Sequence of DPV GRSV and TCSV reassortant
Groundnut ringspot and Tomato chlorotic spot virus reassortant segment M, complete sequence.
ACC No: HQ644141
Dated: 2011-05-01 | Length: 4848 | CRC: 467676579
ID HQ644141; SV 1; linear; genomic RNA; STD; VRL; 4848 BP.
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AC HQ644141;
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DT 26-APR-2011 (Rel. 108, Created)
DT 01-MAY-2011 (Rel. 108, Last updated, Version 2)
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DE Groundnut ringspot and Tomato chlorotic spot virus reassortant segment M,
DE complete sequence.
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KW .
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OS Groundnut ringspot and Tomato chlorotic spot virus reassortant
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4848
RX PUBMED; 21382631.
RA Webster C.G., Reitz S.R., Perry K.L., Adkins S.;
RT "A natural M RNA reassortant arising from two species of plant- and
RT insect-infecting bunyaviruses and comparison of its sequence and biological
RT properties to parental species";
RL Virology 413(2):216-225(2011).
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RN [2]
RP 1-4848
RA Vanderspool C., Webster C.G., Adkins S.;
RT ;
RL Submitted (22-NOV-2010) to the EMBL/GenBank/DDBJ databases.
RL Agricultural Research Service, United States Horticultural Research
RL Laboratory, 2001 South Rock Road, Fort Pierce, FL 34945, USA
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FH Key Location/Qualifiers
FH
FT source 1. .4848
FT /organism="Groundnut ringspot and Tomato chlorotic spot
FT virus reassortant"
FT /segment="M"
FT /host="Solanum lycopersicum"
FT /isolate="LGMTSG"
FT /mol_type="genomic RNA"
FT /country="USA:FL"
FT /collection_date="Feb-2010"
FT /db_xref="taxon:1027232"
FT gene 100. .1011
FT /gene="NSm"
FT CDS 100. .1011
FT /codon_start=1
FT /gene="NSm"
FT /product="nonstructural movement protein"
FT /protein_id="AEB90409.1"
FT /translation="MLTFFGSKKPSESEKTDEGPLVSLTKRNGNVEVSRSWSQSNEKEA
FT LAKNMDVSKGKILLNTEGTSSLGTYESDSITESEGYDLAARMIVDTNHHISNWKNDLFV
FT GNGKQNATKIIKICPTWDSRKQYMMVSRIVIWICPTIPDPTGKLLIALIDPNMPSDKQV
FT ILKGQGTITDPICFVFYLNWSIPKANNTPENCCQLHLMCSQEYKKGVSFASVMYSWTKE
FT FCDSPRADKDKCCTVIPLNRAIRARSQAFIEACKLIIPKGNSAKQIKKQLKDLSTNLEK
FT SVEEEEEGVCDNIAKLSFVDEI"
FT gene complement(1360. .4764)
FT /gene="GnGc"
FT CDS complement(1360. .4764)
FT /codon_start=1
FT /gene="GnGc"
FT /product="glycoprotein precursor protein"
FT /protein_id="AEB90410.1"
FT /translation="MRLIKLLELMIKLSLFAIALSSVLLSILLFRATDAKVEIIRGDHP
FT EIYDDSSENEVSTTSLMLRRTVPEVLPDGNFKAHSDKSRIERAEKQAPVLQDETGTEKA
FT VSIQEVPNNCLNASLKCEIKGVSTYNVYYQVENNGVICSCVSDSADNLGRCDNSQNLPK
FT KFPEIPVIPITKLDNKRHFSVGTKFFITENLASSNYPVSYNLHQTEGIVSLQTVKLSGD
FT CKITKSNFANPYTVSITSPEKIMGYIIKRPGEDGEHKVMAFSGSVSITFSEEMLDGNHN
FT LLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVNK
FT TTKPLFLWYDLIGLITYPLLLILNYLWKYFPFKCANCGNLCIVTHECTKKCICNKSKAS
FT REHFSECPILSKEPDHEYNKYKWTSMEWFHLIINTKLSLSLLKFITEVLIGLIILSQMP
FT MSMAQTAQCLNGCFYVPGCNQMVTSKFEKCPEANQCFCSVRKEKIVESIFGTNIVIEGP
FT NDCIANQDCLESSPMDTFIKCRLGCEYLELSRNKPLFNSFVDYTGSSLGLTSASLYMTK
FT RLRNGIIDSYNVTDKISGIVAGDSLKQNETSIPENILPRQSLIFDSVIDGKYRYMIEQS
FT LLGGGGTVFMLNDKTSGAAKKFTIYIRSTGIHYEVSEKYTTAPIMSTHTDYYSTCTGNC
FT DTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNVYDMDKSYRIYSVLK
FT STIIADVCISGILGDQCTKISEEVPYENSVFQADIQADLHNDGITVGELIAHGPDSHIY
FT AGNIANLNDPVKMFGHPQLSHDGVPIFTKKTLSGEDMSWDCAAIGKKSVTIKSCGYDTY
FT RFKSGLEQISDIPVTFKDLSSFFLEKTFSLGKLKMVIDLPSDLFKVAPKKPSITSTRLE
FT CNGCLLCGKGLSCNFEFFSDLVFSTSISVESCSLSSYQLAVKKGSNKYNITMYCSVNPD
FT KKKIKMYPEGNPELSVEVPINTVVVKDPENIIDQNDEYAHEEQQYNSDSSAWGFWDYIK
FT SPFNFVASYFGSFFDTIRVILLIAFIFLVIYLCSMLVSMCRGYVKNGSYKIRSKIEDDD
FT DMEIKEPMMVRDTMTRRRPPMDFSHLV"
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SQ Sequence 4848 BP; 1526 A; 914 C; 876 G; 1532 T; 0 other;
hq644141 Length: 4848 01-MAY-2011 Type: N Check: 1648 ..
1 agagcaatca gtgcgtcaga aatataccta taatacactt tgcaagaata
51 aatcaattac attacacaag ctcctctgcc gtaggctgtt gaaatcaaca
101 tgttgacatt tttcggcagc aagaaaccct ctgagtctga aaagacagat
151 gaaggtccct tggtttcatt gaccaaacgc aatgggaatg ttgaagtctc
201 tagatcatgg tctcaatcta atgagaaaga agctctggca aaaaatatgg
251 atgtatctaa aggtaagata ttattaaaca ctgaaggaac ttcctctcta
301 ggaacctatg agtcagactc tatcacagaa tcagagggtt atgatctagc
351 tgcaagaatg atagtggata caaaccatca tatttccaac tggaaaaatg
401 atttgtttgt tggcaacggg aagcagaatg caactaagat cattaagata
451 tgccctacat gggatagcag aaagcaatac atgatggttt caaggattgt
501 gatatggatt tgtccaacca taccagaccc tacaggcaag ctcttaatag
551 cattaattga ccctaacatg ccttctgaca agcaggtgat tctaaagggt
601 cagggaacaa taacagatcc aatatgcttt gttttttatc taaactggtc
651 tatcccaaaa gcgaacaaca cacctgaaaa ctgctgtcag ctgcatttaa
701 tgtgcagcca agagtataaa aaaggagtct catttgcaag tgtcatgtac
751 tcatggacaa aagaattttg tgattctcca agagctgata aagataagtg
801 ttgcactgtt atacccttaa atagagctat ccgggctagg tcccaagcct
851 ttattgaagc ctgcaagcta ataatcccaa agggcaatag tgcaaaacaa
901 attaagaagc agcttaaaga tcttagtacc aacctggaga aatctgttga
951 agaagaagaa gaaggtgttt gtgataacat tgccaaactt tcgtttgtgg
1001 acgagatata gtatcatgct gtttcatctt gatagataat taaaagtatt
1051 ttattctgaa cgtagcaagt ccacaagtat ctataaaaat caatctcgaa
1101 gtcaagtata attacaatta aacaaaaaat ccaaaaaaat ctgaaaacca
1151 aaaatcaaaa atccaaaaaa atctaaaaac caggaaaaca aacaaaaaca
1201 aaacaaataa ggctgaaaag ccaaatttgg cccgaaggct cttttttttg
1251 gtttttttag atatatacat atatatgtat atgtatttat atattcattt
1301 tattagtttt tattttattt tatgtagttt taatcagcaa ttaatttgaa
1351 catgcaattt taaaccagat gagagaagtc cataggtggt cttcttctcg
1401 tcattgtgtc tctaaccatc ataggttcct taatttccat gtcatcgtca
1451 tcttcaatct tagatcgaat tttataggaa ccgtttttaa catatcctcg
1501 acacatggaa accagcatag aacataaata gattaccagg aagataaagg
1551 ctataagcag tataactctg atagtgtcga agaaagatcc gaaataactg
1601 gcaacaaaat tgaaaggact cttgatataa tcccaaaaac cccatgcaga
1651 agaatctgaa ttatactgtt gttcttcgtg agcgtactca tcattctgat
1701 ctatgatgtt ttcaggatct ttaactacta ctgtgttaat tgggacttcc
1751 acagaaagtt caggattccc ttctggatac attttgatct tcttcttatc
1801 tggattaacc gagcaataca ttgttatgtt atacttattt gatcctttct
1851 tcacagctaa ttgatagctg gatagagaac aagattccac agagattgag
1901 gtagagaaca ccaagtctga aaagaactca aaattgcaag acaagccttt
1951 cccacataaa agacagccgt tgcattctaa tctagttgaa gttatagatg
2001 gcttctttgg agctacttta aagagatcag aaggaagatc tattaccatt
2051 ttcagtttcc ctaagctgaa tgttttctct aaaaagaagc tggaaagatc
2101 tttgaaggta acaggaatat ctgatatctg ttccaatcca gatttgaacc
2151 tatatgtgtc ataaccacag gattttatgg tgaccgactt cttacctatc
2201 gctgcacaat cccaagacat atcttcccct gaaagggttt tcttagtgaa
2251 gataggcaca ccatcatgac tcaactgtgg atgcccaaac attttcacag
2301 gatcatttaa gttggcaatg ttccctgcat atatatgact atcaggtcca
2351 tgagctatta gttcacctac agttattcca tcattgtgca aatctgcttg
2401 tatatcggct tggaaaacag agttttcgta aggtacttct tcagagattt
2451 tggtacattg atctcctaaa atgccagaaa tgcatacgtc ggctattata
2501 gtagatttta agacagaata gatcctgtaa gatttatcca tgtcataaac
2551 atttctgcaa aagccacaag ttgctccttc gttaatggca aagcaccatg
2601 cttcctcaca gccccagtaa gatgttggtg taatgcaaaa gtcttggaaa
2651 ccggtcaaag cttgattttt tctacatgta tcacaattgc cagtgcaagt
2701 cgagtaataa tctgtgtgag tgctcatgat aggagctgtc gtgtactttt
2751 cagaaacttc ataatggatt cctgtgctcc ttatgtaaat tgtaaacttc
2801 tttgctgctc cagaggtttt atcattcaac atgaacacag ttccgcctcc
2851 tccaagtaga gattgttcta tcatgtatct gtatttaccg tctatgacag
2901 aatcaaagat taatgattgg cgaggtaata tattctcagg tatacttgtc
2951 tcattctgct tcagagagtc tccagctact attcctgaaa ttttatctgt
3001 cacattatat gagtctatta tgccattcct caatcttttt gtcatgtata
3051 agcttgcaga ggttagccct aaagagcttc ctgtgtaatc cacaaaacta
3101 ttgaataagg gtttattccg agatagctcc aaatattcac aacctaatct
3151 gcactttatg aaagtgtcca tagggctgct ttccaggcaa tcttgattag
3201 caatacaatc attaggtcct tcaattacaa tgttagtccc gaaaatgctt
3251 tctactattt tctccttcct aacactgcag aagcattgat ttgcttctgg
3301 gcacttttca aacttgctag taaccatttg attacaccct ggaacgtaaa
3351 aacagccgtt tagacattga gctgtttgag ccattgacat gggcatttga
3401 gacagtataa tcaaccctat gagaacttct gtgataaatt tgagtaagct
3451 caggctaagt tttgtgttta ttatcaggtg aaaccattcc atgctagtcc
3501 atttgtattt gttatattca tgatctggtt cctttgaaag tatagggcat
3551 tctgaaaaat gctctcttga agctttgctt ttgttgcaaa tgcatttttt
3601 tgtgcattca tgcgtaacaa tgcataagtt gccacagttg gcacacttga
3651 acggaaaata tttccacaga taatttaaaa tcaacagcaa agggtaagtg
3701 atcaagccta taagatcata ccacaaaaac agaggcttgg tggtcttatt
3751 caccaaccag cgtatgggga aatatatcaa caatgcaatc aaaattagac
3801 gtatccaaga gaaattgatg caagctgttt gtttgtagat gctcttagaa
3851 tacttaatta tgcaatctct gactctttta tttgttttag gaatttttgc
3901 tgatttatca ccgcacaaga gattatgatt tccgtctaac atttcctcac
3951 taaacgttat actaactgat ccagaaaaag ccatgacttt gtgctctcca
4001 tcttctcccg gtctcttgat gatatagccc ataattttct ctgggctagt
4051 gatgctcacg gtgtatggat tggcaaaatt agatttagtt atcttgcaat
4101 cacctgaaag cttaacagtc tgcaatgaaa caataccttc agtttgatgt
4151 agattatagg aaaccgggta attactagag gctaggttct cagtgataaa
4201 gaactttgtt ccaacagaaa aatgcctttt gttgtctaat ttagttatgg
4251 ggatcacagg aatttctgga aatttcttcg gtagattttg ggaattgtca
4301 caccgcccca gattatctgc agaatctgaa acacaagaac aaatgacacc
4351 attattttca acttgatagt acacattgta agttgatact cctttgatct
4401 cacattttag ggatgcattc aggcaattgt tagggacttc ttgtatagat
4451 acagcttttt ctgtgccagt ttcatcttga agaacaggag cctgcttctc
4501 agctcgttct attctggatt tatcagagtg tgctttgaag ttcccatcgg
4551 gaagaacctc tgggactgtt ctgcgcaaca tcaaagaagt tgtagatacc
4601 tcattctcag aagaatcatc ataaatttct gggtgatctc ctcgaattat
4651 ttccactttt gcatcagtag ccctgaacaa cagaatgctc agtaaaactg
4701 agcttagtgc tattgcaaaa agactcagtt ttatcattag ttctagtagt
4751 tttattagtc tcattctaaa cgtttgcctg gattgtgatg gttgtctgtt
4801 taattgtact atgtccgggt taagattttt gtttgcactg attgctct