Sequence of DPV Banana streak CA virus
Banana streak CA virus, complete genome.
ACC No: HQ593111
Dated: 2011-05-04 | Length: 7408 | CRC: -774563417
ID HQ593111; SV 1; circular; genomic DNA; STD; VRL; 7408 BP.
XX
AC HQ593111;
XX
DT 04-MAY-2011 (Rel. 108, Created)
DT 04-MAY-2011 (Rel. 108, Last updated, Version 1)
XX
DE Banana streak CA virus, complete genome.
XX
KW .
XX
OS Banana streak CA virus
OC Viruses; Retro-transcribing viruses; Caulimoviridae; Badnavirus.
XX
RN [1]
RP 1-7408
RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.;
RT "Molecular characterisation of six badnavirus species associated with leaf
RT streak disease of banana in East Africa";
RL Ann. Appl. Biol. 158(3):346-353(2011).
XX
RN [2]
RP 1-7408
RA James A.P., Geijskes R.J., Dale J.L., Harding R.M.;
RT ;
RL Submitted (07-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL Centre for Tropical Crops and Biocommodities, Queensland University of
RL Technology, 2 George St, Brisbane, Queensland 4001, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .7408
FT /organism="Banana streak CA virus"
FT /host="Musa sp."
FT /mol_type="genomic DNA"
FT /country="Kenya"
FT /collection_date="Apr-2009"
FT /db_xref="taxon:1016852"
FT CDS 515. .1045
FT /codon_start=1
FT /product="hypothetical protein"
FT /note="ORF I protein"
FT /protein_id="AEC49885.1"
FT /translation="MVEKTWDQKFQEFLDSSELTQAQLEYLDLADSKVSNKDLAHNLRI
FT NTYRLSLTGKVLWTSERKNRELILQVIEEQKDQRRQLEELQNLSKIVRNQRSDLKRALE
FT KLDVLSEELQALRKDYLKRRPLNKEDVEDLVVRISEQPKFIEKQTEALTEELTREVQHL
FT KGIIHDFERKLMG"
FT CDS 1042. .1446
FT /codon_start=1
FT /product="virion associated protein"
FT /note="ORF II protein"
FT /protein_id="AEC49886.1"
FT /translation="MSNTVTNSAIYQQAITGTTGDWESPGVGIAEKGSVSNTQITRQLN
FT TVIYLIVRLQQENLALKDTIADIQNRVKTIEGKSGTTSSGTPTLKSEIDSINNKLTRIE
FT QIKSSQPKKDSGTSAAKVFQDPYNLLRNLK"
FT CDS 1446. .6956
FT /codon_start=1
FT /product="polyprotein"
FT /note="encodes movement protein, coat protein, aspartic
FT protease, reverse transcriptase and RNase H; ORF III"
FT /protein_id="AEC49887.1"
FT /translation="MASRPRVTGSGSRTQTVAEAGTPLIDDQIREYRSSRRAAYEAQRV
FT ARQAGNIIGRIVGRQPREHTLSMVVNPNSELSRSLAHRARTVPGEVLYMTQRDSPVNRV
FT YRNRTEERMLVTNGQQDRSFIYPESFEELVNAGFEYIHLGVLQVRLQIMHRTYAGTMAL
FT VVFRDTRWTQEGDEDRSIIAAMEADLSQGHQLIYVIPDIMMTIKDFYQHVQISILTKGY
FT QGFQGEANLLITRSCRCRLTNVPNVGFAYNIQKVVEYLNSKGVKAIQAQKLSTKKFQGT
FT EWNIKPSNVVVPMQPASMITRVNYDSSRSIRFGDYQASTSTAPPRYNNDGDSDDEIQET
FT INMLYIEDDLEDDYPAAEEEQVLLEDMVGEEDIISKFLEELELSDDDTKSQVSQQVMNL
FT EEEDFPQLQEIERLLSTTAESAISSYRPPDVDMSGIAPGYAPATSTTGWAGNNQFPFTT
FT RRPRRWDSNNEFYMLPPAQSKQGAMFIMPLDFDVKVFERWESITLLHMTERSFDNADDK
FT MRYMENLLGEDEKKHFIEWRMKYTTEYETMKAQALGDQGTQNIINQMRLIFFLENPQVG
FT TTTSQDAAYKTLKSLVCTEMTDTAIYRYMNDYFHLSAKTGRAWATEELSKEFFTKLPRG
FT LGDEVEKAFKEKHPSNTIGVTARITFTKRYLKELCEKVALQKSIGKMDFCRNTPVHGLY
FT GRERSHKRYGARKSTSYKGKPHKSHVRIGKKKHLAARKRNCRCYACGEEGHFASECTNQ
FT KKIIDRVRVLDSLDLEDGLDVVSVGFDEDDVSDIYSIDEEAENNKFTNEDMEDFKNYEV
FT YMMEAEELDEPKEYLVGEPSEWRSKMRVSRRQYYCKHDWKFEESHRTICRACGSEAVHK
FT HRIDCLKCDMTICLMCQPWFYKDINTEEVKKTRVRIERVIDWKEIALRQHEVLKTSIAN
FT EKQLSEENEELKEKIKELKGKELITVEEISEEEGAAMIEKIENLEKENELLNAIITQKE
FT EEEVGYLNKIQELEERIRKLEQQMKYRDEEMQVILKQQREEKVNALEEVSVNALRPRNN
FT HLNIRCEVEIKEKKVILNAILDTGATVCVADSRMIPAEMREQAKNRIIIRGVNGVTEVN
FT EVTAIGRLWVGKQWFTLPQTFIMPTLGDGVHMIIGMNFIRTVGLRIENGEVTIYKIMTT
FT VPAPPIAHDLNYIEELELELYEYYDICATQNQRGEIAEEFIEPAMMTRMKKLGYIGEEP
FT LKHWTKNQVKCRIEVKNPDMIIEDKPLKHVTPAMKETMAKHVKKLLELKVIRPSQSKHR
FT TTAMIVESGTEIDPVTGKEKRGKERLVFNYKRLNDNTEKDQYSLPGINTIIKRIGNAKI
FT YSKFDLKSGFHQVAMDPESIPWTAFWAIDGLYEWLVMPFGLKNAPAIFQRKMDNCFRGT
FT EKFIAVYIDDILVFSETVQQHKEHLKKFMEICERNGLVLSPTKMKIGTRQVDFLGATIG
FT NSKIKLQPHIIQKIAETKDEELKEFRGLRRWLGILNYARSYIPNLGKILGPLYSKTNPN
FT GERRMNRQDWVIVDKIKDLVKNLPELELPPNNAMMIIETDGCMEGWGGVCKWKEQSGQP
FT RWSEKICAYASGKFNPIKSTIDAEIQAVINSLDKFKIYYLDKKELIIRTDSQAIVSFYK
FT KSSDHKPSRVRWLAFTDYITGTGLDVKFEHIDGKDNVLADTLSRLVKIICHKEKHPSET
FT ILINVAEEILQKGSIGAKRKLGEMISGYEAWMTRIQEHKIKTLTLIEKPIFKCGCRKPA
FT RLHTSRTSRNPGREFYSCENKACFTWVWKDQIDEYVQEVMTWNDQVSQLSEEPEGHNEG
FT CTIEDAFDLLDVSNDDQWARS"
XX
SQ Sequence 7408 BP; 2687 A; 1271 C; 1762 G; 1688 T; 0 other;
hq593111 Length: 7408 04-MAY-2011 Type: N Check: 1104 ..
1 tggtatcaga gcaaggttag ttcttatggc tttcatgggg taaaaccctt
51 aggtaggagc cgatgggctc tgctattttt gatttgggtt aatggttgta
101 caagttctat gatagataag tcgaatggag caacacttat gtatgaaaaa
151 tgattgccta tgataataga tgggctaagg tgtaaggaaa aatgatcaca
201 aggtcgattc tatttgtttt ccaaaagatc atgcctaccc aagaagtacc
251 tatgagaggg aagatagtgg ttctcgcatg agtgaggaag aaatatcata
301 gatagacagt gaactccgtg aactacttac atgcttagct gatatcctat
351 ttagtaaggc agacaccgtg aagtagtaca tgataagctc cagtaagacg
401 taatatcatt ggaacctctg tgactgacca ggtacgccaa tagaaaatag
451 tatcccggag ggctactcct accttgttta tcataagaaa gtcatccacc
501 ttgcaaaacg gtttatggtt gagaaaactt gggatcaaaa gttccaggaa
551 ttcttagatt catctgaact tactcaagct caacttgagt acctagatct
601 agctgactct aaggtctcaa acaaagattt ggctcataac ctgagaatca
651 atacttatcg actaagcctg accggtaaag tcctttggac ttcggaaagg
701 aagaatcgtg agttaatatt gcaggttatc gaagagcaaa aggaccagag
751 aaggcaatta gaagaattgc aaaacctcag taagattgtg cgcaatcaac
801 gtagcgatct gaagcgggct ctcgagaagt tggacgtctt gtctgaggag
851 ctccaagctc tcaggaaaga ctatctgaag agacgaccct tgaacaaaga
901 agacgttgag gacttagtcg tgcgaatctc tgaacaaccc aagttcatag
951 agaagcagac tgaggctctg actgaagaac tcacaaggga ggttcagcat
1001 ctgaaaggaa ttattcatga ctttgagcga aagctcatgg gatgagtaat
1051 acggtgacaa actctgctat ttaccagcag gctatcactg gtacaaccgg
1101 tgattgggaa tctccaggag ttggaattgc tgagaaggga tctgtgagta
1151 acacccagat cacaaggcag ttgaacacgg tcatatactt gatcgttagg
1201 ctgcaacagg aaaatcttgc tctcaaggac acgattgcgg atattcagaa
1251 tcgtgtgaag actattgaag gcaaatcggg gactacctca tctggcaccc
1301 caacactgaa aagtgagatt gactccatca acaacaagct cacaagaatt
1351 gagcaaatta agtcaagtca accaaagaag gatagtggca catcagccgc
1401 caaagtcttc caagacccat ataatctgct cagaaatcta aagtaatggc
1451 atcaagaccc agagtgactg gttctggctc cagaacccag accgttgctg
1501 aggcaggaac acctctgatc gatgatcaga tcagggaata tcgaagctcc
1551 agaagagcag catatgaagc gcagagagtt gctaggcaag ctggcaacat
1601 cattggaaga attgttggaa ggcaaccaag agaacatact ctctcgatgg
1651 ttgtaaatcc aaactcagag ctaagcagaa gccttgcaca tagggctaga
1701 acagtaccag gagaagtact gtatatgact caaagagaca gtcctgtcaa
1751 cagagtatac agaaacagga cagaagaaag gatgctcgta accaatggac
1801 agcaggatag atctttcata tatcctgaat cttttgaaga gctagtcaat
1851 gcaggatttg agtacatcca cttgggtgta ttacaagtta gactgcaaat
1901 tatgcacaga acatatgctg gaacaatggc tctagttgtc ttcagagaca
1951 ctagatggac acaagaagga gatgaagata gatccattat agctgcaatg
2001 gaagctgatc tatcacaagg ccatcagttg atatatgtca tcccagatat
2051 tatgatgaca ataaaggatt tctatcagca tgtgcaaatc agtatcctga
2101 ctaaagggta ccagggattc caaggagaag caaaccttct aatcacaaga
2151 agttgcagat gtaggctaac caatgtgcca aatgttggtt ttgcttataa
2201 tattcagaag gttgttgaat atctgaattc aaaaggggta aaggctatac
2251 aagcccagaa gctgagtaca aagaagttcc aaggcacaga atggaacatc
2301 aagccatcaa atgtggttgt gccaatgcaa ccagcaagta tgatcaccag
2351 ggtcaattat gatagctcca gaagtatcag atttggtgat tatcaggcta
2401 gtacatccac agcaccccca agatacaata atgatggtga ttctgatgat
2451 gaaatacaag agaccatcaa catgttatat attgaagatg atcttgaaga
2501 tgattatccc gcagctgaag aagaacaagt tcttcttgaa gacatggtgg
2551 gagaggagga catcatttca aaattcctcg aagaacttga gttatccgat
2601 gatgacacta aatctcaggt gtcacagcaa gtgatgaact tagaagaaga
2651 ggatttccct cagctacaag agattgaaag gttgctatca acaacggcag
2701 aatcagcaat aagctcatac aggccgcctg atgttgatat gagtggaata
2751 gcaccaggat atgcaccagc aacgagcaca actggatggg ctggaaataa
2801 ccagttccca tttacaacaa gaagaccaag aaggtgggat tcaaacaatg
2851 agttctatat gctaccacca gcacaaagca agcagggagc aatgttcatc
2901 atgccccttg attttgatgt taaggtattt gaaagatggg agagtatcac
2951 cctcctacac atgacagaga gaagctttga caacgctgat gataaaatga
3001 gatacatgga gaatctgcta ggagaggatg agaagaagca tttcattgaa
3051 tggagaatga agtatactac agagtatgaa acaatgaagg ctcaagctct
3101 aggagatcaa ggaactcaga atattatcaa tcaaatgaga ttaatattct
3151 tcctagagaa tcctcaagtt ggaacaacta catcacaaga tgccgcatac
3201 aagacattga agagtctggt ctgtacagaa atgacagata cagcaatcta
3251 tagatacatg aatgactact tccatttgtc agccaagaca ggaagagcat
3301 gggcaactga agaattatca aaagaattct ttacaaagct accaagagga
3351 cttggtgatg aagttgaaaa ggcattcaaa gaaaaacacc ctagtaacac
3401 tattggggtt acagcaagaa tcacatttac caagagatac cttaaagaat
3451 tatgtgagaa ggttgctctg caaaagagta taggaaaaat ggatttctgt
3501 agaaatacac cagtccatgg attatatggc agagaaagat cacacaagag
3551 gtatggagca aggaagagta catcctacaa gggaaagcca cacaaatccc
3601 atgttaggat tggaaagaag aaacaccttg ctgcaagaaa aagaaactgc
3651 agatgttatg catgtggcga ggaagggcac ttcgcaagtg agtgcacaaa
3701 ccaaaagaag atcattgata gagtgagagt cctggattca ctggacttag
3751 aagatggttt ggatgtggtt tcagtcggct ttgatgaaga tgatgtctca
3801 gacatatact caattgatga agaggctgaa aacaacaagt ttacaaatga
3851 agatatggag gacttcaaaa actatgaagt ctatatgatg gaagcagaag
3901 agcttgatga accaaaggaa tatctagtcg gagaaccatc tgagtggaga
3951 tcaaaaatga gagtctcaag gagacaatat tattgcaagc atgattggaa
4001 gttcgaagag agccacagaa caatatgtag agcatgtgga tctgaagcag
4051 ttcacaaaca cagaatagat tgtcttaagt gtgatatgac aatctgttta
4101 atgtgtcagc catggttcta taaagacatc aacactgaag aagtcaagaa
4151 gacgagagta aggatagaga gagtgattga ttggaaggag atagcactaa
4201 ggcagcatga agtgctaaag acaagcattg caaatgagaa gcagctctca
4251 gaagaaaatg aagaattaaa ggagaaaata aaagagttaa aaggaaagga
4301 gctgatcaca gttgaagaga tatcagaaga agaaggtgca gcaatgatag
4351 agaagataga aaatctggaa aaagagaatg agctacttaa tgccataata
4401 actcagaaag aagaagaaga agttggatat ctcaacaaga ttcaagagct
4451 agaagagaga atcagaaaac ttgagcaaca aatgaagtat agagatgaag
4501 aaatgcaagt aattctcaag caacaaaggg aagagaaagt aaatgctctt
4551 gaagaagtat cagtaaatgc tctcagacca agaaacaacc atctcaatat
4601 cagatgtgaa gttgagatta aagagaagaa agtgatattg aatgcaatcc
4651 ttgacacagg agcaacagtt tgtgtcgcag actcaaggat gataccagca
4701 gagatgagag agcaagcaaa gaatagaatc ataatcagag gagtaaatgg
4751 agtcacagaa gtgaatgagg tcacagctat aggaaggcta tgggtaggaa
4801 aacaatggtt taccctgcca caaacattta tcatgccaac attaggagat
4851 ggagtgcaca tgataattgg tatgaacttc atcagaacag ttgggctgag
4901 gatagaaaat ggagaagtta caatctacaa gattatgaca acagtcccag
4951 ctccaccaat tgcacacgac ctcaattaca tagaagaatt ggagttagaa
5001 ttatatgaat attatgatat ctgtgcaaca cagaatcaga ggggagaaat
5051 tgcagaagaa ttcatcgagc cagcgatgat gacaagaatg aagaagttag
5101 gctatattgg tgaagaaccc cttaagcact ggaccaaaaa tcaagtaaag
5151 tgcaggattg aagtcaagaa tccagacatg attattgaag ataagccatt
5201 gaagcatgta acgccagcaa tgaaggagac aatggcaaaa catgtcaaga
5251 agctgttgga gctcaaggtg ataagaccat cacaatcaaa acatagaaca
5301 acagcaatga ttgtggagtc aggaacagaa attgatccag ttactggaaa
5351 ggagaaaaga ggaaaagaaa gattggtatt caattataaa agattgaatg
5401 ataatacaga gaaagaccag tacagcctgc cagggatcaa cacaatcatc
5451 aagagaattg ggaatgcaaa aatatatagc aaatttgatt tgaagagcgg
5501 atttcatcaa gtcgctatgg atccggaatc aatcccatgg acagcatttt
5551 gggcaattga tgggttatat gaatggcttg tcatgccatt tggtttgaaa
5601 aatgctccag ctatattcca gagaaaaatg gacaattgtt tcagaggcac
5651 agagaagttc attgcagtat atattgatga tatattggta ttctcagaaa
5701 cagtccagca gcataaagag catttgaaga agttcatgga aatttgtgaa
5751 agaaatgggt tagttctgag cccaacaaag atgaagattg gaacaagaca
5801 agtggatttc ctaggagcaa caattggaaa ttccaagatc aagcttcagc
5851 cacatataat tcagaagata gcagaaacaa aagatgaaga actgaaagaa
5901 ttcagagggt taagaagatg gctaggaatt ctgaattatg ccagaagcta
5951 cattcctaat ctaggaaaaa tacttgggcc attatactcg aagaccaacc
6001 caaacggtga aagaaggatg aataggcaag attgggtgat tgttgataaa
6051 atcaaagatt tggtcaagaa tttgccagag ctagagctac ctccaaacaa
6101 tgccatgatg ataattgaga cagatggttg catggaaggt tggggaggag
6151 tttgtaaatg gaaggaacaa tcaggacagc caagatggtc agaaaagatt
6201 tgtgcttatg caagtggaaa gttcaatcca attaagagca caattgatgc
6251 agagattcaa gcagtcatca atagcttgga taaattcaag atatattatc
6301 ttgataagaa agaattgatc atcagaacgg acagtcaagc aatagtcagc
6351 ttctacaaga agagcagtga ccacaaaccc tcaagggtaa gatggttagc
6401 tttcactgac tatatcactg gaacaggatt ggatgtgaag tttgaacata
6451 ttgacggcaa ggataatgtg ctagcagaca ctctgtcaag gctagtaaaa
6501 atcatatgtc ataaggagaa acatccatca gagacaatat tgatcaacgt
6551 cgcagaagaa atacttcaga aaggaagtat tggagcaaag agaaaactgg
6601 gagaaatgat aagtggatat gaagcatgga tgacgaggat ccaggaacat
6651 aaaatcaaga cgctaacact tatcgaaaaa ccaattttta aatgtggttg
6701 caggaaaccg gctaggcttc acacgtctag aacatcaaga aatcctggaa
6751 gagaattcta ttcatgtgaa aacaaagcat gtttcacctg ggtatggaag
6801 gatcaaattg atgagtacgt tcaagaggtg atgacgtgga acgatcaagt
6851 gagccagttg tcagaagaac cagaaggcca caacgaagga tgcacaattg
6901 aagacgcatt cgatctgcta gacgtcagca atgacgatca atgggcaagg
6951 tcgtaagcaa tgacgtagcg gaagtgatgg accccatacc actggatggc
7001 actaaccagt gtgacaggga tatgagatgc caagtgagct ggatagcact
7051 cactttatgt aaagagtggt ctgcgtacca actccactat agtctgtctg
7101 aggtgcgatg ctgtgtcacg cacagagact ttagattcct ttgcgtgaga
7151 tgtacgcaaa gcggtaggtc cagaggtgtg ctgtgacgcg tcccttgcat
7201 tattggtggg tgcacctaac gatgcgggaa gccgaactcc ctctataaat
7251 aggacccttg tattcagttg caagcacgca aaaacaacgc gagcttactt
7301 ctgagaagaa ataagaacta tttgtgcttg aaatacacct tgtgtcaaga
7351 gtgtgagtag agtgtgagta gagcgcaaga tccgtgttgg gaattccgcc
7401 cgtcgttc