Sequence of DPV Carnation mottle virus
Carnation mottle virus isolate China, complete genome.
ACC No: HQ660513
Dated: 2011-06-26 | Length: 4003 | CRC: 956149906
ID HQ660513; SV 1; linear; genomic RNA; STD; VRL; 4003 BP.
XX
AC HQ660513;
XX
DT 26-JUN-2011 (Rel. 109, Created)
DT 26-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE Carnation mottle virus isolate China, complete genome.
XX
KW .
XX
OS Carnation mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4003
RA Tong A.Z., Wang L.C., Li X.P., Kong B.H., Cai H., Chen H.R.;
RT ;
RL Submitted (26-NOV-2010) to the INSDC.
RL College of Plant Protection, Yunnan Agricultural University, Kunming,
RL Yunnan 650201, China
XX
FH Key Location/Qualifiers
FH
FT source 1. .4003
FT /organism="Carnation mottle virus"
FT /host="carnation"
FT /isolate="China"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="25-Oct-2010"
FT /db_xref="taxon:11986"
FT misc_feature 70. .2679
FT /note="similar to RNA-dependent RNA polymerase"
FT CDS 2334. .2519
FT /codon_start=1
FT /product="P7 protein"
FT /protein_id="AEI55439.1"
FT /translation="MDIEPEVPVVGKQLLAGNRGKQKTRRSVAKDAIRKPASDSTNGGN
FT WVNVADKIEVHIHFNF"
FT CDS 2425. .2679
FT /codon_start=1
FT /product="P9 protein"
FT /protein_id="AEI55438.1"
FT /translation="MPSVNLHLIVLTGVIGLMLLIRLKCTFTSTFSLPPLVTLNQIIAL
FT SFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK"
FT CDS 2669. .3715
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AEI55437.1"
FT /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE
FT MLAGYTPAILAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVIPSF
FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP
FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFD
FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK
FT WCFIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAICELVTQMEGQILKITKTSAEQP
FT LQWVVYRM"
XX
SQ Sequence 4003 BP; 1121 A; 859 C; 1095 G; 928 T; 0 other;
hq660513 Length: 4003 26-JUN-2011 Type: N Check: 4349 ..
1 gggtaagctg gcgggcaaac ctacactcta tcttaattgc attatatatt
51 ccaaccatct gctttcacta tgggattacc cagtctacta gtggaaggcg
101 ttattggatg cactctagtc ggtggtttgg tagctgtggg tagcgcagcg
151 ctggccgttc gggcaaccat cggtgttgta gaattcaata gggagtgtgt
201 gcgcggggcg agaaggatcg tagctagcgg aggaaagtgc ttaatagtcc
251 aatcccctta tggcaatccc aaccaaggat agataagagg tgaagacgaa
301 gaaattgata atgtggagga gtcaacaccg gaggaattga ctcagttgat
351 tgaggttaag gcggaagtgg atgggaaaga ggtcgttgtc tctaagaagc
401 gtgtagtaaa caggcacttg agacaacgat tcgttcgctc catagccatc
451 gaagccaaga atcactttgg tggtgacatc agccctagca aggccaacta
501 tctttccgtt tccaagtttt tgacggggaa atgcaaggag agacatgttg
551 tgcccgctca cactagagat tgtgtgagtg ctgctatggt gctggtgttt
601 acccctgacg tccacgagat caggatgatg gcaggattgg cgtctgacgc
651 agcgtacgga agaaagatcg caatggcaag catactgaac aggaaggggt
701 ggtgctggag gctgatggta aatccattag atagggcaag atggtgggaa
751 atgtggtgcg ttgtaaacgg gtttgactcc aacaaacccg tcacctttcc
801 caaatagggg ggcctgttct acctcaatgg tgtggagacg aaaattcgtc
851 gtggaggcca cccatcagtg attgaggtag acgggcaatg tcctcccaaa
901 gagagaaaac tctacgtaca gaatgccata accactggtt atgaatatag
951 ggtccacaac cattcgtacg caaacctcag acgagggctc cttgaaagag
1001 ttttctatgt tgagcgcaac aaggagctag tcagctgtcc gcaacctgaa
1051 cccggcagct ttaaagagat gggatacctg cgacgcaggt tccatagagt
1101 gtgtggtaat cattcccgga tctctgccaa tgatttggta gattgttatc
1151 agggcaggaa acgcacaatc tatgagaatg cagcagcgtc tctactcgat
1201 agagctatcg aaaggaagga tggcgatctc aaaaccttta tcaaggcgga
1251 gaaattcaac gtgaatctga aaagtgatcc tgctcctcgg gttatacaac
1301 ctaggagccc tcgctacaat gtggagttgg gccggtactt aaagaagtat
1351 gaacaccatg cttacaaagc cttagacaag atctggggag gaccaacagt
1401 catgaaagga tacactacag aggaggtagc acagcacatt tggagcgcat
1451 ggaatcaatt ccagacacct gtagccatag gatttgacat gtcacgattc
1501 gatcagcatg tgtctgtagc cgcgctcgag ttcgaacatt catgctattt
1551 ggcctgtttt gaaggggacg ctcatctcgc caatttgctt aaggtgcaac
1601 tggtgaatca tggcgtgggt tttgctagca atggaatgtt gcgatacact
1651 aaggaagggt gcggaatgag cggtgacatg aacactgcct tgggcaactg
1701 tttgttggct tgccttatca ccaaacactt aatgaaaatc aggagcagac
1751 tgatcaacaa tggggatgac tgcgtgctta tttgcgaaag aacagacacc
1801 gactacgtcg tgagtaattt aacgacggga tggagtcgat ttggattcaa
1851 ttgcatagca gaagagccag tgtacgaaat ggaaaagatc aggttctgcc
1901 agatggcacc ggtgtttgat ggagcaggtt ggctgatggt cagggaccct
1951 ttggtgagca tgagcaagga ttctcactcc ttagtgcatt ggaacaacga
2001 aaagaatgca aaacaatggc tgaaatcagt gggaatgtgc ggtctgcgga
2051 ttgccggggg ggttccagtt gtgcaagagt tctaccaaaa atacgttgaa
2101 acagccggga atgtgagaga gaacaaaaat atcacggaga agagtagttc
2151 tgggttcttt atgatggcgg atcgcgctaa gcggggctat tctgctgtgt
2201 ctgaggtgtg ccgattcagc ttctaccagg cattcggcat tacgccagac
2251 cagcaaatcg cgttggaggg ggagatcagg tctctcacta tcaacaccaa
2301 cgtggggccc cagtgtgaag cggcagattc actatggata ttgaaccgga
2351 agtaccagta gttgggaagc aattgctcgc tgggaataga ggaaaacaaa
2401 agacacgtag atcggtggcc aaggatgcca tccgtaaacc tgcatctgat
2451 agtactaacg ggggtaattg ggttaatgtt gctgataaga ttgaagtgca
2501 cattcacttc aacttttagt ttgcccccac tggtaacttt aaatcagata
2551 atagcgttgt cattttgtgg tcttctatta aacagcatct ctcgggcaga
2601 aagagcttgc tattacaact actctgttga tagttctaaa caacaacaca
2651 tttcgataag tacaccaaat ggaaaataaa ggagaaaaga tcgcgatgaa
2701 tcccactgtg caaacattgg cgcagaaggg ggacaagtta gccgtgaagt
2751 tggtgacaag gggttgggcc tctctgagta cgaaccagaa gaggagagct
2801 gaaatgcttg ctggatacac tccagcgatc ctagccttca caccccgacg
2851 accacggatg acgaaccctc ctccaagaac cagtaggaat tcaccaggac
2901 aagctggaaa gtccatgacg atgagtaaga ccgaactatt aagcaccgtc
2951 aaaggtacca caggtgttat cccaagcttt gaagactggg tcgtttcccc
3001 ccgaaacgta gccgtcttcc ctcaactctc gctgctggcg acgaacttca
3051 acaagtaccg cattactgcg ctcactgtga agtactcacc cgcgtgcagc
3101 ttcgagacca atgggagggt ggctctggga ttcaacgatg acgcttcgga
3151 cacaccacca accaccaagg ttggatttta cgatctgggc aaacatgtgg
3201 aaactgctgc acagacagct aaggatctag tgataccagt agacggcaaa
3251 acccggttca tcagggactc ggctagtgat gatgccaaac tagtcgattt
3301 tgggcggata gtcttgtcaa catacgggtt tgacaaggct gacactgtgg
3351 tgggcgaatt attcatacag tacacgattg tgctgagtga cccaaccaag
3401 acggccaaaa tttcacaggc aagcaacgat aaggtgtcgg acggaccaac
3451 gtatgtggtc ccttcggtca atggcaacga gctacaacta agagtggtag
3501 ccgctgggaa atggtgcttt atagtgcggg gtacggttga gggaggcttc
3551 accaaaccca cacttattgg gccaggaatc agcggtgacg tggactatga
3601 aagtgccaga cctatcgcca tttgtgagtt ggtgacacaa atggagggcc
3651 agatattgaa aatcaccaag acctcagcag aacagccact ccaatgggtt
3701 gtttatagga tgtgaatgcg atagaaaagt ttgttagaca cacacggcgg
3751 gacgtgttgc cggagctgcc actccgtcca agatgggtcg atattaacca
3801 tctttggcaa cagcgtgcgt gactaatcga acctagtaat tgcatagcat
3851 ccgactgtaa cctgttttct gctgaagacg agggtggtct cgtgatccca
3901 aaccataaaa gaaaccaact tgttggtgga agggcttgga agtaggatca
3951 accactgttt attaattagg ggtgagagta ttcactgtac tctttccccg
4001 ccc