Sequence of DPV Soybean vein necrosis virus
Soybean vein necrosis virus isolate TN segment M, complete sequence.
ACC No: HQ728386
Dated: 2013-04-10 | Length: 4955 | CRC: 593772023
ID HQ728386; SV 1; linear; genomic RNA; STD; VRL; 4955 BP.
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AC HQ728386;
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DT 01-APR-2011 (Rel. 108, Created)
DT 10-APR-2013 (Rel. 116, Last updated, Version 5)
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DE Soybean vein necrosis virus isolate TN segment M, complete sequence.
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KW .
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OS Soybean vein necrosis virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4955
RX DOI; 10.1007/s11262-011-0621-9.
RX PUBMED; 21604150.
RA Zhou J., Kantartzi S.K., Wen R.H., Newman M., Hajimorad M.R., Rupe J.C.,
RA Tzanetakis I.E.;
RT "Molecular characterization of a new tospovirus infecting soybean";
RL Virus Genes 43(2):289-295(2011).
XX
RN [2]
RC Publication Status: Available-Online prior to print
RP 1-4955
RX PUBMED; 23550970.
RA Zhou J., Tzanetakis I.;
RT "Epidemiology of Soybean vein necrosis associated virus";
RL Phytopathology 0:0-0(2013).
XX
RN [3]
RP 1-4955
RA Tzanetakis I.E.;
RT ;
RL Submitted (18-DEC-2010) to the INSDC.
RL Department of Plant Pathology, Cell and Molecular Biology Program,
RL University of Arkansas, Plant Pathology-Plant Sciences Building, 495 N.
RL Campus Drive, Room 217, Fayetteville, AR 72701, USA
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FH Key Location/Qualifiers
FH
FT source 1. .4955
FT /organism="Soybean vein necrosis virus"
FT /segment="M"
FT /host="soybean"
FT /isolate="TN"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="Sep-2008"
FT /db_xref="taxon:980895"
FT CDS 58. .1008
FT /codon_start=1
FT /product="nonstructural protein"
FT /db_xref="InterPro:IPR000603"
FT /db_xref="InterPro:IPR006889"
FT /db_xref="UniProtKB/TrEMBL:F2Y3N4"
FT /protein_id="ADX96064.1"
FT /translation="MSNFVAKAIEMGQGMIPKSNGEIKEYQNPITESQGRHKLDLGNYK
FT GKEVDKIVKKNMELSKGSFVRDTTGSSELGVYESGTTLSSDSNLDLAAKMIVDKSNHIS
FT KWKNDVLVGNGKELIKKKLHLKPNWDSMKQFMMLSRVIVWICPVSPDTSGYLKIGIKDQ
FT CSEDKNAFVARGEGKINTPICFYFNLNWSYPKEKNTLEFCPIAIMETDQQYKKGAPLAS
FT VMYSWCKEFCGSPRYYEKSDCYVIPISPAVRFQSAAMIEACKYMIPKGSSGKAIKKQIE
FT ELGKYLEQAALDEENEEGGMESGSSFPSLVEMKPI"
FT CDS complement(1276. .4863)
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /db_xref="GOA:F2Y3N5"
FT /db_xref="InterPro:IPR005167"
FT /db_xref="UniProtKB/TrEMBL:F2Y3N5"
FT /protein_id="ADX96063.1"
FT /translation="MRIKDFFVIMLLFGLNLVFLSIFINASIRGDHEVSQETSFEELSK
FT EVMEAHEQGKIGKSLVSSRVEAFESFNKEPIETSRRPEMNDRITQTKPGIDDQMIPKHG
FT EGKREAPPPSKVDLSCANINPENCKVVGKTPFNFYYQISDSEETISCLSSKVEDLKACN
FT PQSMHVFTSAPVLPITTILNKRVLSVGSKYYIQNSIDSSSFPVQDSGNVQLGLVNIYSV
FT RLTGECNITKVSLTNPFFVTLTSSNKETFYSIKKIGADDVNLIKFSGEKTVELPSDSVD
FT GNHVLLCGDKVSEIPKIDVNKRNCLVKYKGKRYQQSACVHFNILRYLLVSIILFVPVSW
FT FLNKTKDSMFLWYDFLGIIFYPILYILNWLWRYFPMKCSNCGNFSLITHSCYDTCVCNK
FT SKAKSEHAENCPIITGKAFSKSEDQDVDDLSVEETESLTGSKKPKKASSKFRTFQLVVN
FT TKISTGFLMFVTKVLLGFLIFSQMPKTMASKTATQTISQTETQVLCVSYCSAKPGCNKF
FT LFKNEEVCIDNPKLKCNCLIRDGMINEEAYINGTRYSVSMVDNCLDRRCEFSSNKVEDL
FT LACRLGCGQLKKLKSSKLQSKALKQGIVPRGASISQIYSSLRLQDGYIDSEESLHSLGD
FT LPENKVKIEDEDIPEGVLPRQSFVYNSIVDGKYRYLISMDAIQSTGYVYSMNDAKMAPP
FT QELVVFVKEAGVTYTMKTLYYTAPISATHTHVYSTCTGNCETCRKEHPISGYQDYCIAP
FT TSNWGCEELGCLAIGEGATCGYCRNVYDLSKKYSVRQILTSHVTVKVCFKGFAGTGCQT
FT ITDSVPFQNSYYQLSIDADLHNDDLTAGSRVAVDPNGMLFKGNIANLKDSSLAFGHPQL
FT NELGVLMFAKANLELSDFTWSCAVIGNKKVDVKKCGYDTFHQYIGLEPISDYFADEIDD
FT GTMFVKKDFKIGKINLIVDLPSELFQTIAKKPKVAMVASACKGCLSCSSGINCDLEFTS
FT DSIFSCRISWEHCTSEPEQIAMKKGTNVFKLKPCFALKIQLLQKIILVPSDDESMALEF
FT ETKNVEISDPETIIDHNDDAFNEEVEYDSDTSFKSVWDYIKSPFNWVASFFGDFFEIVR
FT VLLVLTCCAVLFISISKLYEICHEYYSQEQYKKSSRKKEGDLEDDDEKKAQDDIIKSLR
FT NQVTEDTTYKRNSNKSTRKAPFDDLIIRV"
XX
SQ Sequence 4955 BP; 1572 A; 901 C; 855 G; 1627 T; 0 other;
hq728386 Length: 4955 10-APR-2013 Type: N Check: 9495 ..
1 agagcaatcg gcgcaataag aaaaataagt tggaaaggat aaactacaaa
51 tagcaaaatg tcaaactttg tagcaaaggc tattgaaatg ggacagggaa
101 tgataccgaa aagcaatgga gagataaaag aataccagaa tcctatcact
151 gagtctcaag gtagacataa attggattta ggtaactaca aagggaaaga
201 agttgacaag attgttaaga aaaacatgga attgtcaaaa ggaagtttcg
251 tgagagacac tacaggatca tctgaattag gtgtatatga gtctggtaca
301 actctgtcat cagattcaaa cctagactta gctgccaaga tgattgttga
351 caaaagcaat catataagca aatggaagaa cgatgttttg gttggcaatg
401 ggaaagaact aatcaagaaa aagctccatc tgaaacccaa ttgggacagc
451 atgaagcaat tcatgatgct ttctagagtt attgtttgga tttgccctgt
501 ttcaccagac acttcaggat atctcaaaat aggtattaaa gatcaatgtt
551 cagaagataa aaatgctttt gttgctagag gtgaaggcaa gataaataca
601 cctatatgct tttacttcaa cttgaattgg tcttacccaa aggaaaagaa
651 tacattggag ttctgcccta tagccatcat ggagacagat caacaataca
701 aaaagggtgc tcctttagca tcagtcatgt attcttggtg caaagagttt
751 tgtggatcac caaggtatta tgaaaaaagt gactgctatg tcatacctat
801 atctccagct gttagattcc aatctgcagc aatgatagaa gcatgcaaat
851 atatgatccc gaaaggttct tctggaaaag caataaaaaa gcagatagag
901 gaactaggga agtatcttga acaagctgcc ttagatgaag agaatgaaga
951 aggtgggatg gaatctggtt ctagcttccc ttctttggtg gaaatgaaac
1001 cgatttaatt taaattaaat gtttatttca ataagactta tgtttaattt
1051 taatttctat gtgtgcatgt ttgaacctaa atgaataaat gaaaacaaat
1101 aaaaattgaa aatcaaaaaa ccaaaaatag aataaggtct tcggaccaaa
1151 ttggttaaac cattttgggt ctttcgacct ctctcttttt ttgatttttg
1201 attttggatt ttaatttaaa taagattaac attctctagt ttagcctata
1251 aataactaac aaatctaact gctgatcaaa ccctaattat taaatcatca
1301 aaaggtgctt tccttgtgct tttgttggaa tttcttttgt atgttgtgtc
1351 ttcagttact tgatttctta agctttttat tatgtcgtct tgagctttct
1401 tttcatcatc atcttctaaa tctccctctt tctttctact tgatttcttg
1451 tactgctcct ggctgtagta ctcatggcag atctcataaa gtttagaaat
1501 actaatgaac agaacagcac aacatgttag gacaagtagt actctaacaa
1551 tttcaaagaa atctccaaag aatgacgcaa cccagttaaa gggacttttt
1601 atgtaatccc aaacagattt aaatgaagtg tcactatcat attcaacttc
1651 ttcattgaag gcatcatcgt tgtgatctat gatggtttct gggtcagaga
1701 tttccacatt ttttgtttca aactctaaag ccatggactc atcatctgaa
1751 ggtacaagga taatcttttg taagagttgg atctttagag caaaacatgg
1801 ttttaacttg aaaacattag tccctttttt catagctatc tgttctggtt
1851 cagatgtgca atgctcccag cttattctac aagaaaagat gctgtcagat
1901 gtgaactcta aatcacagtt tattcctgaa ctacagctta aacaaccttt
1951 gcaagctgag gcaaccattg ccacttttgg tttttttgct atagtttgaa
2001 agagttctga tggtaaatcg acaatgagat ttattttacc gattttgaag
2051 tcttttttta caaacatagt tccatcatca atttcatctg caaagtaatc
2101 tgaaataggc tctaatccta tatactgatg gaaagtatca taaccgcatt
2151 ttttaacatc tactttttta ttaccaataa cagcacaaga ccaagtgaaa
2201 tctgaaagtt ccaagtttgc tttggcaaac atcagcacac ctaattcatt
2251 cagctgggga tgtccaaaag ctaacgaaga gtcttttaaa ttagctatgt
2301 tccctttaaa aagcattcca tttggatcta cagccactct agacccagct
2351 gtaagatcat cattgtgcaa atcagcatca atacttagct gataataaga
2401 gttttggaaa ggtacactat ctgttattgt ctgacagcct gttcctgcaa
2451 atcctttaaa gcaaacttta actgtaacat gtgaggtaag tatctgtctg
2501 acagaatatt ttttagacaa gtcataaaca ttcctgcaat agccacatgt
2551 tgctccttct cctatagcca aacaacctag ctcttcgcaa ccccaattgg
2601 atgtcggtgc aatgcaataa tcttgataac cgctaatagg atgttctttc
2651 ctgcaagtct cacaattgcc tgtgcatgtt gaataaacat gggtatgtgt
2701 tgctgaaatc ggtgctgtgt aatatagggt tttcatggtg taagttactc
2751 ctgcttcttt tacgaaaact accagctctt gaggtggtgc catttttgcg
2801 tcattcatag agtacacata ccctgtagac tggatagcat ccatagaaat
2851 caaataccta tatttcccat caactattga attgtagaca aaagattgtc
2901 taggtagcac accctcaggt atatcttcat cttctatctt aactttattt
2951 tctggaagat caccaagaga atgcaagctc tcttctgaat ctatataccc
3001 atcttgaagc cttaatgagg aataaatttg actgatagat gcacctcttg
3051 gaactatccc ttgcttcaat gctttactct gaagtttgga gcttttgagt
3101 ttttttagtt gaccacaccc taatctgcat gctaaaaggt cttcaacttt
3151 attagaagaa aattcgcacc ttctatctaa gcaattgtca accatagaaa
3201 cagagtatct tgtcccattt atataagctt cttcatttat cattccatca
3251 cgaatcaaac agttgcactt cagctttgga ttgtcgatac agacttcttc
3301 atttttaaac aagaatttgt tacaaccagg ttttgctgaa caataactta
3351 cacaaaggac ttgagtttct gtttgagaaa tagtttgggt tgcagtctta
3401 ctagccattg tctttggcat ttgagaaaat atcaagaagc ccaataagac
3451 ttttgtaaca aacatcaaaa accctgtgct tattttggta ttcacaacca
3501 gttgaaatgt tctgaactta gaacttgctt tctttggctt tttgcttcct
3551 gtgagggatt cagtctcttc aactgacaga tcatcaacat cctgatcctc
3601 agacttggaa aaagctttcc ctgttatgat tggacaattt tctgcatgct
3651 cagactttgc ttttgatttg ttgcaaacac aagtatcata gcagctatgt
3701 gttattaatg aaaagttacc acagtttgaa catttcatgg ggaaatatct
3751 ccataaccag tttaatatat atagtattgg atagaagatt atcccaagga
3801 aatcatacca taaaaacatt gagtcttttg ttttgtttaa gaaccaagat
3851 actggaacaa acagaatgat tgagactaaa agatacctga gtatattgaa
3901 gtgcacacaa gcagattgct gatatctttt gcccttgtat tttaccaaac
3951 aatttctttt gttaacatct attttgggta tttctgaaac tttgtctcca
4001 cataaaagga catggtttcc atctacacta tctgatggta attccacagt
4051 tttctctcca ctgaatttta tcaagttgac atcatctgct ccaatcttct
4101 ttattgaata aaatgtttct ttgttggaac ttgtcaatgt tacgaagaaa
4151 ggattggtca agctgacttt tgttatgttg cattctccgg tcaatctaac
4201 agaataaatg ttgaccaaac ctagctgaac attaccagaa tcttgaacag
4251 gaaaggagct tgaatctatc gaattctgaa tatagtattt tgatccaact
4301 gaaagaactc tcttattcag aattgtggtg atgggtaaaa caggagcaga
4351 agtgaaaaca tgcatagatt gaggattgca agctttcaga tcttcaactt
4401 tacttgacag gcaagaaatt gtctcttctg aatcagaaat ctgataatag
4451 aaattaaagg gtgttttgcc gacaactttg caattctctg ggtttatgtt
4501 tgcacaactt aaatcaacct tggatggagg aggtgcttct cttttccctt
4551 caccatgttt aggtatcatc tgatcatcta tacctggctt ggtttgtgtt
4601 attcgatcat tcatttcagg tctccttgat gtttctatcg gttccttatt
4651 gaaagattca aaagcttcca ctctgctaga gaccaagctt ttgccaattt
4701 tcccttgttc atgagcttcc ataacttctt ttgaaagttc ttcaaaagaa
4751 gtttcttgag acacctcatg atctcctcta atagaggcat tgataaatat
4801 actcagaaaa actaggttta gaccaaataa tagcattata acaaagaaat
4851 ccttaatcct cattgattaa tgcaattata aaatcactta acctaattct
4901 gttgtggaat tgatgaataa cccttatgta tctttcttgt tgcgccgaat
4951 gctct