Sequence of DPV Tobacco mosaic virus

Tobacco mosaic virus isolate TMV-Minoodasht coat protein (CP) mRNA, complete cds.

ACC No: HQ593620

Dated: 2012-08-21 | Length: 645 | CRC: 2069767243

                
ID   HQ593620; SV 1; linear; mRNA; STD; VRL; 645 BP.
XX
AC   HQ593620;
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DT   20-FEB-2011 (Rel. 107, Created)
DT   21-AUG-2012 (Rel. 113, Last updated, Version 4)
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DE   Tobacco mosaic virus isolate TMV-Minoodasht coat protein (CP) mRNA,
DE   complete cds.
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KW   .
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OS   Tobacco mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC   Tobamovirus.
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RN   [1]
RP   1-645
RA   Alishiri A., Rakhshandehroo F.;
RT   ;
RL   Submitted (02-NOV-2010) to the INSDC.
RL   Plant Pathology, College of Agriculture and Natural Resources, Science and
RL   Research Branch, Islamic Azad University, Pounak Square- Simun Bulivar
RL   Street-Hesarak Avenue, Tehran 14515-775, Iran
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FH   Key             Location/Qualifiers
FH
FT   source          1. .645
FT                   /organism="Tobacco mosaic virus"
FT                   /host="eggplant"
FT                   /isolate="TMV-Minoodasht"
FT                   /mol_type="mRNA"
FT                   /country="Iran"
FT                   /collected_by="A. Alishiri"
FT                   /collection_date="15-Sep-2009"
FT                   /identified_by="A. Alishiri"
FT                   /PCR_primers="fwd_name: TMV spec, fwd_seq:
FT                   cggtcagtgccgaacaagaa, rev_name: Tob-Uni 1, rev_seq:
FT                   atttaagtggasggaaaavcact"
FT                   /note="acronym: TMV"
FT                   /db_xref="taxon:12242"
FT   gene            1. .645
FT                   /gene="CP"
FT   CDS             74. .553
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /db_xref="GOA:F1CWF9"
FT                   /db_xref="InterPro:IPR001337"
FT                   /db_xref="UniProtKB/TrEMBL:F1CWF9"
FT                   /protein_id="ADX62310.1"
FT                   /translation="MSYGITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV
FT                   QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT
FT                   TAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT"
XX
SQ   Sequence 645 BP; 195 A; 123 C; 141 G; 185 T; 1 other;

hq593620 Length: 645  21-AUG-2012  Type: N  Check: 5418  ..

       1  atgagtttta aaagaataat ttaatcgatg aggattcgga gacttctgtc
      51  gccgaaacgg attcgtttta aatatgtctt acggaattac tactccatct
     101  cagttcgtgt tcttgtcatc agcgtgggcc gacccaatag agttaataaa
     151  tttatgtact aatgccttag gtaatcagtt ccaaacacaa caagctcgaa
     201  ctgtcgttca acgacaattc agcgaggtgt ggaaaccgtc accacaagta
     251  actgtcagat tccctgatag tgactttaaa gtgtataggt acaacgcagt
     301  attagaccct ctagttactg cactattagg tgcttttgat actagaaata
     351  gaataataga agttgaaaat caggcaaacc cgacgactgc cgaaacgtta
     401  gatgctactc gtagagtaga tgacgcgacg gtggccataa ggagcgcaat
     451  aaataattta atagtagaat tgatcagagg aactggatca tataatcgga
     501  gctctttcga gagctcttct ggtttggttt ggacctctgg tcctgcaact
     551  tgaggtagtc aagttgcttg ataaataacg gattgtgtcc gtaatcacac
     601  gtggtgcgta cgataacgca tagtgttttt ccntccactt aaata