Sequence of DPV Trichomonas vaginalis virus 1

Trichomonas vaginalis virus 1 strain TVV1-UR1, complete genome.

ACC No: HQ607513

Dated: 2011-05-08 | Length: 4684 | CRC: -358378484

                
ID   HQ607513; SV 1; linear; genomic RNA; STD; VRL; 4684 BP.
XX
AC   HQ607513;
XX
DT   08-MAY-2011 (Rel. 108, Created)
DT   08-MAY-2011 (Rel. 108, Last updated, Version 1)
XX
DE   Trichomonas vaginalis virus 1 strain TVV1-UR1, complete genome.
XX
KW   .
XX
OS   Trichomonas vaginalis virus 1
OC   Viruses; dsRNA viruses; Totiviridae; Trichomonasvirus.
XX
RN   [1]
RP   1-4684
RX   DOI; 10.1128/JVI.00220-11.
RX   PUBMED; 21345965.
RA   Goodman R.P., Freret T.S., Kula T., Geller A.M., Talkington M.W.,
RA   Tang-Fernandez V., Suciu O., Demidenko A.A., Ghabrial S.A., Beach D.H.,
RA   Singh B.N., Fichorova R.N., Nibert M.L.;
RT   "Clinical Isolates of Trichomonas vaginalis Concurrently Infected by
RT   Strains of Up to Four Trichomonasvirus Species (Family Totiviridae)";
RL   J. Virol. 85(9):4258-4270(2011).
XX
RN   [2]
RP   1-4684
RA   Goodman R.P., Freret T.S., Kula T., Geller A.M., Demidenko A.A.,
RA   Talkington M.W.T., Ghabrial S.A., Singh B.N., Fichorova R.N., Nibert M.L.;
RT   ;
RL   Submitted (12-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL   Department of Microbiology and Molecular Genetics, Harvard Medical School,
RL   Armenise Building, Room 523, 200 Longwood Avenue, Boston, MA 02115, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4684
FT                   /organism="Trichomonas vaginalis virus 1"
FT                   /host="Trichomonas vaginalis"
FT                   /strain="TVV1-UR1"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="Jun-1999"
FT                   /db_xref="taxon:674953"
FT   gene            326. .4616
FT                   /gene="pol"
FT   CDS             join(326. .2352,2354. .4616)
FT                   /codon_start=1
FT                   /gene="pol"
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="translated via ribosomal frameshift"
FT                   /protein_id="AED99812.1"
FT                   /translation="MEASANGLSHDDNANKSQNVGPSTLPGSDKQGGENHENSFNSFSN
FT                   DFFFNFLRTSTSTHISDSPGVSFVSKDGTPYTSATIQSAVGRLTHNVVASAVQLNITAN
FT                   NTLEVDYGFGQDVSRATGTITIPIFDGEKYKEVARALSLVFSKKGMALDVTSQTVQDTL
FT                   MNSDLTIATVAAGYYTALAARHELTKEASVAAHRIPFVTALSDTFTAADNAQRSSHVIS
FT                   SCLRCPASNNAQRQVTVGTNMWTNVSVENLAVQGAAIPNPNDVSFFIPNKALPSSWWCA
FT                   IWLLNAFLHSFVAQTRFHIFITPGETYNLAPFTDADIYEAIPVLLAMSKSSRPVPESVE
FT                   SMLYAYGTQMVIQPHSLYTEGGIIRKMIFTVPHLPAHGYFVTNAEYSRYMNIAVPNDPR
FT                   TAKDYIIGVGTGLLQVILAYQAAFSCGGPIALHWHANDAISHGMDTVAAAYLEGRYFTI
FT                   PMAINVATNIAQYTTGVRADPQYKHSLDRILPRIFGPSTDTVFNFIESAITSSWVSINA
FT                   TKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVEYLTNGGDLR
FT                   NCPILRTLKAAEAEETVTFMCTGKIGSIFAIDGTMRTFKRYQTIDLAELGWTSHGKVMK
FT                   PYAFRAPVIQGITVCKTAYTSTAIDIVTTVFGPLRLRVGTLLSKAVRCGPIIPSVKHHF
FT                   NIRRIITVKRNGNEYVFIPGYGWVLQDDYLVNSVKMTGEDQLPPNQLPYGDDLLLIYSE
FT                   ILLYNYISLFPKFRYKNPDLLNQETELQLFPLKTDSAARNKANFYARSLWNEAKTDKTA
FT                   FKPGTYNDTVAGLLMWQQCALMWSLPRSVINRTISGVCDALTERTSLALLKRISDWLKQ
FT                   LGLACSPIHRLFIELPTLLGRGAIPGDSVKDMKHRLKFDPSITVDVPRDQLHDLIYRLL
FT                   SRNLHITNVESFDHHLEERLLWSKSGSHYYPDEEVNRLLPNQPTRKEFLDVVTVDYIKE
FT                   CKPQVFIRQSRKLEHGKERFIYNCDTVSYVYFDFILKLFEAGWQDSEAILSPGDYTGER
FT                   LHARISSYKYKAMLDYTDFNSQHTIRSMRLIFETMKELLPPETTFALDWCIASFDNMYT
FT                   SDGHKWVSTLPSGHRATTFINTVLNWCYTQMVGLKFNSFMCAGDDVILLSQEPISLVPI
FT                   LTSHFKFNPSKQSTGTRGEFLRKHYTSEGVFAYPARAIASLVSGNWLSQSLRENTPILV
FT                   PIQNGIDRLRSRAGLLGVPWILGLSELTEREAVPRDVSMALLNSHAAGPGLITRNYSSF
FT                   TVTPKPPTLTSTLEYTATRYGVQDLSKHVPWEQLTLEERNKLGKQIKKMSHRHCSQAKI
FT                   TYTCVHEVYKPSGLPKVLSGASQPSLSMVWWQAMLKEAMQDNSTKKIDAQMFASSACTD
FT                   RVSGDAFLQASAKAAGVLITSLIQSSS"
FT   gene            326. .2362
FT                   /gene="cap"
FT   CDS             326. .2362
FT                   /codon_start=1
FT                   /gene="cap"
FT                   /product="capsid protein"
FT                   /protein_id="AED99811.1"
FT                   /translation="MEASANGLSHDDNANKSQNVGPSTLPGSDKQGGENHENSFNSFSN
FT                   DFFFNFLRTSTSTHISDSPGVSFVSKDGTPYTSATIQSAVGRLTHNVVASAVQLNITAN
FT                   NTLEVDYGFGQDVSRATGTITIPIFDGEKYKEVARALSLVFSKKGMALDVTSQTVQDTL
FT                   MNSDLTIATVAAGYYTALAARHELTKEASVAAHRIPFVTALSDTFTAADNAQRSSHVIS
FT                   SCLRCPASNNAQRQVTVGTNMWTNVSVENLAVQGAAIPNPNDVSFFIPNKALPSSWWCA
FT                   IWLLNAFLHSFVAQTRFHIFITPGETYNLAPFTDADIYEAIPVLLAMSKSSRPVPESVE
FT                   SMLYAYGTQMVIQPHSLYTEGGIIRKMIFTVPHLPAHGYFVTNAEYSRYMNIAVPNDPR
FT                   TAKDYIIGVGTGLLQVILAYQAAFSCGGPIALHWHANDAISHGMDTVAAAYLEGRYFTI
FT                   PMAINVATNIAQYTTGVRADPQYKHSLDRILPRIFGPSTDTVFNFIESAITSSWVSINA
FT                   TKRNGRARKFRTAFINRFHDPEFAYMFGITGNGIERMEGKVTSNIAQEVEYLTNGGDLR
FT                   NCPILRTLKAAEAEETVTFMCTGKIGSIFAIDGTMRTFKRYQTIDLAELGWTSHGKVMK
FT                   PYAFRAPVIQGITVCKTAYTSTAIDIVTTVFGPLRLRVGTLFE"
XX
SQ   Sequence 4684 BP; 1356 A; 1204 C; 943 G; 1181 T; 0 other;

hq607513 Length: 4684  08-MAY-2011  Type: N  Check: 1601  ..

       1  gcaaaaagag ggagtcaccc actttcctct ttttgcaccc caacattgtc
      51  acctcatcat gacgaactca taacgcggac acataacaag cgtagtgtcc
     101  tcgacgattg ccatcctcgt gtgaattccg ggctccgctt gcactgatgg
     151  tacctcttac gaaacttgga gagacttcgg cctcgaagag cggtaatgta
     201  ccctctgcgc ctgggaccta atggcgtttt tgctgtaggg atttttcagt
     251  ggtagaaaga ttaggggtta aacatcctgg ttcgctaggt ttgtccttaa
     301  ctttactcag ctgatgggaa tacccatgga ggcttctgct aatgggttat
     351  cacatgatga taatgcgaat aaatcgcaaa atgttggacc ttctactctt
     401  ccggggtcag ataaacaagg aggagaaaac cacgaaaatt cttttaattc
     451  tttttcaaat gatttctttt ttaatttttt acgcacatct acgagtactc
     501  atatttcaga cagtccagga gtttctttcg tctcaaagga tggaacacct
     551  tacacatcag ccaccatcca gtccgcagtc ggtcgtctta cacataatgt
     601  cgtcgcatca gcagtccagc tcaacattac agccaacaat acgttagagg
     651  tggactacgg ttttggccaa gacgtctcaa gagctacagg aaccatcaca
     701  atcccgatct ttgatggtga aaagtacaaa gaggtagctc gcgccttatc
     751  attagttttc agcaagaagg gtatggcgct cgacgttaca tctcaaactg
     801  ttcaagacac cctcatgaac tccgatctca caattgctac cgtcgctgct
     851  ggatattaca cagctttagc cgctcgccat gaactcacaa aagaagcaag
     901  cgtcgcagcc catcgtattc ctttcgttac agccttatca gacacgttca
     951  cagctgcaga caacgcgcaa cgctcaagcc acgtcatctc ttcttgcttg
    1001  cgctgccctg cctcgaataa cgctcaacgc caagtcacag tcggtacgaa
    1051  tatgtggacg aatgtttccg tcgaaaatct tgcagtacaa ggcgctgcaa
    1101  tcccaaatcc aaacgatgta tcattcttca ttccgaacaa agccctccca
    1151  tcttcttggt ggtgcgcaat ctggcttctc aacgcttttc ttcacagctt
    1201  cgtcgcgcag actcgtttcc acatcttcat tacaccaggt gaaacctaca
    1251  atcttgcgcc gttcacagat gccgatatct acgaagcgat ccctgttttg
    1301  ctcgcgatgt caaaatcatc gcgtcctgtt ccagagagcg tcgaaagtat
    1351  gctctacgcc tacggcaccc agatggttat ccaaccacac tcgctctata
    1401  cggagggcgg cataattagg aaaatgatct ttaccgtccc acaccttcca
    1451  gcacacggct atttcgtaac aaacgctgaa tactcgagat acatgaacat
    1501  cgctgttcca aacgacccac gtacagccaa agattacata attggagtcg
    1551  gcaccggtct cttacaggtc atacttgctt accaagccgc cttcagctgt
    1601  ggtggtccaa tcgctctcca ctggcacgcc aacgacgcta tctcacatgg
    1651  tatggatact gttgcagctg cttacctcga aggaagatac ttcaccatcc
    1701  caatggctat caacgttgcg acgaatattg cccaatatac tacaggagtt
    1751  agggcagatc cacagtacaa acattcactc gaccggatct taccacgcat
    1801  tttcggtccg tcgacagaca cagttttcaa cttcatcgaa tccgcgatca
    1851  catcttcttg ggtctcaatc aatgctacga aacgcaacgg ccgtgccaga
    1901  aagttcagga cggctttcat caaccgcttt catgatccag aattcgctta
    1951  catgttcggc attactggca atggcatcga gcggatggaa ggtaaagtca
    2001  cgtcgaacat cgcacaggaa gttgaatacc tcaccaacgg tggtgacctt
    2051  cgcaactgcc caattcttcg caccttaaag gctgctgaag cagaagagac
    2101  cgtcactttc atgtgtacgg gaaagatcgg ttccatcttc gcgatcgatg
    2151  gtacaatgcg cacattcaaa cggtaccaaa cgatcgacct cgctgaactc
    2201  ggatggacgt cacacggcaa ggtcatgaaa ccatacgctt tcagagcccc
    2251  agtcatccaa ggaatcaccg tctgcaagac agcttacaca tccacagcta
    2301  tcgacatcgt cacaacagtc ttcggcccct tacgccttcg cgtaggcacc
    2351  ctttttgagt aaggctgtac gttgtggccc tataatacca tccgtcaagc
    2401  atcacttcaa cataagacgc atcataacag ttaaacgtaa tggtaatgaa
    2451  tacgtattta tcccaggtta cggatgggta ttacaggatg attatttggt
    2501  gaattccgtc aagatgactg gtgaagatca actacctcct aaccagttac
    2551  cttatggcga tgatctttta cttatatatt cagaaatttt actttataat
    2601  tacatatctc tttttcccaa gttcagatac aagaatccag acttattaaa
    2651  tcaagaaaca gaattacaac ttttcccact taaaaccgac tcagctgcca
    2701  gaaataaagc caatttttat gctagatcac tatggaatga agcaaaaaca
    2751  gacaaaacag ctttcaaacc aggaacctac aatgacacag tagcaggtct
    2801  attgatgtgg caacaatgtg ctctcatgtg gtcactgcct cgctcagtta
    2851  tcaacagaac aattagcggc gtttgtgatg cgttaaccga aaggacttca
    2901  ctcgcgctat taaaacgtat ctcagattgg ttgaaacaac tcgggctggc
    2951  ttgctcacca atccatcgct tattcataga actcccaaca ctattaggac
    3001  gcggagcaat tccaggcgat agtgtaaagg atatgaagca cagactcaag
    3051  ttcgacccat ctataacagt agatgtccca agagaccagt tacacgatct
    3101  aatctacaga ctcttatcaa gaaatcttca cataaccaac gttgagagct
    3151  tcgatcacca tctagaagag cgtctgcttt ggtctaaatc cggaagtcat
    3201  tactatcccg acgaggaagt caatagatta cttcccaatc aacccacaag
    3251  gaaagaattc ttagacgtcg taaccgtaga ctacatcaag gaatgcaagc
    3301  ctcaggtttt cataagacaa tcacgtaagc tagaacacgg caaagaacgt
    3351  ttcatctaca actgcgacac agtctcatac gtctattttg attttatcct
    3401  gaaactcttt gaggcaggat ggcaagatag cgaagcaata ctgtcgccag
    3451  gtgactacac tggtgaacgc ttacacgcaa gaatttctag ctacaaatac
    3501  aaggctatgc tcgattacac ggatttcaat tctcagcata caatccgaag
    3551  catgcgactg atattcgaaa ctatgaagga gttactacca cctgaaacca
    3601  cctttgctct cgactggtgt atcgcctcat tcgataacat gtacacatcc
    3651  gatggccaca aatgggtctc gactctccca agcggacatc gagctactac
    3701  cttcatcaac acagtattaa attggtgcta cacacaaatg gtcggtctca
    3751  agttcaacag ttttatgtgc gccggtgatg atgtcatttt attgtctcaa
    3801  gagccaatat cactggtccc cattcttaca tcacatttca agttcaatcc
    3851  cagtaaacaa agtacaggta ctagaggtga attcttacgc aagcattaca
    3901  cctcagaagg cgtgtttgca tacccggcac gagcaattgc aagcttagta
    3951  agcggaaatt ggttaagcca atctttaaga gagaacactc caattttggt
    4001  cccaatacaa aacggaatcg acagacttcg aagcagagct ggtttactcg
    4051  gagtcccttg gatcttaggc ctctcggagc tcacagagcg agaagccgtt
    4101  cctagggatg tcagcatggc tctgttaaat tcacacgctg caggaccagg
    4151  tttgatcaca cggaattaca gttctttcac cgttaccccg aaaccaccta
    4201  cgctaactag tacactcgag tacacagcaa cccgttacgg tgtccaagac
    4251  ctgtccaaac acgtaccatg ggaacaactt acattggaag aacgtaataa
    4301  gttaggaaaa caaattaaga aaatgagtca caggcattgt agccaggcaa
    4351  agataacata cacttgtgtt cacgaagttt acaaaccaag tggcctcccc
    4401  aaggtgttat ctggtgccag ccaaccatcg ttgtcgatgg tgtggtggca
    4451  ggcaatgctt aaggaagcaa tgcaagacaa ctctactaag aagatagatg
    4501  cacaaatgtt cgcttcgagt gcatgtacag accgcgtcag cggtgatgca
    4551  ttcttgcaag cgagcgcaaa agctgctggt gtactaatca ctagcttgat
    4601  tcaatcttct tcataacgta cagcaaaaaa agtctctata gttgctcaag
    4651  acatatatga gccagatggc cctgctatac cttc