Sequence of DPV Armero virus

Armero virus strain Co Ar 170396 segment S, complete sequence.

ACC No: HQ661807

Dated: 2011-05-27 | Length: 1835 | CRC: 288682983

                
ID   HQ661807; SV 1; linear; genomic RNA; STD; VRL; 1835 BP.
XX
AC   HQ661807;
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DT   20-APR-2011 (Rel. 108, Created)
DT   27-MAY-2011 (Rel. 109, Last updated, Version 2)
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DE   Armero virus strain Co Ar 170396 segment S, complete sequence.
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KW   .
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OS   Armero virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC   unclassified Phlebovirus.
XX
RN   [1]
RP   1-1835
RX   PUBMED; 21325481.
RA   Palacios G., Travassos da Rosa A., Savji N., Sze W., Wick I., Guzman H.,
RA   Hutchison S., Tesh R., Lipkin W.I.;
RT   "Aguacate virus, a new antigenic complex of the genus Phlebovirus (family
RT   Bunyaviridae)";
RL   J. Gen. Virol. 92(PT 6):1445-1453(2011).
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RN   [2]
RP   1-1835
RA   Palacios G., Travassos da Rosa A., Savji N., Sze W., Wick I., Guzman H.,
RA   Hutchison S., Tesh R., Lipkin W.I.;
RT   ;
RL   Submitted (29-NOV-2010) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 722 West 168th
RL   Street, 17th Floor, New York, NY 10032, USA
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CC   GenBank Accession Numbers HQ661805-HQ661807 represent the complete
CC   genome of Armero virus strain Co Ar 170396.
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1835
FT                   /organism="Armero virus"
FT                   /segment="S"
FT                   /host="Lutzomyia sp."
FT                   /strain="Co Ar 170396"
FT                   /mol_type="genomic RNA"
FT                   /country="Colombia"
FT                   /collection_date="1986"
FT                   /note="serogroup: Aguacate"
FT                   /db_xref="taxon:1006584"
FT   gene            36. .866
FT                   /gene="NS"
FT   CDS             36. .866
FT                   /codon_start=1
FT                   /gene="NS"
FT                   /product="nonstructural protein"
FT                   /protein_id="AEB70987.1"
FT                   /translation="MTSYLFDTPVIVRPNGYFDREVYVTYMAHNKYCEHPVSVHNCMEI
FT                   PVKNFGVSLLHKESLSDFYILGLLPFRWGDRMGNSRVTRDSFPFMKDLLKDISDMHDSE
FT                   FFRSFLPNVKKALSWPLGYPTLEFIRMTKSDLNLPHFKEISANATLIMQMGQPALDLDQ
FT                   GFVNAHKRIVMESITRGFGHKDFPGKNMIFEVASLQCVRLLNAVPADLLYCQVPNSLTA
FT                   IVMKHRSILEDHPQQPLGNQKWTPDPDSWLLDDQAATLHEEFALILSESEDDED"
FT   gene            complement(1046. .1783)
FT                   /gene="NP"
FT   CDS             complement(1046. .1783)
FT                   /codon_start=1
FT                   /gene="NP"
FT                   /product="nucleocapsid"
FT                   /protein_id="AEB70986.1"
FT                   /translation="MADFERLAIEFSEAGVNIADVVNWVNEFAYQGFDAKRVLELLQQR
FT                   GGSSWQEDARKMIVLALTRGNKIEKMILKMSEEGKKTVLALKKKYQLKSGNPGRDDLTL
FT                   SRVAAALAGWTCQALPHVENFLPVTGEAMDALSPGFPRCLMHPSFAGLVDTTLPPETQD
FT                   AILAAHSLFLVQFSKVINPSLRGKPKGEIVASFKQPMLAAVNGGFIGPDKRRKMLQSLG
FT                   VVDVNGVPSEAIKVAANKFRSSQ"
XX
SQ   Sequence 1835 BP; 503 A; 498 C; 355 G; 479 T; 0 other;

hq661807 Length: 1835  27-MAY-2011  Type: N  Check: 5420  ..

       1  acacaaagac cccccgtgat ttctcaaata acaagatgac tagctaccta
      51  ttcgacacac ctgttatagt gaggcccaat ggctactttg atagggaagt
     101  ctatgtaaca tatatggctc acaacaagta ctgtgaacac cctgtatcag
     151  tacataactg catggagatt cctgttaaga attttggagt ctccctactg
     201  cacaaggaat ctttgtctga cttctacatt cttggcctcc taccattcag
     251  atggggggac agaatgggaa actctagggt cactcgggac agctttccgt
     301  tcatgaaaga cttgctcaag gacatcagtg acatgcatga ctcagagttc
     351  ttcagatcct tccttcctaa cgtgaagaag gcgttgtcat ggccacttgg
     401  atatccaacc cttgagttta ttagaatgac aaaatcagat cttaacctcc
     451  cacacttcaa agagatctct gctaatgcca cactgattat gcagatgggg
     501  cagccagcac tcgatcttga tcaagggttt gttaatgctc ataagagaat
     551  agtgatggag tccataacta gaggatttgg tcacaaagac tttccaggga
     601  aaaacatgat attcgaggta gcctcattgc agtgtgttag acttcttaat
     651  gcagtccctg cagatctctt gtactgtcaa gtgccaaact ccctcaccgc
     701  cattgtgatg aagcacagat ctatcttgga agatcacccc cagcagcctc
     751  taggcaatca aaagtggact ccagaccctg actcctggct tttagatgac
     801  caggctgcca ccttacatga ggagttcgct ttaatattat ctgaatctga
     851  ggatgacgag gattgatgcg ctgccaaatc cccctgatcc taatcccccc
     901  tccccccaat catatgtata tacattgatt caaatcacag ccccatgtac
     951  acagcccaac accccattag accccaccac ccaatacccc gaagcccacc
    1001  ccatgccctc acccacaaac ccccatccct ccccacctgg gcagcctatt
    1051  gagagcttct gaatttgttg gcagccactt taatggcctc tgagggcaca
    1101  ccattcacat caacaactcc aagagactga agcattttcc tcctcttgtc
    1151  tggtccgata aacccaccat tgactgctgc caacattggc tgcttaaatg
    1201  aagccacaat ctctcctttt ggcttacctc tcagactagg gtttattacc
    1251  ttcgaaaatt gcaccagaaa taggctatga gcagcaagta tggcatcctg
    1301  agtctcaggt ggaagagttg tgtccacaag cccggcaaag ctaggatgca
    1351  ttaagcatct tgggaatcca ggagataagg catccattgc ttcaccggtc
    1401  actggcagaa agttctccac atgaggcaat gcctggcaag tccagccagc
    1451  taaagcagcg gcaacacgag acagggtgag atcgtccctc ccaggatttc
    1501  cagacttcag ctgatacttc ttcttcagag caaggacagt cttttttcct
    1551  tcttctgaca tcttgagaat catcttctct attttgtttc ctctggttaa
    1601  ggccaataca atcatcttcc tagcatcttc ttgccaggat gagccacccc
    1651  tctgttgcag tagctcaagc accctcttgg cgtcaaatcc ctgataggca
    1701  aattcattaa cccaattcac aacatctgct atattaacac cagcctcact
    1751  aaactcaata gctagtcgct caaagtcagc cattgcagga attaattcac
    1801  ttgataatta agaagtaatt cggggttctt tgtgt