Sequence of DPV Unnamed Jiangsu phlebovirus

Phlebovirus JS6 segment S, complete sequence.

ACC No: HQ830171

Dated: 2011-06-01 | Length: 1744 | CRC: 588662324

                
ID   HQ830171; SV 1; linear; viral cRNA; STD; VRL; 1744 BP.
XX
AC   HQ830171;
XX
DT   01-JUN-2011 (Rel. 109, Created)
DT   01-JUN-2011 (Rel. 109, Last updated, Version 1)
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DE   Phlebovirus JS6 segment S, complete sequence.
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KW   .
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OS   Phlebovirus JS6
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Phlebovirus;
OC   unclassified Phlebovirus.
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RN   [1]
RP   1-1744
RA   Shan J., Zhao K.C., Cui L.B., Qi X., Shi Z.Y., Tang F.Y., Zhou M.H.,
RA   Jiao Y.J., Guo X.L., Wang H.;
RT   "Genetic characteristics of novel Phlebovirus related to epidemic fever
RT   with thrombocytopenia syndrome in Jiangsu, China";
RL   Unpublished.
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RN   [2]
RP   1-1744
RA   Shan J., Zhao K.C., Cui L.B., Qi X., Shi Z.Y., Tang F.Y., Zhou M.H.,
RA   Jiao Y.J., Guo X.L., Wang H.;
RT   ;
RL   Submitted (27-DEC-2010) to the INSDC.
RL   Institute of Pathogen Microbiology, Jiangsu Provincial Center for Disease,
RL   172 Jiangsu Road, Nanjing, Jiangsu 210009, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1744
FT                   /organism="Phlebovirus JS6"
FT                   /segment="S"
FT                   /host="Homo sapiens"
FT                   /strain="JS6"
FT                   /mol_type="viral cRNA"
FT                   /country="China"
FT                   /isolation_source="serum"
FT                   /collection_date="11-Oct-2010"
FT                   /db_xref="taxon:1010665"
FT   CDS             29. .910
FT                   /codon_start=1
FT                   /product="non-structural protein"
FT                   /protein_id="AEC50110.1"
FT                   /translation="MSLSKCSNVDLKSVAMNANTVRLEPSLGEYPTLRRDLVECSCSVL
FT                   TLSMVKRMGKMTNTVWLFGNPKNPLHQLEPGLEQLLDMYYKDMRCYSQRELSALRWPSG
FT                   KPSVWFLQAAHMFFSIKNSWAMETGRENWRGLFHRITKGQKYLFEGDMILDSLEAIEKR
FT                   RLRLGLPEILITGLSPILDVALLQIESLARLRGMSLNHHLFTSSSLRKPLLDCWDFFIP
FT                   IRKKKTDGSYSVLDEDDEPGVLQGYPYLMAHYLNRCPFHNLIRFDEELRTAALNTIWGR
FT                   DWPAIGDLPKEV"
FT   CDS             complement(965. .1702)
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AEC50111.1"
FT                   /translation="MSEWSRIAVEFGEQQLNLTELEDFARELAYEGLDPALIIKKLKET
FT                   GGDDWVKDTKFIIVFALTRGNKIVKASGKMSNSGSKRLMALQEKYGLVERAETRLSITP
FT                   VRVAQSLPTWTCAAAAALKEYLPVGPAVMNLKVENYPPEMMCMAFGSLIPTAGVSEATT
FT                   KTLMEAYSLWQDAFTKTINVKMRGASKTEVYNSFRDPLHAAVNSVFFPNDVRVKWLKAK
FT                   GILGPDGVPSRAAEVAAAAYRNL"
XX
SQ   Sequence 1744 BP; 436 A; 434 C; 409 G; 465 T; 0 other;

hq830171 Length: 1744  01-JUN-2011  Type: N  Check: 3193  ..

       1  acacaaagac ccccttcatt tggaaaccat gtcgctgagc aaatgctcca
      51  acgttgacct caaatctgta gcaatgaatg ctaacactgt taggcttgag
     101  ccttccctgg gagagtaccc cactcttagg agagacctcg ttgaatgctc
     151  ttgtagtgtg ttgactttgt caatggtcaa gaggatgggt aagatgacca
     201  acacagtatg gttgtttggc aaccctaaaa atcctcttca tcagcttgag
     251  cctggacttg agcagctgtt agacatgtac tacaaggaca tgaggtgcta
     301  ctcccagaga gaactgagtg ctcttaggtg gcctagtggg aagccatctg
     351  tatggttcct acaggcagct catatgttct tctccatcaa gaacagctgg
     401  gcaatggaaa ccggaagaga gaattggcgg ggcctcttcc acaggataac
     451  aaaaggccaa aagtatcttt ttgaagggga catgatattg gattctcttg
     501  aagccataga gaagcgaaga cttagacttg ggttgcctga gattctgata
     551  actggtctat ccccaattct ggatgtggct ctcctccaga tagaatcact
     601  tgcaaggcta agaggcatga gcttgaacca ccacttgttc acttcttcct
     651  cattgcgtaa gcctctgtta gactgttggg atttcttcat tcctatccgc
     701  aaaaagaaga cagatggctc atacagtgtc ttggatgagg atgatgagcc
     751  tggggtcctc cagggttacc catatctgat ggcacactat ttaaataggt
     801  gcccattcca caacctcatc aggtttgatg aagaactgag aactgcagcc
     851  ctgaacacca tttggggaag agattggcca gccattggtg acctcccgaa
     901  ggaggtctaa ttttgtcgaa ttggatcatg gaatttagcc taattggata
     951  tatcaaattg ctgcttacag gtttctgtaa gcagcagcag caacctcagc
    1001  agctctgctg ggaaccccat ctgggccaag gattcccttg gccttcagcc
    1051  acttcacccg aacatcattg ggaaagaaga cagagttcac agcagcatgg
    1101  agagggtccc tgaaggagtt gtaaacttct gtcttgctgg ctccacgcat
    1151  cttcacattg atagtcttgg tgaaggcatc ttgccacaga gagtaggcct
    1201  ccataagggt cttggttgtg gcttcagata ctcccgcagt tggaatcagg
    1251  gatccaaagg ccatgcacat catctcaggt ggataattct caaccttcag
    1301  gttcatgacg gctggcccca ctgggagata ctcctttaag gctgctgctg
    1351  ctgcacatgt ccaggtggga aggctctgcg ctaccctcac aggagtgatt
    1401  gagagcctgg tttctgccct ctcaaccagt ccatatttct cttggagtgc
    1451  catcaacctc ttagaccctg agttagacat tttccctgat gccttgacga
    1501  tcttattgcc tcgagtcagg gcaaagacaa tgatgaactt cgtatccttc
    1551  acccaatcat ctccacctgt ctccttcagc ttcttgataa tcaaagcagg
    1601  atcaaggcct tcataggcca gctctctcgc gaaatcctca agctcagtca
    1651  aattgagctg ctgctcacca aactccactg caatcctgga ccactctgac
    1701  atgatcactc ctttgcgtct ttcctttttt gggggtcttt gtgt