcttgt ccggattagc agaacaaaac
1751 attgttatgt tgtatttatt tgaccctttt ttaacagcca gttgataagt
1801 agatagagag caagcatcta tagaaattga agtagaaaat gtcaaatccg
1851 agaagaattc taagatgcaa gataaacctt gaccgcatag aagacagccg
1901 ttgcaattta atcttgttga agttatggaa ggtcccttag gagcaacttt
1951 aaaaagatca gatggaaggt caacgacaat cttgagtttg cctaaactga
2001 aagctttttc caagaaaaaa ctagagaaat ctttgaaact aacaggaata
2051 tctgatattt gctctaaacc agatctaaat ctgtatgtgt catatccgca
2101 tgttttaata gtgattgatt ttttccctat tgctgcacaa tcccaagaca
2151 tgtcatctcc ttctagagtt ttcttagtaa aaataggtac tccatcatga
2201 gtcaattgtg ggtgaccaaa cattttgaca ggatcattca agtttgcaat
2251 atttccagaa taaatatggc catcaggtcc atgagctatc agttcaccta
2301 tagtgatacc atcattgtgc agatctgctt gtatatcagc ttgaaacaag
2351 gcattttcat aaggaacctc ttcagtgatc ctcgagcact gacctcctaa
2401 aataccagaa atacaaacat ctgccactat agttgatttt agcactgaat
2451 aaattctgta tgatttatcc atgtcataga tattccgaca gaatccacat
2501 gtagcacctt cattaattgc aaaacaccaa gcttcttcac atccccaata
2551 agaagttggt gttatacaaa aatcttggaa acctgttaaa gcctgatttt
2601 ttctgcaagt gtcacagttt cctgtacaag ttgaataaaa atctgtgtga
2651 gtactttgga taggggctgt tgtgtatttt tctgacactt cataatgaat
2701 tcccacactt ttgatataaa tcacaaattt tttggctgtt ttcgaggtct
2751 tatcattcaa catgaataca gtccctcctc ctcctaaaag agattgttct
2801 atcatgtatc tatatttccc gtctacaaca gaatcaaaga tcaatgattg
2851 tctaggcaga atgttctctg gtatgcttgt ttcatttttg tttagagagt
2901 ctcctgcaat cattccagaa attttgtctg tacgattata agaatctatt
2951 ataccattcc tcaatctctt agcttcatac agaccaaccg atgttaaccc
3001 taaagagctt cctgtataat ctgaaaatcc gttatacaaa ggtttgtttc
3051 taaataaatc taggtattcg caacctaatc tgcattttat aagattatca
3101 atagatgggt gtgcaatgca attctggttc tctatgcaat cattaggacc
3151 ttctataaca atgttagtgc caaagatact ttctataatc gtatcttctt
3201 ttacattaca gtaacattga tctttttcag ggcatttttc aaatttgctt
3251 gtaaccaaaa acggacagcc tggaacataa aaacacccac ttaaacattg
3301 ggtagtttga gccatagaca tgggcatttg agacaaaatg accaaaccta
3351 ttaagatttc agtcacaaat ttcagcaaac taaagctcag cttagtgttc
3401 actattagat ggaaccattc catgctagtc cacttatgtt tgttgtagtc
3451 atgatctgtt tctttggaca atatgggaca ctctgaagaa tgttcttttg
3501 aagctttgct tttgttgcag atgcaaattt tagtacattc atgtgtgatt
3551 atgcacaaat tgccacagtt agaacattta aatggaaaat atttccataa
3601 gcaatttatg agcaacaaaa tagggtatgt gatcaagcct ataagatcat
3651 accagagaaa gaggggtttg gttgtcttgt ttactaacca ccggataggg
3701 aaatagatca acaaagctat caatattaat cttatccaag aaaaattgat
3751 gcaggctgtt tgtttataaa tgctttttga atatttgatt atgcaatctc
3801 taactctttt gtttgttttt ggtattttag ctgatttgtc accgcacaag
3851 agattgtgct caccatccaa catttcctca gtaaaagtga tgcttgctga
3901 tccggaaaaa gatatgacct tgtgttccac attttcacca ggctttttta
3951 tcaaataacc catgatcttc tcagggctag tgatgctaac agtgtaggga
4001 ttagcaaagt ttgatttagt tattttgcag tcgccagata acttcacagt
4051 ttgtaatgat actgttccat tagtagggta cgagttataa gttataggat
4101 aattatcttg tgtcaggctt tctgaaatga agaattttgt tccaactgaa
4151 aaatgccttt tgttgtcaag tttagtaatg ggaataaccg ggactttaga
4201 gaatcttttt ggcagattta aagaattgtc acatttttct aaaccttctg
4251 ctgaatcaga agcacaggaa tatatgacac cattattttc cacttgataa
4301 taaacattat aagtggatac cccttttatc tcacatttta atgaagaagc
4351 attcaagcag ttgttaggaa gatccgagac agaaatcggt ttttgcgtag
4401 ttggttcagc aaaaataggg atggttgatt cttcttctcg tatctggcgg
4451 gttccaggag tctgagattc tagcatcaga ttagttaaag tctccaagat
4501 agccttgcgt tgaattgatg cagcagtggg tacttcattc tcagcagaat
4551 catcataaac ctcaggatgg tctccacgaa ttgtttctac tttggcatct
4601 gtggctctga agatcaagaa tgccaacaag acagaactca gggcaattgt
4651 gaaaagactc acttttacca ctagttctag tagtcttaaa attctcatct
4701 tagacgtctg ctcagattat aatggttata tgattaattt caagatgtct
4751 ggattaaggt ttttgtttgc actgattgct ct