Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate Korean P5 protein gene, complete cds.
ACC No: HQ670667
Dated: 2011-06-27 | Length: 2814 | CRC: -1137607987
ID HQ670667; SV 1; linear; genomic RNA; STD; VRL; 2814 BP.
XX
AC HQ670667;
XX
DT 27-JUN-2011 (Rel. 109, Created)
DT 27-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE Rice black streaked dwarf virus isolate Korean P5 protein gene, complete
DE cds.
XX
KW .
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OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC Fijivirus group 2.
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RN [1]
RP 1-2814
RA Wang Y., Choi J.Y., Roh J.Y., Je Y.H.;
RT ;
RL Submitted (02-DEC-2010) to the INSDC.
RL Department of Agriculture Biotechnology, College of Agriculture and Life
RL Sciences, Seoul National University, 599 Gwanakno, Gwanak-gu, Seoul
RL 151-742, Korea
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FH Key Location/Qualifiers
FH
FT source 1. .2814
FT /organism="Rice black streaked dwarf virus"
FT /host="Oryza sativa L."
FT /isolate="Korean"
FT /mol_type="genomic RNA"
FT /country="South Korea"
FT /db_xref="taxon:10990"
FT CDS 1. .2814
FT /codon_start=1
FT /product="P5 protein"
FT /note="ORF5"
FT /protein_id="AEI60138.1"
FT /translation="MTYSKVKMTTDPSEMSLKKVLFDPTNEIRILNHEQADNTLLTTMM
FT IVHEFSDLTTRDSVVPQIAEMAKNEINQTIDSIVDSVSTAFVDHYHEIIDKNAKLGNPL
FT SPNFKNVISINTCIPGLETLYVEREKWELLNRLYRLNKKLSQKYPLDDLLKGHFPDIST
FT GDETTDEYISTIIIILEVFVGILTINSVYGGAIFSVLVLMSDHSSYLFIMCLLLHAIVQ
FT AVKIYLGKRESEVSEGKPSYVDKVKNDDVKDALINDTMFIFANTTKEDISQFFDVSFKV
FT HTHKSSEQHPFRSGFISMLTKITKIQGIKEEVKFVGYLDGISKDELVGASGKKLSASQR
FT HAIGTKYDDKTQTLIISHPISKDAFSRLEQLGFLKDGLLSKDDFLKIPIDFTTVNFDKM
FT ETLCSYVTPFAINADLKHASQMSYNWKSLTTEKRPYQFLKEGMSVNFYDPIFECFFPNH
FT FIKAVKKDAIAIDPEQIVGYEELENFATLVEKHDDYSYNRTDAYSILKFLHEGHHSCGC
FT AEYFAGFISDYLTSIEVLNHIKDSKLSKLDYHLKQEYESLLKKTRRQDVLRMPVSEHAD
FT YFARCAYNESFFDIDFCFLTDGECHSLVVRFTKRKPYFRFKDDKLDKLNVLSLYDLVVN
FT CNHGELSSASRVGWNLVDLDSMGSDENIGRITRKPSSKTRQFTYDLMMVNFHGSVTQYV
FT IPEWLGESITLYEEKHEGAALFGRSSLFSTMSCLAIHLISNYKLIKCFENSSNKLVSFM
FT DGIISAMSTNIEFSPFKNTVLNNLKKCTQTIDYSNAKNSTSPSSSRSKSFRSYLRSSRP
FT NHIYDKISACISKKQNGMFSSEEMCMPYTLRKFGRLGIDDDDCELSDAISSREELYNNH
FT PCALRLRNIGHFVFGKHFRCKACRNNYGTSFELSLCQLGHQETAIETVRSNTITSQSRT
FT KLQPSST"
XX
SQ Sequence 2814 BP; 916 A; 538 C; 505 G; 855 T; 0 other;
hq670667 Length: 2814 27-JUN-2011 Type: N Check: 4382 ..
1 atgacatatt cgaaagtgaa gatgaccaca gatccttccg aaatgtctct
51 gaaaaaagtg ctcttcgacc caaccaacga aattagaatt ctcaaccacg
101 aacaagccga taacacacta cttaccacaa tgatgatcgt tcacgaattc
151 tccgacctaa cgacccgcga ctcagtagtc cctcaaatcg ctgaaatggc
201 aaaaaatgaa attaaccaaa caattgactc gatcgttgat tcagtcagta
251 ctgcgtttgt tgaccattac catgaaatca ttgacaagaa tgctaagttg
301 ggaaatcctc tttctccaaa tttcaaaaac gtgatatcta taaacacatg
351 tatccctggt ctagaaactt tgtacgttga acgtgagaaa tgggaattac
401 tcaatcgttt gtatcgatta aacaaaaagt taagccaaaa atatcctttg
451 gatgatctgc ttaaaggaca ttttcctgac atttcaacag gtgacgaaac
501 cacggatgag tacatttcaa ctataatcat tattcttgaa gtttttgttg
551 gcatacttac tattaatagt gtttacggtg gtgcaatttt cagtgttctt
601 gttcttatgt cagatcattc aagctatctt ttcatcatgt gtttactttt
651 gcatgcaata gttcaagctg tcaagattta cctaggcaaa cgagagtcag
701 aagttagtga aggaaagcct tcttacgttg ataaagtcaa aaacgatgat
751 gttaaagatg ctttgattaa tgacaccatg tttattttcg ctaatactac
801 aaaagaagat atttctcagt ttttcgacgt ttcatttaaa gtgcacaccc
851 ataagtcttc agaacaacat ccctttcgct ctggatttat ttcaatgttg
901 accaaaatta ccaagattca aggaattaaa gaggaagtaa agtttgttgg
951 atatttagac ggtataagca aagacgaatt agttggtgct tcaggcaaaa
1001 agttgtcagc ttcgcaaaga catgctattg gaacgaaata cgatgacaag
1051 actcaaactt taattatcag tcatccgata tcgaaagatg ctttttctag
1101 gctagaacaa ctaggcttct tgaaagatgg acttctgtct aaagatgatt
1151 ttttgaagat accaattgat ttcacgactg tcaattttga taagatggaa
1201 actttgtgta gttatgtcac tccttttgct atcaatgccg atcttaaaca
1251 tgcttcacaa atgtcttaca attggaaaag tctcactact gaaaaacgtc
1301 cctatcaatt tctaaaagaa ggaatgagcg taaacttcta cgatcctatc
1351 tttgaatgct tttttccaaa ccattttatt aaagcagtca aaaaagacgc
1401 cattgcaatt gaccctgaac agatagttgg atacgaagaa cttgaaaatt
1451 ttgcaacgct tgtagaaaaa cacgatgatt attcttacaa tagaactgac
1501 gcttactcca ttttgaaatt tttacacgaa ggacatcaca gctgtggctg
1551 tgcagaatac tttgctggtt ttatctcaga ttacctaacc tcaattgaag
1601 tgctaaacca cattaaggat tccaaactgt caaaactcga ttatcatttg
1651 aaacaggaat acgagtcact acttaagaaa acacgacgtc aagatgttct
1701 tagaatgcca gtatctgaac atgcagatta ttttgctcga tgcgcttaca
1751 acgaatcgtt ctttgacatt gatttttgtt tcctgacaga tggtgaatgt
1801 cattctcttg tggtaagatt cactaaacgt aaaccgtatt ttagattcaa
1851 agatgataag ttggacaagt tgaatgttct ttcgctgtat gacttagtcg
1901 ttaactgtaa tcatggtgaa ttgtcctcag caagtcgtgt cggttggaac
1951 ttagtagacc tggattctat gggatcagac gaaaatattg gacgcattac
2001 tagaaaacca agtagcaaga cacgtcaatt cacttacgac ttaatgatgg
2051 taaatttcca cggttcagtt acacaatacg tgattccaga atggcttgga
2101 gagagtatta ctttgtatga agagaagcat gaaggtgcag cgttgttcgg
2151 aagatcaagt ttgttttcaa ccatgagctg tttggccata cacttaatat
2201 ctaactacaa gctcatcaag tgtttcgaga atagttctaa caagttagtt
2251 tcttttatgg acggtataat cagcgcgatg tctacaaata ttgagttttc
2301 tcctttcaaa aatactgttt tgaacaatct taagaaatgc actcaaacca
2351 ttgattacag caatgcgaag aattccacat cacccagttc cagtcgaagt
2401 aagtcttttc gttcctactt acgatcttct cgaccaaacc acatttatga
2451 caaaatttcc gcttgtatct caaagaaaca aaacgggatg ttctcatcag
2501 aggaaatgtg tatgccttat actctcagaa aatttggcag attgggaatt
2551 gacgatgacg actgtgaact gtcagatgct atctcatcaa gggaagaatt
2601 atacaacaat catccctgtg cgttgcgact cagaaatatc ggacattttg
2651 tcttcggcaa acattttaga tgtaaggcat gtcgtaacaa ttacggaact
2701 agcttcgaac tttccttgtg tcaactggga catcaagaga cagcaattga
2751 aacggtacga tccaacacaa ttactagtca atctcgaaca aaacttcaac
2801 catcttcaac gtga