Sequence of DPV Banana bract mosaic virus

Banana bract mosaic virus isolate Card-5 coat protein gene, partial cds.

ACC No: HQ709163

Dated: 2011-11-06 | Length: 900 | CRC: -269231685

                
ID   HQ709163; SV 1; linear; genomic RNA; STD; VRL; 900 BP.
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AC   HQ709163;
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DT   06-NOV-2011 (Rel. 110, Created)
DT   06-NOV-2011 (Rel. 110, Last updated, Version 1)
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DE   Banana bract mosaic virus isolate Card-5 coat protein gene, partial cds.
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KW   .
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OS   Banana bract mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RC   Publication Status: Available-Online prior to print
RP   1-900
RA   Siljo A., Bhat A.I., Biju C.N., Venugopal M.N.;
RT   "Occurrence of Banana bract mosaic virus on cardamom";
RL   Phytoparasitica 0:0-0(2011).
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RN   [2]
RP   1-900
RA   Bhat I.;
RT   ;
RL   Submitted (15-DEC-2010) to the INSDC.
RL   Plant Pathology, Indian Institute of Spices Research, PB. No 1701,
RL   Marikunnu Post, Calicut, Kerala 673012, India
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FH   Key             Location/Qualifiers
FH
FT   source          1. .900
FT                   /organism="Banana bract mosaic virus"
FT                   /host="cardamom"
FT                   /isolate="Card-5"
FT                   /mol_type="genomic RNA"
FT                   /country="India:Idukki"
FT                   /isolation_source="infected leaves"
FT                   /collection_date="Oct-2009"
FT                   /db_xref="taxon:45661"
FT   CDS             <1. .>900
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /protein_id="AER42833.1"
FT                   /translation="SGTESTNDNDPSRTIDAGGSARGTQPSITTTTAPSTFGQPTTTSA
FT                   PSSSSTPPRASTQITPVRDRDVDAGSTNFIIPRIKPMTGKMRLPRYRGKTAINVEFLLQ
FT                   HKPDQFDLSNAIATREQYDAWCDAVKREYAVEDEEQFTTLLGGLMVWCIENGTSPNLNG
FT                   TWSMMDKGEQLVYQLKPIIENAQPTFRQIMAHFSDAAEAYITMRNVTERYMPRWGALRG
FT                   LNDISLARYAFDFYVVTSKTTNRAREAHTQMKAAAIRGSNTRLFGLDGNLGLGEENTER
FT                   HTVEDVKRDMHSLLGMKSE"
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SQ   Sequence 900 BP; 278 A; 184 C; 216 G; 222 T; 0 other;

hq709163 Length: 900  06-NOV-2011  Type: N  Check: 4509  ..

       1  tctggaacgg agtcaaccaa cgataatgac ccaagccgca ctattgatgc
      51  aggtggcagt gcaagaggaa ctcaaccatc aataaccact acaacagctc
     101  caagcacatt tggacaaccc acgactacgt cagctccatc ttcatcaagc
     151  acgccaccca gagcttccac gcaaattaca ccagttcggg atcgtgacgt
     201  tgatgctggt agtacaaact ttatcatccc tcgaattaaa ccgatgactg
     251  ggaaaatgcg tctcccaagg tatcgaggaa aaactgcaat taacgtcgag
     301  ttcttgcttc aacataaacc tgatcagttt gatttgtcaa atgctatcgc
     351  aactagggag caatatgatg catggtgtga tgctgtaaaa cgtgagtatg
     401  ccgtagagga cgaagaacag ttcacaacct tgttaggtgg tttgatggta
     451  tggtgcatag agaatgggac atcaccaaat ttgaatggta catggagtat
     501  gatggataag ggtgagcaat tagtttacca gttaaagcct attattgaga
     551  atgctcagcc tacttttcgg caaatcatgg cacatttttc tgatgctgct
     601  gaggcgtaca taacaatgcg caatgtcacg gagagatata tgcccaggtg
     651  gggagcactt agaggattga atgacataag cttagcccga tatgcatttg
     701  atttttacgt agtcacatca aaaactacaa acagggctag agaagcacac
     751  acgcagatga aagctgcagc tattcgtggg tcaaacactc ggttattcgg
     801  tttggatgga aatcttggac ttggtgaaga gaatacagag aggcatactg
     851  ttgaagatgt gaagcgtgat atgcactctc tgcttgggat gaaatctgaa