Sequence of DPV Pepino mosaic virus
Pepino mosaic virus isolate SAR01, complete genome.
ACC No: HQ663893
Dated: 2011-06-22 | Length: 6419 | CRC: 541051343
ID HQ663893; SV 1; linear; genomic RNA; STD; VRL; 6419 BP.
XX
AC HQ663893;
XX
DT 22-JUN-2011 (Rel. 109, Created)
DT 22-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE Pepino mosaic virus isolate SAR01, complete genome.
XX
KW .
XX
OS Pepino mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC Alphaflexiviridae; Potexvirus.
XX
RN [1]
RP 1-6419
RA Tiberini A., Tomassoli L., Ciuffo M.;
RT ;
RL Submitted (01-DEC-2010) to the INSDC.
RL Virology, CRA PAV Plant Pathology Research Centre, Via C.G. Bertero 22,
RL Rome, Italy 00156, Italy
XX
FH Key Location/Qualifiers
FH
FT source 1. .6419
FT /organism="Pepino mosaic virus"
FT /host="tomato"
FT /strain="Ch2"
FT /isolate="SAR01"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /collection_date="2001"
FT /proviral
FT /db_xref="taxon:112229"
FT 5'UTR 1. .85
FT CDS 86. .4402
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AEI30853.1"
FT /translation="MSRVRNTLEKIRDPQVQSSICEAAYQHVRPVLKESLINCPYALND
FT YEADTLENLGVTINPHAIQTHTHAAAKVVENRMLEIVGHHLPKDEKVTFIFLKRSKLRY
FT MRRAAVHKDVFVNHNIEPKDFFWYNMESTSTSFSVNTRIAYISDSLHFMEPADVTHLFD
FT RCHNLKTLMATVVLPVEAIHKQTSLFPAIYSINYNEEGFEYIPGSHGGGAYFHRYETLR
FT LAKYSRFIGQDPLTGLRYTITIQMVESLGANHLFLFQRGNFETPLYRTFQKNSFVTFPN
FT IFHPQHVNATKPMPRSRAIQLYLYVKSVNKVTQRDIFAKVRQLISTAELELYDPDELTH
FT IVNYFAYVSKLSSINDYDNMLKSSFFKKLVAPMQHDWRCMIEFFRGKSDFNQLLTALQW
FT KDFSYTIKTEELVISTHTEIGQAICKAATTYKERRQLANLVKQGAVTLADFKEADQHVE
FT YTHFDPEFKSTVDPHRSYENAINNLGIEINEDVPESSGTNETLLNNEISLAMSSAEHVQ
FT AVQEIESLLSNPEAAPILPPAQVKTWASLASDTSSTKNREIEDIVAKLELQRNEASCSY
FT LQPNKELSKTKAADNNLPWNAWIPLLNAHGFKGNQLQYGPDGNLIQPIQDINNSQPRSD
FT YPSSLPCELVETLKKIKRAVYAIPISHRRASAYSSDIKNNRTGKLLCNQSKEWKESFAF
FT KMQHEDIVKSGVVIHGCGGSGKSQALQNFLRTLGDSNDCCTVVVPTVELRNDWVNKLHK
FT LPMEHIKTFEKAMIQPGFPIVIFDDYTKLPPGYIEAYLFHHANTELFILTGDSTQSVYH
FT ESNNGAYIASLDEAVAYYANYCGFYLNATHRNVRSLANKLGVYSEKEGHLKITFASHAL
FT QKCKVPILVPSQMKKSAMLDIGHKSMTYAGCQGLTAPKVQILLDNHTQHCSDRVLYTCL
FT SRAVDSIHFINTGPNNSEFWDKLEATPYLKAFIDVYRDEKTEMLNSKPADDSPTEPEAP
FT VTHFPIANGNNLEKLASALPEKFAREIYDKHHGYSNTIQTENPVVQLFQHQQAKDETLF
FT WATIEARLSITTPEANLREFFLKKDVGDILFFNYHNAMCLPADPVDFEEKTWEICAAEV
FT KNTYLAKPMANLINAASRQSPDFDSNKISLFLKSQWVKKVEKLGAIKSKPGQTIAAFMQ
FT QTVMLYGTMARYLMKMRQRFQPKHIFINCETTTDDLNKFVKDGWNFNRTAQTNDFTAFD
FT QSQDGAMLQFEVMKAKFFNIPADVIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTE
FT CSIAYTATRFHIDNTVKQVYAGDDMALDGVVSEKKSFRKLQNLLKLTSKTLYPKQVKGD
FT YAEFCGWTFTPGGIIKNPLKMHASIMLQEAIGNLHTAARSYAIDMKHSYQMGDQLHDYL
FT TLDEAEQHFLAVRKLHKLHQGEAMRLGEKSPPRSTH"
FT CDS 4428. .5132
FT /codon_start=1
FT /product="triple gene block protein 1"
FT /protein_id="AEI30854.1"
FT /translation="MERSTLINLLLLHKFEHKINTEGIIVVHGIAGTGKTTLLRTLFSA
FT YPSLVIGSPRPCYLDKANKISQVCLSCFPNTLCDIVDEYHLLESFPEPKLAIFGDPCPR
FT TYIERLRIPNYTSFRTHRFGKSTAALLNKLFDLNIESVKAQDDTVEYFDPFAVDPSEHI
FT SASEKEVLEFVGDQVETTSSEELAGLEFREVTFYCTTLAGAVQENPAKTFISLTRHTSK
FT LTIGELNARSDS"
FT CDS 5113. .5484
FT /codon_start=1
FT /product="triple gene block protein 2"
FT /protein_id="AEI30855.1"
FT /translation="MPGLTPRADLTDTYKIIAIAFLLSACIYFQNSHYQPVAGDNLHRL
FT PFGGQYQDGTKKISYFPQQQSYFHSGNKLNVLILIFILTLGIVLTNKFSFSISRNTHQH
FT HCYNTHSATQTGQSVPGHH"
FT CDS 5336. .5584
FT /codon_start=1
FT /product="triple gene block protein 3"
FT /protein_id="AEI30856.1"
FT /translation="MSSYLSSFLHWVLSSPINLVLALAVILTSIIATTHILQPKQVNQC
FT QVIIDGAAIVITNCPNTPEVLKAINFSPWNGLSFPQL"
FT CDS 5630. .6343
FT /codon_start=1
FT /product="coat protein"
FT /protein_id="AEI30857.1"
FT /translation="MENQPTASNPSDAPPTATQAGAQSPADFSNPNTAPSLSDLKKIKY
FT VSTVTSVATPAEIEALGKIFIAMGLAANETGPAMWDLARAYADVQSSKSAQLIGATPSN
FT PALSRRALAAQFDRINITPRQFCMYFAKIVWNILLDSNVPPANWAKLGYQEDTKFAAFD
FT FFDGVTNPASLQPADGLIRQPNEKELAAHSVAKYGALARQKISTGNYITTLGEVTRGHM
FT GGANTMYAIDAPPEL"
XX
SQ Sequence 6419 BP; 2064 A; 1461 C; 1146 G; 1748 T; 0 other;
hq663893 Length: 6419 22-JUN-2011 Type: N Check: 4311 ..
1 gaaaacaaaa cataacacat aatatcaaaa gtgaccaaac acaacataac
51 cacgtggaaa aacagcgaaa gcactttacc acattatgtc tcgtgttaga
101 aacactttag aaaagattag agacccacaa gtacaatcta gcatttgtga
151 agctgcttac caacatgtta gacctgtgct caaggaatcc ctaatcaact
201 gtccttatgc gctcaatgat tatgaagcag acacccttga gaatttaggt
251 gtcacaataa atccccatgc aatccaaaca catactcatg cggcagctaa
301 agttgtggaa aatagaatgc tcgaaattgt tggacaccac ttgcccaagg
351 acgagaaagt tactttcatt ttcctcaaaa gaagcaaact gagatacatg
401 cgaagagctg ctgtacataa agatgttttt gttaatcaca atatagaacc
451 caaggatttc ttctggtaca acatggaatc tacatctaca agcttctccg
501 tgaacactag gatcgcttac atctccgatt ctctacattt catggaacca
551 gctgatgtga cccacctctt tgaccgttgc cacaatctta aaacactgat
601 ggcgactgtt gttttacctg ttgaagccat ccacaaacaa acatctttat
651 ttccagcgat atactccatt aactacaatg aagaaggttt tgagtatatc
701 cctggttctc atggtggagg ggcatacttt cataggtatg aaacattaag
751 actggctaaa tactctagat tcattggcca ggacccctta actggactcc
801 gatacaccat aaccattcaa atggtggaga gtttaggagc caaccatctt
851 ttcctcttcc aaagaggaaa ctttgaaacg cctttataca ggacgtttca
901 aaaaaatagc tttgtgacct ttcctaacat ctttcatccc caacatgtta
951 atgccacaaa gcccatgcca agatccaggg caattcagct gtatttatat
1001 gtcaaatctg tcaataaggt gacacaaaga gatatctttg cgaaagtaag
1051 gcaacttata tctacagctg aacttgaatt gtatgaccct gatgaactta
1101 cacatattgt caattatttc gcatatgtct caaaactaag ctcaatcaac
1151 gactatgaca atatgctcaa atcaagtttt ttcaaaaaac ttgttgcacc
1201 catgcaacat gactggaggt gcatgattga attctttcgg ggaaaaagtg
1251 acttcaatca acttttaact gctcttcaat ggaaagactt ctcttacacc
1301 attaaaactg aagagttagt tatttctaca cacactgaaa ttggccaggc
1351 aatctgtaaa gctgcgacca catacaaaga aagaagacaa ttggccaatt
1401 tagtcaaaca aggagcagta acattagctg atttcaaaga agcggaccag
1451 catgtggagt acactcactt tgatcctgag tttaaatcca ctgttgaccc
1501 tcaccggagc tatgaaaatg ccatcaacaa tcttggcatt gagattaatg
1551 aggatgtacc tgaaagttcc ggcactaacg aaacattgct taacaatgaa
1601 atatctttag caatgtcatc tgctgaacat gtgcaagccg ttcaagaaat
1651 tgagtcttta ctctctaacc ccgaagcggc accaatattg ccccctgcac
1701 aggttaaaac atgggctagc cttgcatctg acacttccag cactaaaaac
1751 cgtgaaattg aagatatagt ggctaagctg gaactacaaa gaaatgaagc
1801 tagttgcagc taccttcaac caaataagga attgtcaaaa accaaggctg
1851 ctgataacaa tctcccctgg aatgcttgga tcccattgct taatgcacac
1901 ggcttcaaag gaaatcaatt acaatacggc ccagatggca acttgataca
1951 gcccatccaa gacattaaca attcacagcc tagatctgac tatccgtctt
2001 ctcttccatg tgaacttgtg gaaactttga agaaaattaa gcgtgctgtc
2051 tatgccatcc caataagcca caggagggct agtgcttaca gttctgacat
2101 caaaaataac agaactggca aacttctctg caaccaaagt aaagaatgga
2151 aagaaagctt tgctttcaaa atgcaacatg aagacattgt aaaatcaggt
2201 gttgtcatac atggttgtgg aggttctggc aaatcccagg cattacaaaa
2251 cttcttgaga acattgggtg attcaaatga ttgctgtact gttgtagtac
2301 ccactgttga acttagaaat gactgggtaa ataaactcca taaattgccc
2351 atggagcaca tcaaaacatt tgagaaagca atgattcaac ctggctttcc
2401 aattgttata tttgatgatt acactaagtt gccgcctggc tacattgaag
2451 cctacctatt tcaccatgcc aacactgagc ttttcatact tactggtgat
2501 tctacgcaaa gcgtgtatca tgagtccaac aatggagcgt acattgcctc
2551 attagatgaa gctgttgcat actacgctaa ttactgcggt ttttacttaa
2601 atgctactca tagaaatgtc cgtagtttag ccaataaact tggtgtttac
2651 agtgagaaag aaggacactt gaaaatcact ttcgcttcac atgccttaca
2701 aaagtgcaaa gtgccaattc tagttccttc tcaaatgaaa aagagtgcta
2751 tgttagacat tggacataaa tccatgacct atgctggttg ccaaggttta
2801 acagcaccca aagtacaaat tctccttgat aatcacacgc aacattgctc
2851 tgacagagtt ctgtacacct gtttgtctcg tgcagttgat tccatccact
2901 tcatcaatac tggtcccaac aattcagaat tttgggataa gcttgaagca
2951 acaccatatc tcaaagcctt cattgatgtc tatagggatg aaaaaactga
3001 aatgctaaat tctaaacctg ctgatgacag tccaactgag cccgaagcac
3051 ctgttacaca tttcccaata gcaaatggaa ataacttaga gaaattagct
3101 tctgctttgc ctgaaaaatt tgctagggag atttatgaca agcatcacgg
3151 ctactccaac acaatccaaa ctgagaaccc tgtggtccaa cttttccaac
3201 atcaacaagc gaaagacgag acactcttct gggctacaat tgaagctaga
3251 ttgtccataa caactcctga agcaaacctc agagaatttt ttcttaagaa
3301 agatgttggg gacattctct tcttcaatta ccacaatgcg atgtgcttgc
3351 ctgccgaccc tgttgacttt gaagaaaaga cctgggagat ttgtgctgct
3401 gaagtaaaaa acacttatct tgccaaaccc atggccaatc ttattaatgc
3451 agcaagtaga caatcacccg actttgactc taataagatc tcattattcc
3501 taaagtctca atgggtgaaa aaagtggaaa aacttggagc tatcaaatca
3551 aaacctggtc agaccatagc tgcttttatg caacaaacag tcatgttgta
3601 cggtactatg gccaggtact taatgaaaat gcgccaaaga ttccagccaa
3651 aacacatatt catcaattgt gaaaccacaa ctgatgatct caataaattt
3701 gtcaaagatg gctggaactt taacagaacc gcccaaacaa atgacttcac
3751 tgcttttgac cagtcacaag atggagcaat gcttcaattt gaagtcatga
3801 aagcaaaatt ttttaacatt ccagctgatg tcattgaagg ctacatcaac
3851 atcaagctga atgctaaaat tttccttgga acactctcaa taatgagact
3901 ttctggtgaa ggtcccacat ttgacgctaa cactgagtgt tcgattgcat
3951 acactgccac aagattccat attgacaata ctgttaagca agtgtatgcc
4001 ggtgacgaca tggcattaga tggagttgtg agtgaaaaga aatcattcag
4051 gaagttgcaa aatctactaa aactcacttc taaaacgctg tacccaaaac
4101 aggttaaagg ggattacgct gaattttgcg gttggacatt cacaccaggg
4151 ggtataatta aaaatccact taaaatgcat gcctcaatta tgctgcaaga
4201 agccattggc aatctgcaca cagcagccag atcttatgca atcgacatga
4251 agcattcata ccaaatgggt gaccaactgc acgactacct aaccctcgat
4301 gaagctgaac aacatttcct agctgtgaga aagcttcaca aactccatca
4351 aggcgaggcc atgcgtcttg gggagaaaag tccaccaaga tcaacccatt
4401 aaggggttaa gttttcccca gtttgaaatg gaaagatcaa ctttgattaa
4451 tttacttcta ttacacaaat ttgaacacaa gattaacact gaaggaatca
4501 ttgttgtgca cggaattgct ggaactggga aaaccacatt gcttaggact
4551 ttattttctg cataccctag cttagttata ggttcaccta ggccttgtta
4601 cttagataaa gctaataaaa tttcacaagt ttgcctttct tgttttccaa
4651 ataccttgtg tgacattgtt gacgagtacc atctcttaga aagttttcct
4701 gaaccaaaac tagccatttt tggtgacccc tgtccccgca cttacattga
4751 aaggttgaga atacccaact acacatcctt cagaacacac cgatttggca
4801 aatccactgc tgctctacta aacaagttat ttgatcttaa cattgagtca
4851 gtcaaagcac aagacgacac agtagaatac tttgatcctt tcgcagtgga
4901 cccctctgaa cacatttctg cttcagaaaa agaagttttg gaatttgtag
4951 gtgatcaagt tgagactaca agctctgaag aactagctgg tctcgagttt
5001 agagaagtta ctttctactg taccacactt gctggtgctg ttcaagaaaa
5051 tcctgccaaa accttcattt cactcactag acacacttca aagctcacaa
5101 ttggtgaact aaatgccagg tctgactcct agagctgatc ttactgacac
5151 gtacaaaatc attgctatag cctttctact gtcagcttgc atttacttcc
5201 aaaacagtca ttatcaacca gttgcaggtg ataatttgca cagactaccc
5251 ttcggtggtc agtatcaaga cggaactaag aagatttctt actttccgca
5301 gcaacaatcc tactttcact caggaaacaa gcttaatgtc ctcatactta
5351 tcttcattct tacactgggt attgtcctca ccaataaatt tagttttagc
5401 attagccgta atactcacca gcatcattgc tacaacacac attctgcaac
5451 ccaaacaggt caatcagtgc caggtcatca ttgacggtgc agccatagtt
5501 ataacaaatt gtccaaacac acccgaagtt cttaaagcaa tcaacttctc
5551 cccttggaac gggttaagtt ttcctcaatt gtgaaatcat attcattatc
5601 tagttaaatt taaacaattt aactcaacta tggaaaacca acctacagct
5651 tctaacccat cagatgcacc accaactgct actcaagctg gtgcccagag
5701 cccagctgac ttctcaaatc ctaatacagc tccttcccta agtgatttga
5751 agaagatcaa atacgtgtca actgtcactt cagttgccac gcctgctgaa
5801 attgaggccc ttggcaagat ctttattgcc atgggtttag cagccaatga
5851 gaccggacct gccatgtggg acctcgctcg tgcttatgct gatgtgcaaa
5901 gttcaaaatc tgcacaactt ataggtgcca caccatccaa ccctgctttg
5951 tctagacgtg cacttgctgc acagtttgat cgtatcaata tcacacccag
6001 acaattctgc atgtattttg caaaaattgt ttggaacata ctgttagaca
6051 gcaatgtgcc acctgccaac tgggcaaaat tgggctatca ggaagatacc
6101 aagtttgctg cttttgactt ttttgatgga gtcacaaacc cagctagtct
6151 acagcctgca gatggcctaa tcaggcagcc caatgaaaaa gagcttgctg
6201 ctcactcggt tgctaaatat ggtgcccttg cccgccagaa aatatccact
6251 ggtaactaca tcaccaccct tggtgaagtt acacgtggtc acatgggcgg
6301 agccaacact atgtacgcaa ttgatgcacc tcctgaactt taaacactcg
6351 aaacttaatc agagtggggt tttctatagt ttattttccc ttagtatcta
6401 aatctactaa ataaaaaaa