Sequence of DPV Honeysuckle ringspot virus
Honeysuckle ringspot virus isolate California, complete genome.
ACC No: HQ677625
Dated: 2011-09-14 | Length: 3956 | CRC: -551739693
ID HQ677625; SV 1; linear; genomic RNA; STD; VRL; 3956 BP.
XX
AC HQ677625;
XX
DT 16-JAN-2011 (Rel. 107, Created)
DT 14-SEP-2011 (Rel. 110, Last updated, Version 3)
XX
DE Honeysuckle ringspot virus isolate California, complete genome.
XX
KW .
XX
OS Honeysuckle ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-3956
RX PUBMED; 21562880.
RA Gulati-Sakhuja A., Rains L., Tian T., Liu H.Y.;
RT "The complete nucleotide sequence and genome organization of a novel
RT carmovirus - honeysuckle ringspot virus isolated from honeysuckle";
RL Arch. Virol. 156(9):1635-1640(2011).
XX
RN [2]
RP 1-3956
RA Gulati-Sakhuja A., Sears J., Rains L., Tian T., Liu H.-Y.;
RT ;
RL Submitted (03-DEC-2010) to the INSDC.
RL Virology, USDA-ARS, 1636 E Alisal Street, Salinas, CA 93905, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3956
FT /organism="Honeysuckle ringspot virus"
FT /host="honeysuckle"
FT /isolate="California"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /db_xref="taxon:943272"
FT gene 34. .2676
FT /gene="P101"
FT CDS 34. .2676
FT /codon_start=1
FT /transl_except=(pos:766. .768,aa:OTHER)
FT /transl_except=(pos:2326. .2328,aa:OTHER)
FT /gene="P101"
FT /product="p101"
FT /note="double read-through protein"
FT /db_xref="GOA:E7EEK3"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:E7EEK3"
FT /protein_id="ADV15469.1"
FT /translation="MLLDFCFKAIIAPPIVGTVVAMGLAGLTVRTTIGVVEFEARAVRT
FT VVDYITSKGKTLPGKPKYPKAKVNVFLEELAEVDGDDRELPDLLETVEVKKEDGEGKMV
FT VVRTKAKVNRHTRGRFVHRLVCATKNHLGGTPNNSTANKLVAYKFMVGKCKEQHLVETH
FT TREVCSLAMAAIFTPDVHDVNMHLALNSHAAYRRRVALAQAQEVQSWQLRLLKHPLKYD
FT SWERAWLWANGAPTQEPFRFIKXGGLCYFEGVDTKIRRGSHPLMIEVEKDGPHKLRKLY
FT AQNVMSSGLDYRVHNHSFQNLRRGLLERVFYVESKDKKELVDCPQPNQAAFKELAYLRK
FT QFARYAGIHTRISTQDMVDCYHGRKKSIYQNAADSLSDRPLDRKDAALKTFIKAEKFCI
FT NLKPDPAPRVIQPRSVRYNVELGRYLKKYEHSAYRALDKIWGGTTVMKGYTVEQVGEHI
FT ASAWGEFQIPVAVGFDMSRFDQHVSVPALQFEHSCYMKSFKHDRELQQLLSWQLTNFGV
FT AFADDGMIRYKKAGCRMSGDMNTALGNCLLACMITKHLMRDLKCRLVNNGDDCVLFCES
FT RDLGSVVSNLTTGWREFGFNCIAEEPVYILEEVRFCQMAPVFDGESYVMVRDPRVSISK
FT DAFSLVHWNNSKNALQWMKSVGLCGERITGGIPVVQEFYRKYQQIAGDVRLPKLNVDIE
FT SSGVYMLANKMKRAFKEPTDEARFSFYLAFGIIPDLQIAVEKSIRDIPEDVEFGPCDKL
FT ADYTLKWTFNQXKQKMTLAFKVTWREVATGERRREEYQSQKMLSTNGHLMVLSGVLIIF
FT LLIKWKIPLTLISVEVDYKPPVILLFIIFITLQLIYQYTTALLAEKVVYNTTEANNTRV
FT QYISIKQKQ"
FT gene 34. .2328
FT /gene="P87"
FT CDS 34. .2328
FT /codon_start=1
FT /transl_except=(pos:766. .768,aa:OTHER)
FT /gene="P87"
FT /product="p87"
FT /note="RNA-dependent RNA polymerase; readthrough protein"
FT /db_xref="GOA:E7EEK4"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="UniProtKB/TrEMBL:E7EEK4"
FT /protein_id="ADV15468.1"
FT /translation="MLLDFCFKAIIAPPIVGTVVAMGLAGLTVRTTIGVVEFEARAVRT
FT VVDYITSKGKTLPGKPKYPKAKVNVFLEELAEVDGDDRELPDLLETVEVKKEDGEGKMV
FT VVRTKAKVNRHTRGRFVHRLVCATKNHLGGTPNNSTANKLVAYKFMVGKCKEQHLVETH
FT TREVCSLAMAAIFTPDVHDVNMHLALNSHAAYRRRVALAQAQEVQSWQLRLLKHPLKYD
FT SWERAWLWANGAPTQEPFRFIKXGGLCYFEGVDTKIRRGSHPLMIEVEKDGPHKLRKLY
FT AQNVMSSGLDYRVHNHSFQNLRRGLLERVFYVESKDKKELVDCPQPNQAAFKELAYLRK
FT QFARYAGIHTRISTQDMVDCYHGRKKSIYQNAADSLSDRPLDRKDAALKTFIKAEKFCI
FT NLKPDPAPRVIQPRSVRYNVELGRYLKKYEHSAYRALDKIWGGTTVMKGYTVEQVGEHI
FT ASAWGEFQIPVAVGFDMSRFDQHVSVPALQFEHSCYMKSFKHDRELQQLLSWQLTNFGV
FT AFADDGMIRYKKAGCRMSGDMNTALGNCLLACMITKHLMRDLKCRLVNNGDDCVLFCES
FT RDLGSVVSNLTTGWREFGFNCIAEEPVYILEEVRFCQMAPVFDGESYVMVRDPRVSISK
FT DAFSLVHWNNSKNALQWMKSVGLCGERITGGIPVVQEFYRKYQQIAGDVRLPKLNVDIE
FT SSGVYMLANKMKRAFKEPTDEARFSFYLAFGIIPDLQIAVEKSIRDIPEDVEFGPCDKL
FT ADYTLKWTFNQ"
FT gene 34. .768
FT /gene="P27"
FT CDS 34. .768
FT /codon_start=1
FT /gene="P27"
FT /product="p27"
FT /note="replication-related protein"
FT /db_xref="UniProtKB/TrEMBL:E7EEK5"
FT /protein_id="ADV15467.1"
FT /translation="MLLDFCFKAIIAPPIVGTVVAMGLAGLTVRTTIGVVEFEARAVRT
FT VVDYITSKGKTLPGKPKYPKAKVNVFLEELAEVDGDDRELPDLLETVEVKKEDGEGKMV
FT VVRTKAKVNRHTRGRFVHRLVCATKNHLGGTPNNSTANKLVAYKFMVGKCKEQHLVETH
FT TREVCSLAMAAIFTPDVHDVNMHLALNSHAAYRRRVALAQAQEVQSWQLRLLKHPLKYD
FT SWERAWLWANGAPTQEPFRFIK"
FT gene 2310. .2513
FT /gene="P7"
FT CDS 2310. .2513
FT /codon_start=1
FT /gene="P7"
FT /product="p7"
FT /db_xref="GOA:E7EEK6"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/TrEMBL:E7EEK6"
FT /protein_id="ADV15470.1"
FT /translation="MDVQPVEAKDDTRIQSDVERGGNRGKTKGRISIAKDAINKRASDG
FT SIGGTYYIFADKVENTVNFNFG"
FT gene 2338. .2676
FT /gene="P13"
FT CDS 2338. .2676
FT /codon_start=1
FT /gene="P13"
FT /product="p13"
FT /db_xref="UniProtKB/TrEMBL:E7EEK7"
FT /protein_id="ADV15471.1"
FT /translation="MTLAFKVTWREVATGERRREEYQSQKMLSTNGHLMVLSGVLIIFL
FT LIKWKIPLTLISVEVDYKPPVILLFIIFITLQLIYQYTTALLAEKVVYNTTEANNTRVQ
FT YISIKQKQ"
FT gene 2676. .3710
FT /gene="P37"
FT CDS 2676. .3710
FT /codon_start=1
FT /gene="P37"
FT /product="p37"
FT /note="coat protein"
FT /db_xref="GOA:E7EEK8"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="InterPro:IPR013669"
FT /db_xref="UniProtKB/TrEMBL:E7EEK8"
FT /protein_id="ADV15472.1"
FT /translation="MDTLRNSKKVAQLSASGVLWATKYMTRGWQSLSTNQKRLARAALN
FT LPLTPQVISPVRPRVRNPQPRGAANGLGQAGKTQTITRSEYVADVVKTVGATPTFTTWV
FT INPRSVRSFPGTSVCSLGYEKYRVVNFRVRYSNSLSDDVSGKVSIGFTPDSSDPIPTNK
FT TQLYQMRVSMDTAAKESKTLTIPTDNATRYLRDSSIDDAKVVDFGRVVLATYGFDQSAP
FT EVIGEIHFEYTLVLSDPNFVTTLTQKGTNSEYEGPLYGALERTNSAITLTLQAPGNWLV
FT VWISPEAFNSPTVTGSGASGTVSYQSGGSSMAVTTVIANLPGAQVTAPTTTAVKELQWY
FT VSRL"
XX
SQ Sequence 3956 BP; 1102 A; 855 C; 1071 G; 928 T; 0 other;
hq677625 Length: 3956 14-SEP-2011 Type: N Check: 3998 ..
1 ggggttttcc ggttggggcc cagttcactg acgatgcttc ttgacttctg
51 tttcaaagcc atcattgctc cccccattgt ggggaccgtg gttgctatgg
101 gtctggcagg actcacagtg agaacaacaa tcggtgtggt tgaattcgag
151 gcacgggcag ttaggaccgt cgtcgattac atcaccagca aagggaaaac
201 attaccaggg aagccgaaat acccgaaggc taaggttaat gtcttcctcg
251 aagagctggc agaggtggac ggtgatgatc gtgagctgcc cgatctcctc
301 gaaacggtcg aggttaagaa ggaggatggc gaagggaaaa tggtcgttgt
351 gcgaacaaag gccaaggtta accgccatac cagaggtagg tttgtgcata
401 ggctagtttg cgcaaccaag aaccatctgg gggggacgcc gaataacagt
451 acggccaaca agctggtggc gtacaaattc atggtgggga aatgcaagga
501 gcaacacctt gtagagaccc acaccaggga ggtgtgctcg ctggctatgg
551 ccgccatatt tacccccgac gtgcatgatg tcaacatgca cctcgcactt
601 aacagtcacg ccgcctacag acggcgcgta gccttggctc aagcgcaaga
651 ggtgcagagc tggcaactaa ggctactaaa acaccctctc aaatatgata
701 gttgggagag ggcgtggtta tgggccaatg gcgctccaac ccaggagccc
751 tttaggttca taaaataggg gggtctttgc tacttcgagg gtgtggatac
801 aaaaattcgt aggggatcac accctctgat gatcgaagta gaaaaagatg
851 gtccccacaa acttaggaaa ctctacgcgc aaaatgtgat gagcagcgga
901 cttgactacc gtgttcacaa tcattcattc caaaaccttc gaagaggtct
951 cctcgaaaga gttttctacg tggaaagtaa agataagaag gagttagtcg
1001 attgccccca acccaaccag gctgctttca aggagttggc ttacttgagg
1051 aagcaatttg ctagatacgc tggaattcat accaggatct ccacccaaga
1101 tatggtggat tgttatcatg gcaggaagaa aagcatctat caaaacgcag
1151 ctgatagttt gtctgaccgg cccctggacc ggaaggatgc tgcactcaaa
1201 acattcatta aagctgaaaa attctgtatt aatctgaaac ccgacccagc
1251 tcccagagtt atacaacctc gaagcgtgcg ttacaatgtg gaattaggta
1301 gatacctaaa gaaatatgaa cattccgctt accgagcgct agataaaatc
1351 tgggggggga ctacagtgat gaagggatac acggtagaac aggtgggaga
1401 gcatatagcc tctgcgtggg gagaattcca gattcccgtt gcagttggat
1451 ttgacatgag cagattcgac caacatgttt ctgtgcctgc gctccagttc
1501 gaacactcct gttacatgaa atccttcaaa catgatcgag aacttcaaca
1551 gttgttatcc tggcaattaa caaactttgg agttgcgttc gctgatgatg
1601 gtatgatccg ttacaagaag gccgggtgtc gtatgagtgg tgacatgaat
1651 acggcactag gcaattgtct ccttgcctgt atgattacga agcacctgat
1701 gagagacctc aagtgccggc ttgtgaacaa tggggatgac tgcgtgttgt
1751 tttgcgaatc tagggatctc ggctcagtcg tgagcaattt aacgactggt
1801 tggcgggaat ttggattcaa ttgcatcgca gaggaacctg tttacattct
1851 ggaggaagtg aggttttgtc agatggcgcc cgtatttgat ggggagtcat
1901 atgtgatggt gagagaccct cgggtaagca tcagcaagga cgctttttcc
1951 ttggtccatt ggaacaacag taaaaatgcc ctccaatgga tgaagtcggt
2001 cggtttgtgt ggagagcgta taacaggggg gattccagtc gttcaggagt
2051 tctaccggaa gtatcaacaa attgctggag acgtgcgctt gccgaagttg
2101 aacgtagata tcgagtctag cggcgtgtat atgttggcta acaaaatgaa
2151 aagggccttt aaagaaccta ccgatgaggc taggtttagt ttctacttgg
2201 cctttggtat catcccggat ttgcaaattg cagtggagaa atccattagg
2251 gatataccag aggatgtaga gtttgggccc tgtgataagt tggcagacta
2301 tacactcaaa tggacgttca accagtagaa gcaaaagatg acactcgcat
2351 tcaaagtgac gtggagagag gtggcaacag gggaaagacg aagggaagaa
2401 tatcaatcgc aaaagatgct atcaacaaac gggcatctga tggttctatc
2451 gggggtactt attatatttt tgctgataaa gtggaaaata ccgttaactt
2501 taatttcggt tgaagttgac tataagcccc cggtgatttt gttattcatt
2551 atcttcataa ctcttcagtt gatttaccag tacaccacag cactcttggc
2601 agagaaagtt gtctacaata cgacggaagc aaacaacacc agggttcagt
2651 acattagcat taaacagaag caataatgga tactttgagg aacagcaaga
2701 aggtcgcgca actctccgcg agtggagttc tctgggctac aaaatacatg
2751 accagaggat ggcaaagttt gagtaccaac cagaaaaggt tggctagagc
2801 tgcgctcaac ttacccttga ccccacaggt gatctcaccg gtgaggccga
2851 gggtaagaaa cccacagccg agaggtgctg cgaacggatt agggcaagca
2901 ggtaagactc agacaatcac gagatcagaa tacgtggcgg atgttgtcaa
2951 aactgtgggt gcaactccca cattcactac ttgggttatt aatcctcgta
3001 gtgttcgtag ctttcctggc accagtgtgt gcagccttgg atacgagaag
3051 tatagagtgg tgaactttcg agttcgctac agtaattcct tgtctgatga
3101 cgttagtggg aaggtgtcaa ttgggttcac tccggactca agtgacccta
3151 ttcccactaa taagacgcaa ctctatcaga tgagagtatc catggacact
3201 gctgccaagg agagcaagac gttgacaata ccgacagaca acgccacgcg
3251 ttatctcaga gattcatcca tcgatgatgc caaggtggtg gatttcggaa
3301 gggtcgtgtt agccacatat gggttcgatc agtcagctcc agaggtgatc
3351 ggagaaatac acttcgagta cactctggtg ctttcggacc ccaacttcgt
3401 gacgacgcta acacagaaag gcacaaatag tgaatatgaa ggcccgttat
3451 acggcgcatt agagcgaact aattcagcaa tcacgctaac cctgcaagca
3501 ccagggaatt ggctggttgt ttggattagc ccagaggcct tcaattcacc
3551 gaccgtaaca ggatccgggg caagcggaac tgtgagctat caatcaggag
3601 gcagtagtat ggctgtaact actgtcatcg ccaacttgcc aggtgcgcag
3651 gtgactgcac caaccacgac tgccgttaaa gagcttcaat ggtatgtctc
3701 aagactatag acgggatgag cttctggggg ctgccaccct cgcctcatgc
3751 gcattgcctg ctctgggcgc atgtggaagc tgatatagtt gagagcttcg
3801 tggaaggatg tggaaaccaa gggagggaga tatccaggga ggatgtcgga
3851 gttgtaagga taaaatacct aagcttcatc aggttaggtt gggcttccga
3901 tgcaacaaaa caccagtaga taaatagggg gggatccagg ggatccttct
3951 ccgccc