Sequence of DPV Armero virus
Armero virus strain Co Ar 170396 segment L, complete sequence.
ACC No: HQ661805
Dated: 2011-05-27 | Length: 6393 | CRC: -913336463
ID HQ661805; SV 1; linear; genomic RNA; STD; VRL; 6393 BP.
XX
AC HQ661805;
XX
DT 20-APR-2011 (Rel. 108, Created)
DT 27-MAY-2011 (Rel. 109, Last updated, Version 2)
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DE Armero virus strain Co Ar 170396 segment L, complete sequence.
XX
KW .
XX
OS Armero virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC unclassified Phlebovirus.
XX
RN [1]
RP 1-6393
RX PUBMED; 21325481.
RA Palacios G., Travassos da Rosa A., Savji N., Sze W., Wick I., Guzman H.,
RA Hutchison S., Tesh R., Lipkin W.I.;
RT "Aguacate virus, a new antigenic complex of the genus Phlebovirus (family
RT Bunyaviridae)";
RL J. Gen. Virol. 92(PT 6):1445-1453(2011).
XX
RN [2]
RP 1-6393
RA Palacios G., Travassos da Rosa A., Savji N., Sze W., Wick I., Guzman H.,
RA Hutchison S., Tesh R., Lipkin W.I.;
RT ;
RL Submitted (29-NOV-2010) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 722 West 168th
RL Street, 17th Floor, New York, NY 10032, USA
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CC GenBank Accession Numbers HQ661805-HQ661807 represent the complete
CC genome of Armero virus strain Co Ar 170396.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6393
FT /organism="Armero virus"
FT /segment="L"
FT /host="Lutzomyia sp."
FT /strain="Co Ar 170396"
FT /mol_type="genomic RNA"
FT /country="Colombia"
FT /collection_date="1986"
FT /note="serogroup: Aguacate"
FT /db_xref="taxon:1006584"
FT gene 20. .6277
FT /gene="L"
FT CDS 20. .6277
FT /codon_start=1
FT /gene="L"
FT /product="polymerase"
FT /protein_id="AEB70984.1"
FT /translation="MNEILQNQPLSQDQYFCRAVAHYDDEIFGLAILDFTIREDCGLVI
FT VDLDLDGRGEWSTIGSTVKDHLKLNPQSLPNFVHDFTFGHLANSTDSPFVSFFPAVGDG
FT FDHLTPDVMIKMPSGRTHIIEFTTFRGTSQGAQQAALLKIGKYESACERRSRVSPVTFS
FT VISVHRYGVWTNLDLSEEQVNELVYRFRLAVSIFEEMKVMFPELSLVDEELSKTEREVL
FT GIVSTIKMDWEKTEKTFPHFKREMFENFRQSDPDLDYISSIISKCIGESEESILKENYF
FT ELQNLQLRLRENGRQCEKALRAFSSEMASGDLRDVNDPKSTVQIPPWVTIEGPEGKDLV
FT PLKSLEVNGDHPMQRIWSKVCNSASLELIDRMVDDPESELQHAISGTRDRADERSRYHR
FT VIVELDSAELEYAATLGVGGKKYRDHHSSREARARSKRGFSLDHNIKSLERFISGCTQE
FT LLEEGDYYKPLLEDMPLRIEAQRIHQPTHTRNNGENEFLRNHRLFMETPLGSWSQMVSL
FT IGAELSASVKQHVKQKSFIVKRLLGSGIYLLIKPTNSKSHIFVSYALDKLYWSHDLSSG
FT TEFKRYLDSGDLFITEFTSYKLSKLTNLCKCCSLLESSLSFWTEAYHEKPWLSVDVIRD
FT GRQPEILTMTKLSLLTLLEDKARTEELQTLLRYVVMEGFVSQPELPRPQKMISKLPRVL
FT RTELQVLLIQRVMTSISRIAANPFKLKKSDGSISWSGLFNPLSGSKLLDLQPLISCCYN
FT GYFKNKEEETEPSALSAMYKKIIELEHLKPETDEFLGWGDPKDPKTHEFSRSYLKEVCE
FT HGKAILRRMYGHNVLQQIDDQITREISSLTIERLATLKATSNFDENWYIYKDCKDKNYT
FT RDKLLVKMSQFASEGKTLAIEKFEDCMTSIESRGAMHICLFKKQQHGGLREIYVMGAEE
FT RIVQSVVECIAKTVGKFFSSDTLCNPNNKSRIPESHAHRARKHCRSSVWTCATSDDAKK
FT WNQGHFVTKFAMMLCEFTSPKWWPIIIRGCSMFTRKFMMMNMRYLDILNGHRELKVDDE
FT FVMTLFNAYHGEVEVPWLEKGRTYLQTTTGMMQGILHSTSSLLHTLHQEFIRSLSFKVF
FT NMKVQPDMGSRVVCDVMQGSDDSSMIISFPANEDSTFIKCKMAAAMCFRVKKTLGLYLG
FT IYPSEKSTSNTDFVMEYNSEFFFHTSHVRPLVRWVSSCCSLPEVETLVARQEEASNLLT
FT SISEGGGSFALSAMIQQSQCTIHYQLIGMGVSSIFPHYRRALARWKDPGLGFFLLDNPY
FT AAGLGGFRFNLFKAITMTELQKVYAYFMRKVKDNTLPEEEGVLVPETCSVSPGGAIIMS
FT SSLKWGSRKKFSRLRDRLNIPENWVELINDNPEVLYRAPRSGEEIILRIAEKVHSPGVV
FT SSLSTGNAVCKVMASSVYFLSAAIFEDSGKPEFSYLDNSKYSILQKMIAYDGFNGSHDI
FT DPEDILFLFPNVEELEQLDMIIYDKGPIDLVERVSSREATQSKVIVFDERRCMRVSPEK
FT LVSDKWFGTQKSKIGRTAFEIEWAKLTRVIRWLKDTPEGTMEKSPLSNQIQIRNFFARL
FT EGRSRCVRITGAPVKKRSGMSKLALVIRDNFCKTGHLRGIEDISGSSRSVSVEVLRHVL
FT FSVLQGPYSDESKLDLSIKSLSSSSEIELRENDGKTKANILSILQSYIWADRGVIQKIE
FT KAGAGTVGGFIKPQKTYKDGQIIKYYGHGIWRGMMDGIDMQIDIDNKKNQNPQITSIRV
FT AGTKSPWVVCQSLKLWCEDMGVKNSADFSESVRRAPKFWLSNFKMFGGNHPLGAPVYIL
FT DGRMDDLREIRDEDILIKVRRGTLNLFVKSRGGSEMHILSYTSSDTDLSPSMVKEAEMS
FT MPELMNLFSREPSRSWVSCSPLPVQYTEVLLDVCEGLKRVDRINPIRLSEIIRICTDSS
FT LRTKVGTVYSMQQFSEEAQIIDCDDLLDIMIEDIRTGAFSEVVRKMEDEVKGDNEDLDF
FT DYDDINLFGPAHHKEYGELSLVSHPLMDKFVDNAISVMGRSSLRRLLELGVTKTRYLKI
FT SRLVYRAIGRNADAIRTDDFSLEDQPSISEDMLG"
XX
SQ Sequence 6393 BP; 2048 A; 1132 C; 1533 G; 1680 T; 0 other;
hq661805 Length: 6393 27-MAY-2011 Type: N Check: 9652 ..
1 acacaaagaa gcccatatca tgaatgaaat attacagaat caacctttaa
51 gtcaagacca gtacttctgt agagcagtag cccactatga cgatgagatc
101 tttgggctag caattcttga tttcaccata agggaggact gtggattggt
151 catagtagac ttggatctgg acggaagagg tgagtggagt acaattggat
201 caactgtaaa agaccattta aagttaaatc ctcagagtct tcccaatttt
251 gttcatgact tcacatttgg tcacttggca aacagtacag atagtccttt
301 tgttagcttc ttcccagcag taggagatgg atttgatcac ttgacaccgg
351 atgtgatgat caaaatgcct tcaggacgta ctcacataat agaatttacg
401 acctttagag ggacatctca aggggctcaa caagctgctc ttctgaagat
451 tggaaagtac gagtcagcat gtgagagaag gagtagagtc agtcctgtca
501 ctttctcagt gatttctgtt cacagatatg gagtgtggac aaaccttgac
551 ctaagtgagg agcaggtaaa tgagcttgtg tataggttca gattggcagt
601 gagtatattt gaagagatga aagtgatgtt tcctgagttg tccctggttg
651 atgaagaact gagtaagaca gaaagagaag ttttaggtat tgtatcaacc
701 atcaagatgg attgggagaa gactgagaag actttccctc actttaagag
751 ggaaatgttt gagaatttca gacagtcaga tccagacctt gattatatat
801 catcaataat atctaagtgt attggtgaat cagaggagtc aatcttgaag
851 gaaaactact ttgagctaca gaatctgcaa cttagactaa gagaaaatgg
901 gcgacaatgt gagaaggcac tgagagcctt ctcaagcgag atggcatctg
951 gggatctgcg agatgttaat gaccctaaat ccacagtcca gattcctccc
1001 tgggtcacaa ttgaaggccc tgaagggaaa gatctagtgc cattaaagtc
1051 tctagaagtc aacggggatc atccaatgca gaggatctgg tcaaaagttt
1101 gcaattcagc atctctagaa ctgatagata gaatggtcga tgatcctgag
1151 tctgagttac aacatgctat ttctgggact agagatcggg cggatgaaag
1201 gagcaggtat catagagtga ttgttgagtt ggatagtgca gaactggagt
1251 atgctgcaac actcggagtt ggaggtaaga aatacaggga ccatcattca
1301 tcaagagaag caagggctcg cagcaagagg ggcttttctt tagatcacaa
1351 tataaagtcc ttagagagat ttatatcagg ttgtactcaa gagctgttag
1401 aagagggtga ctactacaaa cccttattag aggacatgcc cttaaggatt
1451 gaagcacaga gaatccatca gcccactcat acaaggaata atggtgagaa
1501 tgaattcctt aggaaccata gactgtttat ggagacccct cttggctcat
1551 ggtcacaaat ggtcagtctc atcggagctg agttgtctgc gtcagtcaag
1601 caacatgtaa aacagaagag cttcattgtg aaaaggctac tgggatcagg
1651 aatataccta ctgataaagc caaccaattc caagagtcac atctttgtgt
1701 catatgcgct tgataaacta tactggtctc atgacttatc aagtggaact
1751 gaatttaaga ggtatctaga tagcggagac ctatttatca ctgaattcac
1801 gtcctacaag ctaagcaaat tgaccaactt atgtaagtgc tgctcactgt
1851 tggagagttc tctcagcttt tggacagagg cataccatga gaagccatgg
1901 ctgagtgttg atgtgattag ggatgggcgt cagccagaga tcttaacaat
1951 gacaaagctt tctctattga ccttgctaga agataaagca agaactgaag
2001 aattgcaaac gctacttaga tatgttgtca tggagggatt tgtgtcccaa
2051 cctgagctac ctagaccaca gaagatgatc tctaaattac ctagagttct
2101 gagaactgag ttgcaagtct tactcattca gagggtgatg acctccataa
2151 gtaggattgc agcaaatcca ttcaagctca agaagtctga tggttccatt
2201 agctggtctg gattattcaa cccattgtct ggatctaagc tacttgactt
2251 acaaccactg ataagctgct gctacaacgg gtactttaag aacaaggaag
2301 aggaaactga gccttctgcc ttatcagcta tgtacaaaaa gataattgaa
2351 ctagagcatc tgaaaccaga aacagatgaa ttcttaggtt ggggagaccc
2401 caaagacccc aagactcatg agttcagtag atcctatctc aaagaagtgt
2451 gtgagcatgg gaaagcaatc ttgagaagaa tgtatggaca caatgttttg
2501 cagcagattg acgatcagat cacaagagag atttcctcac ttaccattga
2551 aagactagca actttgaaag caactagcaa ctttgatgag aactggtaca
2601 tatataaaga ctgcaaggac aagaattaca caagagacaa gctgctagtc
2651 aaaatgtctc agtttgcatc tgaagggaag acattggcaa tagaaaagtt
2701 cgaggattgc atgacctcta tagaatcaag gggagccatg cacatttgct
2751 tgtttaagaa gcagcaacat ggaggactta gggagattta tgttatggga
2801 gcagaagaaa gaattgttca gtctgtagtg gaatgtatag ctaaaacggt
2851 tggcaagttc ttttcttcgg atacactgtg taatccaaac aacaagtcta
2901 ggatccctga gagtcatgca catagggcta gaaaacactg caggtcttca
2951 gtttggacat gtgccacttc tgatgatgct aagaagtgga atcaaggtca
3001 cttcgtgaca aaatttgcca tgatgctatg tgagttcaca tcaccaaaat
3051 ggtggcccat aatcattaga ggatgctcaa tgttcacccg gaaatttatg
3101 atgatgaata tgaggtattt ggacattcta aatgggcata gagagctcaa
3151 agtggatgat gaattcgtga tgaccttgtt caatgcttat cacggagagg
3201 tagaggtacc atggcttgag aagggtagga catatttaca aacaaccaca
3251 gggatgatgc aagggatcct tcacagcacc tcatctttgc tccacacctt
3301 acatcaagaa ttcatccgtt cattatcatt caaagttttt aacatgaaag
3351 tgcagccgga tatgggttct agagtggttt gcgatgtcat gcagggctct
3401 gatgatagct caatgattat aagctttcct gcaaatgaag actccacctt
3451 tataaagtgt aaaatggcag cagccatgtg tttcagagta aagaaaacat
3501 tagggctgta cttagggata tacccatccg agaagtccac atccaacaca
3551 gactttgtca tggaatacaa ttctgaattc ttcttccata ccagccatgt
3601 gagaccatta gtgagatggg tttcatcctg ttgcagtctg ccagaagtgg
3651 aaactcttgt cgccagacaa gaagaagcat ccaatttact aacctcaatt
3701 tcagaagggg gagggtcttt tgcgttgtct gctatgatac aacaatcaca
3751 atgcacaatc cactaccagt tgataggaat gggtgtgtct tccattttcc
3801 ctcactacag aagagctcta gccagatgga aagatcctgg gctgggtttc
3851 ttcctattag acaatccata tgctgcagga ttagggggtt tcaggttcaa
3901 cttgtttaag gctatcacaa tgacagaatt acagaaagtt tatgcttact
3951 ttatgagaaa agtcaaggac aatactttac ctgaggaaga gggagtgtta
4001 gtcccggaga cctgcagtgt cagtcctgga ggagcaataa taatgagttc
4051 ctcattaaag tggggatcca ggaagaaatt ttctagactc agagataggt
4101 tgaacatacc tgagaactgg gttgagttaa ttaatgacaa tccagaggtc
4151 ctatatagag ctcccagatc aggagaagag ataatattaa gaatagctga
4201 aaaagtacac agtcctgggg ttgtctcttc attgtcaact gggaatgcag
4251 tttgtaaggt catggcaagt tcagtgtact tcttatctgc ggcaattttt
4301 gaggatagcg gcaaaccaga attctcttac ctcgacaatt caaaatatag
4351 tatattgcaa aaaatgatag cgtatgacgg cttcaatggc tcacatgata
4401 tagatcccga agacatactc tttctcttcc caaatgtaga ggagctagag
4451 cagttagaca tgataattta tgataaggga cctattgatt tagtggaaag
4501 agttagctct agggaagcaa ctcagtcaaa agtcatagtc tttgatgaga
4551 ggaggtgcat gagagtgagt ccagaaaagc tggtttctga caaatggttt
4601 ggaacccaaa agagtaaaat aggcaggact gcatttgaaa ttgaatgggc
4651 gaagttgacc cgagtaatca ggtggctcaa agacactcct gaggggacaa
4701 tggaaaagtc tccattgtca aatcagatcc aaataagaaa cttctttgct
4751 agactagaag gcagatctag atgtgtgagg ataacaggag caccagtgaa
4801 aaagagatca ggcatgagta agctagctct ggtcatacgt gacaacttct
4851 gcaaaactgg tcacttaaga ggaatagaag acataagtgg gagctctaga
4901 tctgtttctg tggaagtctt aaggcatgtc ctattttcag tcctgcaagg
4951 tccttatagt gatgaatcaa aactagactt gagtataaag tctttgtctt
5001 catccagcga gattgagcta agagaaaatg atgggaaaac caaggccaac
5051 attttgagta tactacagag ctacatatgg gcagatagag gagtaattca
5101 gaagattgag aaagcaggag cagggacagt tgggggtttc atcaagcctc
5151 aaaaaacata taaagacggt caaattatca agtattatgg tcatggaata
5201 tggcgtggta tgatggacgg aatagatatg cagattgaca tagataataa
5251 gaagaatcag aacccacaga ttacaagcat aagagttgct ggcacaaaaa
5301 gcccatgggt tgtatgtcaa agtctgaagc tatggtgtga agatatggga
5351 gttaagaatt cagctgactt ctctgagtca gtcaggcgag cccctaaatt
5401 ctggctatct aacttcaaaa tgttcggtgg gaatcatcct ttaggagccc
5451 ctgtttacat tttggatggt agaatggatg atctgcggga gatcagagat
5501 gaggacattc ttattaaagt caggagagga acattaaact tatttgtgaa
5551 aagcagagga ggtagtgaga tgcacatact atcatatact tcctctgata
5601 ctgatttgag cccgtcaatg gtcaaagagg ctgaaatgtc tatgccagag
5651 ctaatgaact tatttagcag agaaccaagc aggtcttggg taagttgctc
5701 tcctctgccg gttcaataca cagaagtatt attagatgtg tgtgaaggat
5751 tgaagagagt ggacagaata aaccccatca ggctaagtga gataattaga
5801 atctgcacag actcttcctt aagaacaaag gttggcacag tgtactcaat
5851 gcaacagttc tcagaggaag cacaaataat tgattgtgat gacctcttag
5901 atattatgat agaggatatt aggactggag ccttcagtga ggttgttagg
5951 aagatggaag atgaggtgaa aggagacaat gaggatttag attttgacta
6001 cgatgatatc aatctgttcg gccctgcaca ccacaaggag tatggggagc
6051 tatctttagt gtcacatcct ttgatggaca agtttgttga caatgctata
6101 tctgtaatgg gcaggtcatc actcaggagg ctactagagc taggggtgac
6151 aaagacaaga tatctgaaga tctcaagatt agtttacaga gccataggga
6201 gaaatgcaga tgcaataaga acagatgatt ttagtttaga agaccagcct
6251 agcataagtg aagacatgct gggctgaaag ccctcagagc tcataccaga
6301 gacaagtgga ttagccaaga tgtcactcac tgtttgaaga ctagattttg
6351 gtgtaaaatt ataaattcat taagtaatgg gcggtctttg tgt