Sequence of DPV Trichomonas vaginalis virus 1
Trichomonas vaginalis virus 1 strain TVV1-UR1, complete genome.
ACC No: HQ607513
Dated: 2011-05-08 | Length: 4684 | CRC: -358378484
ID HQ607513; SV 1; linear; genomic RNA; STD; VRL; 4684 BP. XX AC HQ607513; XX DT 08-MAY-2011 (Rel. 108, Created) DT 08-MAY-2011 (Rel. 108, Last updated, Version 1) XX DE Trichomonas vaginalis virus 1 strain TVV1-UR1, complete genome. XX KW . XX OS Trichomonas vaginalis virus 1 OC Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus. XX RN [1] RP 1-4684 RX DOI; 10.1128/JVI.00220-11. RX PUBMED; 21345965. RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W., RA Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H., RA Singh B.N., Fichorova R.N., Nibert M.L.; RT "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by RT Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)"; RL J. Virol. 85(9):4258-4270(2011). XX RN [2] RP 1-4684 RA Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A., RA Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.; RT ; RL Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases. RL Department of Microbiology and Molecular Genetics, Harvard Medical School, RL Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA XX FH Key Location/Qualifiers FH FT source 1. .4684 FT /organism="Trichomonas vaginalis virus 1" FT /host="Trichomonas vaginalis" FT /strain="TVV1-UR1" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="Jun-1999" FT /db_xref="taxon:674953" FT gene 326. .4616 FT /gene="pol" FT CDS join(326. .2352,2354. .4616) FT /codon_start=1 FT /gene="pol" FT /product="RNA-dependent RNA polymerase" FT /note="translated via ribosomal frameshift" FT /protein_id="AED99812.1" FT /translation="MEASANGLSHDDNANKSQNVGPSTLPGSDKQGGENHENSFNSFSN FT DFFFNFLRTSTSTHISDSPGVSFVSKDGTPYTSATIQSAVGRLTHNVVASAVQLNITAN FT NTLEVDYGFGQDVSRATGTITIPIFDGEKYKEVARALSLVFSKKGMALDVTSQTVQDTL FT MNSDLTIATVAAGYYTALAARHELTKEASVAAHRIPFVTALSDTFTAADNAQRSSHVIS FT SCLRCPASNNAQRQVTVGTNMWTNVSVENLAVQGAAIPNPNDVSFFIPNKALPSSWWCA FT IWLLNAFLHSFVAQTRFHIFITPGETYNLAPFTDADIYEAIPVLLAMSKSSRPVPESVE FT SMLYAYGTQMVIQPHSLYTEGGIIRKMIFTVPHLPAHGYFVTNAEYSRYMNIAVPNDPR FT TAKDYIIGVGTGLLQVILAYQAAFSCGGPIALHWHANDAISHGMDTVAAAYLEGRYFTI FT PMAINVATNIAQYTTGVRADPQYKHSLDRILPRIFGPSTDTVFNFIESAITSSWVSINA FT TKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVEYLTNGGDLR FT NCPILRTLKAAEAEETVTFMCTGKIGSIFAIDGTMRTFKRYQTIDLAELGWTSHGKVMK FT PYAFRAPVIQGITVCKTAYTSTAIDIVTTVFGPLRLRVGTLLSKAVRCGPIIPSVKHHF FT NIRRIITVKRNGNEYVFIPGYGWVLQDDYLVNSVKMTGEDQLPPNQLPYGDDLLLIYSE FT ILLYNYISLFPKFRYKNPDLLNQETELQLFPLKTDSAARNKANFYARSLWNEAKTDKTA FT FKPGTYNDTVAGLLMWQQCALMWSLPRSVINRTISGVCDALTERTSLALLKRISDWLKQ FT LGLACSPIHRLFIELPTLLGRGAIPGDSVKDMKHRLKFDPSITVDVPRDQLHDLIYRLL FT SRNLHITNVESFDHHLEERLLWSKSGSHYYPDEEVNRLLPNQPTRKEFLDVVTVDYIKE FT CKPQVFIRQSRKLEHGKERFIYNCDTVSYVYFDFILKLFEAGWQDSEAILSPGDYTGER FT LHARISSYKYKAMLDYTDFNSQHTIRSMRLIFETMKELLPPETTFALDWCIASFDNMYT FT SDGHKWVSTLPSGHRATTFINTVLNWCYTQMVGLKFNSFMCAGDDVILLSQEPISLVPI FT LTSHFKFNPSKQSTGTRGEFLRKHYTSEGVFAYPARAIASLVSGNWLSQSLRENTPILV FT PIQNGIDRLRSRAGLLGVPWILGLSELTEREAVPRDVSMALLNSHAAGPGLITRNYSSF FT TVTPKPPTLTSTLEYTATRYGVQDLSKHVPWEQLTLEERNKLGKQIKKMSHRHCSQAKI FT TYTCVHEVYKPSGLPKVLSGASQPSLSMVWWQAMLKEAMQDNSTKKIDAQMFASSACTD FT RVSGDAFLQASAKAAGVLITSLIQSSS" FT gene 326. .2362 FT /gene="cap" FT CDS 326. .2362 FT /codon_start=1 FT /gene="cap" FT /product="capsid protein" FT /protein_id="AED99811.1" FT /translation="MEASANGLSHDDNANKSQNVGPSTLPGSDKQGGENHENSFNSFSN FT DFFFNFLRTSTSTHISDSPGVSFVSKDGTPYTSATIQSAVGRLTHNVVASAVQLNITAN FT NTLEVDYGFGQDVSRATGTITIPIFDGEKYKEVARALSLVFSKKGMALDVTSQTVQDTL FT MNSDLTIATVAAGYYTALAARHELTKEASVAAHRIPFVTALSDTFTAADNAQRSSHVIS FT SCLRCPASNNAQRQVTVGTNMWTNVSVENLAVQGAAIPNPNDVSFFIPNKALPSSWWCA FT IWLLNAFLHSFVAQTRFHIFITPGETYNLAPFTDADIYEAIPVLLAMSKSSRPVPESVE FT SMLYAYGTQMVIQPHSLYTEGGIIRKMIFTVPHLPAHGYFVTNAEYSRYMNIAVPNDPR FT TAKDYIIGVGTGLLQVILAYQAAFSCGGPIALHWHANDAISHGMDTVAAAYLEGRYFTI FT PMAINVATNIAQYTTGVRADPQYKHSLDRILPRIFGPSTDTVFNFIESAITSSWVSINA FT TKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVEYLTNGGDLR FT NCPILRTLKAAEAEETVTFMCTGKIGSIFAIDGTMRTFKRYQTIDLAELGWTSHGKVMK FT PYAFRAPVIQGITVCKTAYTSTAIDIVTTVFGPLRLRVGTLFE" XX SQ Sequence 4684 BP; 1356 A; 1204 C; 943 G; 1181 T; 0 other; hq607513 Length: 4684 08-MAY-2011 Type: N Check: 1601 .. 1 gcaaaaagag ggagtcaccc actttcctct ttttgcaccc caacattgtc 51 acctcatcat gacgaactca taacgcggac acataacaag cgtagtgtcc 101 tcgacgattg ccatcctcgt gtgaattccg ggctccgctt gcactgatgg 151 tacctcttac gaaacttgga gagacttcgg cctcgaagag cggtaatgta 201 ccctctgcgc ctgggaccta atggcgtttt tgctgtaggg atttttcagt 251 ggtagaaaga ttaggggtta aacatcctgg ttcgctaggt ttgtccttaa 301 ctttactcag ctgatgggaa tacccatgga ggcttctgct aatgggttat 351 cacatgatga taatgcgaat aaatcgcaaa atgttggacc ttctactctt 401 ccggggtcag ataaacaagg aggagaaaac cacgaaaatt cttttaattc 451 tttttcaaat gatttctttt ttaatttttt acgcacatct acgagtactc 501 atatttcaga cagtccagga gtttctttcg tctcaaagga tggaacacct 551 tacacatcag ccaccatcca gtccgcagtc ggtcgtctta cacataatgt 601 cgtcgcatca gcagtccagc tcaacattac agccaacaat acgttagagg 651 tggactacgg ttttggccaa gacgtctcaa gagctacagg aaccatcaca 701 atcccgatct ttgatggtga aaagtacaaa gaggtagctc gcgccttatc 751 attagttttc agcaagaagg gtatggcgct cgacgttaca tctcaaactg 801 ttcaagacac cctcatgaac tccgatctca caattgctac cgtcgctgct 851 ggatattaca cagctttagc cgctcgccat gaactcacaa aagaagcaag 901 cgtcgcagcc catcgtattc ctttcgttac agccttatca gacacgttca 951 cagctgcaga caacgcgcaa cgctcaagcc acgtcatctc ttcttgcttg 1001 cgctgccctg cctcgaataa cgctcaacgc caagtcacag tcggtacgaa 1051 tatgtggacg aatgtttccg tcgaaaatct tgcagtacaa ggcgctgcaa 1101 tcccaaatcc aaacgatgta tcattcttca ttccgaacaa agccctccca 1151 tcttcttggt ggtgcgcaat ctggcttctc aacgcttttc ttcacagctt 1201 cgtcgcgcag actcgtttcc acatcttcat tacaccaggt gaaacctaca 1251 atcttgcgcc gttcacagat gccgatatct acgaagcgat ccctgttttg 1301 ctcgcgatgt caaaatcatc gcgtcctgtt ccagagagcg tcgaaagtat 1351 gctctacgcc tacggcaccc agatggttat ccaaccacac tcgctctata 1401 cggagggcgg cataattagg aaaatgatct ttaccgtccc acaccttcca 1451 gcacacggct atttcgtaac aaacgctgaa tactcgagat acatgaacat 1501 cgctgttcca aacgacccac gtacagccaa agattacata attggagtcg 1551 gcaccggtct cttacaggtc atacttgctt accaagccgc cttcagctgt 1601 ggtggtccaa tcgctctcca ctggcacgcc aacgacgcta tctcacatgg 1651 tatggatact gttgcagctg cttacctcga aggaagatac ttcaccatcc 1701 caatggctat caacgttgcg acgaatattg cccaatatac tacaggagtt 1751 agggcagatc cacagtacaa acattcactc gaccggatct taccacgcat 1801 tttcggtccg tcgacagaca cagttttcaa cttcatcgaa tccgcgatca 1851 catcttcttg ggtctcaatc aatgctacga aacgcaacgg ccgtgccaga 1901 aagttcagga cggctttcat caaccgcttt catgatccag aattcgctta 1951 catgttcggc attactggca atggcatcga gcggatggaa ggtaaagtca 2001 cgtcgaacat cgcacaggaa gttgaatacc tcaccaacgg tggtgacctt 2051 cgcaactgcc caattcttcg caccttaaag gctgctgaag cagaagagac 2101 cgtcactttc atgtgtacgg gaaagatcgg ttccatcttc gcgatcgatg 2151 gtacaatgcg cacattcaaa cggtaccaaa cgatcgacct cgctgaactc 2201 ggatggacgt cacacggcaa ggtcatgaaa ccatacgctt tcagagcccc 2251 agtcatccaa ggaatcaccg tctgcaagac agcttacaca tccacagcta 2301 tcgacatcgt cacaacagtc ttcggcccct tacgccttcg cgtaggcacc 2351 ctttttgagt aaggctgtac gttgtggccc tataatacca tccgtcaagc 2401 atcacttcaa cataagacgc atcataacag ttaaacgtaa tggtaatgaa 2451 tacgtattta tcccaggtta cggatgggta ttacaggatg attatttggt 2501 gaattccgtc aagatgactg gtgaagatca actacctcct aaccagttac 2551 cttatggcga tgatctttta cttatatatt cagaaatttt actttataat 2601 tacatatctc tttttcccaa gttcagatac aagaatccag acttattaaa 2651 tcaagaaaca gaattacaac ttttcccact taaaaccgac tcagctgcca 2701 gaaataaagc caatttttat gctagatcac tatggaatga agcaaaaaca 2751 gacaaaacag ctttcaaacc aggaacctac aatgacacag tagcaggtct 2801 attgatgtgg caacaatgtg ctctcatgtg gtcactgcct cgctcagtta 2851 tcaacagaac aattagcggc gtttgtgatg cgttaaccga aaggacttca 2901 ctcgcgctat taaaacgtat ctcagattgg ttgaaacaac tcgggctggc 2951 ttgctcacca atccatcgct tattcataga actcccaaca ctattaggac 3001 gcggagcaat tccaggcgat agtgtaaagg atatgaagca cagactcaag 3051 ttcgacccat ctataacagt agatgtccca agagaccagt tacacgatct 3101 aatctacaga ctcttatcaa gaaatcttca cataaccaac gttgagagct 3151 tcgatcacca tctagaagag cgtctgcttt ggtctaaatc cggaagtcat 3201 tactatcccg acgaggaagt caatagatta cttcccaatc aacccacaag 3251 gaaagaattc ttagacgtcg taaccgtaga ctacatcaag gaatgcaagc 3301 ctcaggtttt cataagacaa tcacgtaagc tagaacacgg caaagaacgt 3351 ttcatctaca actgcgacac agtctcatac gtctattttg attttatcct 3401 gaaactcttt gaggcaggat ggcaagatag cgaagcaata ctgtcgccag 3451 gtgactacac tggtgaacgc ttacacgcaa gaatttctag ctacaaatac 3501 aaggctatgc tcgattacac ggatttcaat tctcagcata caatccgaag 3551 catgcgactg atattcgaaa ctatgaagga gttactacca cctgaaacca 3601 cctttgctct cgactggtgt atcgcctcat tcgataacat gtacacatcc 3651 gatggccaca aatgggtctc gactctccca agcggacatc gagctactac 3701 cttcatcaac acagtattaa attggtgcta cacacaaatg gtcggtctca 3751 agttcaacag ttttatgtgc gccggtgatg atgtcatttt attgtctcaa 3801 gagccaatat cactggtccc cattcttaca tcacatttca agttcaatcc 3851 cagtaaacaa agtacaggta ctagaggtga attcttacgc aagcattaca 3901 cctcagaagg cgtgtttgca tacccggcac gagcaattgc aagcttagta 3951 agcggaaatt ggttaagcca atctttaaga gagaacactc caattttggt 4001 cccaatacaa aacggaatcg acagacttcg aagcagagct ggtttactcg 4051 gagtcccttg gatcttaggc ctctcggagc tcacagagcg agaagccgtt 4101 cctagggatg tcagcatggc tctgttaaat tcacacgctg caggaccagg 4151 tttgatcaca cggaattaca gttctttcac cgttaccccg aaaccaccta 4201 cgctaactag tacactcgag tacacagcaa cccgttacgg tgtccaagac 4251 ctgtccaaac acgtaccatg ggaacaactt acattggaag aacgtaataa 4301 gttaggaaaa caaattaaga aaatgagtca caggcattgt agccaggcaa 4351 agataacata cacttgtgtt cacgaagttt acaaaccaag tggcctcccc 4401 aaggtgttat ctggtgccag ccaaccatcg ttgtcgatgg tgtggtggca 4451 ggcaatgctt aaggaagcaa tgcaagacaa ctctactaag aagatagatg 4501 cacaaatgtt cgcttcgagt gcatgtacag accgcgtcag cggtgatgca 4551 ttcttgcaag cgagcgcaaa agctgctggt gtactaatca ctagcttgat 4601 tcaatcttct tcataacgta cagcaaaaaa agtctctata gttgctcaag 4651 acatatatga gccagatggc cctgctatac cttc