Sequence of DPV Blueberry scorch virus

Blueberry scorch virus isolate TN-CG03-10 coat protein gene, partial cds.

ACC No: HQ690957

Dated: 2011-06-29 | Length: 1215 | CRC: 1290933248

                
ID   HQ690957; SV 1; linear; genomic RNA; STD; VRL; 1215 BP.
XX
AC   HQ690957;
XX
DT   28-JUN-2011 (Rel. 109, Created)
DT   29-JUN-2011 (Rel. 109, Last updated, Version 2)
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DE   Blueberry scorch virus isolate TN-CG03-10 coat protein gene, partial cds.
XX
KW   .
XX
OS   Blueberry scorch virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
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RN   [1]
RP   1-1215
RX   PUBMED; 21584717.
RA   Moretti M., Ciuffo M., Gotta P., Prodorutti D., Bragagna P., Turina M.;
RT   "Molecular characterization of two distinct strains of blueberry scorch
RT   virus (BlScV) in northern Italy";
RL   Arch. Virol. 156(7):1295-1297(2011).
XX
RN   [2]
RP   1-1215
RA   Turina M., Ciuffo M.;
RT   ;
RL   Submitted (07-DEC-2010) to the INSDC.
RL   IVV, CNR, Strada delle Cacce 73, Torino, TO 10135, Italy
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1215
FT                   /organism="Blueberry scorch virus"
FT                   /host="Vaccinium ashei"
FT                   /isolate="TN-CG03-10"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="May-2010"
FT                   /db_xref="taxon:31722"
FT   CDS             <1. .923
FT                   /codon_start=3
FT                   /product="coat protein"
FT                   /protein_id="AEI70729.1"
FT                   /translation="PKEEPSRVAGEMDAKAAGGVIPPVVPIVPPGGTPPVVTPAVGAAN
FT                   AEVQNRESILEQRLTMLIETLNKQQHNSNLKNVAFEIGRPDLEPVPAMKRNPANPYGRF
FT                   SIDELFKMKTSAVSNNMATTEQMAKITSAIAGLGVPTEEVAGIIVRMAFMCASVSSSVY
FT                   LDPDGSIEFEGGAVSVDSIAAIMEREASLRKVCRLYAPVVWNFMLVKNQPPSDWQAMGF
FT                   SFETRFAAFDTFDYVTNEAAVQPVEGLIRRPTPAECIAHNAHKRLALDRSNRNEKYTNL
FT                   ETEYTGGLQGAEIVRNHRNAGNGSA"
XX
SQ   Sequence 1215 BP; 307 A; 270 C; 344 G; 294 T; 0 other;

hq690957 Length: 1215  29-JUN-2011  Type: N  Check: 1756  ..

       1  ctccgaaaga ggaaccaagt agagtcgccg gggaaatgga cgcgaaggct
      51  gcggggggag tcatccctcc cgtggttccg atcgttccac ctgggggcac
     101  accaccggtc gtgacacctg ctgttggtgc cgccaatgct gaagtccaga
     151  acagggaatc gattctcgag caaaggctga cgatgctaat tgaaactttg
     201  aataagcagc agcacaattc caacctcaag aatgtcgcat ttgaaatagg
     251  gaggcccgat ctggagccag tcccagcaat gaagcgcaac ccggccaacc
     301  cttacggccg tttctcaatt gatgagctct ttaaaatgaa aacgagtgct
     351  gtgtcaaata acatggccac cactgagcag atggcaaaaa ttacgtctgc
     401  aattgcggga ctcggagtcc cgactgagga ggttgcggga attattgtgc
     451  gtatggcctt catgtgtgct agtgtgagca gttctgtcta cctggatccc
     501  gacggaagca ttgagtttga ggggggagca gtgtcggtcg attccatcgc
     551  agccataatg gagagagaag ctagtcttcg caaagtgtgc aggttgtacg
     601  cgccagtcgt gtggaatttc atgctagtca aaaatcaacc gccgtctgat
     651  tggcaggcaa tgggtttctc gtttgaaact agatttgccg catttgacac
     701  ctttgactac gtcaccaacg aggctgctgt ccagcctgtt gaagggctca
     751  tacgaaggcc cacaccggct gagtgcattg cgcacaatgc tcataagcgt
     801  ttggctcttg acagatcaaa ccggaatgag aagtacacta atctggagac
     851  ggagtacacg ggagggcttc aaggtgctga gatcgttcgc aatcatcgaa
     901  atgcagggaa tggatcagca tgatcagcgt agattattag ctttaataaa
     951  tgtgtgtcgt gcttttggtt tgtgtgattt gggagttgta gtgtgtattt
    1001  tcaataaact gccccatcgg gaagttggca atggacgttc gagttatgct
    1051  cggaaacgtc gggccaaatc catcgggcgt tgtgagcggt gctaccgcgt
    1101  ttacccgcct attggggtat ctaagtgtaa caaccggact tgtagaccgg
    1151  gtatttccta taatgaaaaa gtggctaatt tcatttggta cggagtaact
    1201  gaggtgatac cgcaa