Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate p202/3RB segment M, complete sequence.
ACC No: HQ830185
Dated: 2011-07-17 | Length: 4824 | CRC: -242495784
ID HQ830185; SV 1; linear; genomic RNA; STD; VRL; 4824 BP.
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AC HQ830185;
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DT 17-JUL-2011 (Rel. 109, Created)
DT 17-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate p202/3RB segment M, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-4824
RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.;
RT "Genetic evidence for a role of the NSs protein of TSWV for its efficient
RT transmission by the thrips vector Frankliniella occidentalis";
RL Unpublished.
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RN [2]
RP 1-4824
RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.;
RT ;
RL Submitted (24-DEC-2010) to the INSDC.
RL Istituto di Virologia Vegetale, CNR Torino, Italy, Strada delle Cacce 73,
RL Torino, TO 10135, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .4824
FT /organism="Tomato spotted wilt virus"
FT /segment="M"
FT /host="pepper"
FT /isolate="p202/3RB"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /collection_date="1999"
FT /db_xref="taxon:11613"
FT CDS 101. .1009
FT /codon_start=1
FT /product="NSm"
FT /note="putative movement protein"
FT /protein_id="AEK06236.1"
FT /translation="MLTLFGNKRPSKSAGKDEGPLVSLAKHNGNVEVSKPWSSSDEKLA
FT LTKAMDASKGKILLNTEGTSSFGTYESDSITESEGYDLSARMIVDTNHHISNWKNDLFV
FT GNGKQNANKVIKICPTWDSRKQYMMISRIVIWVCPTIPNPTGKLVVALVDPNMPSEKQV
FT ILKGQGTITDPICFVFYLNWSIPKMNNTPENCCQLHLMCSQEYKKGVSFGSVMYSWTKE
FT FCDSPRADKDKSCMVIPLNRAIRARSQAFIEACKLIIPKGNSEKQIKKQLKELSSNLER
FT SVEEEEEGISDSVAQLSFDEI"
FT CDS complement(1333. .4740)
FT /codon_start=1
FT /product="glycoprotein precursor"
FT /note="Gn-Gc precursor"
FT /protein_id="AEK06237.1"
FT /translation="MRILKLLELVVKVSLFTIALSSVLLAFLIFRATDAKVEITRGDHP
FT EIYDDSAENEVPTAASIQREAILETLTNLMLESRTPGTRQIREEKSTIPISTEPATQKT
FT ISVLDLPNNCLNASSLKCEIKGISTYNVYYQVENNGVIYSCVSDSAEGLEKCDNSLNLP
FT KRFSKVPVIPITKLDNKRHFSVGTKFFISESLTQDNYPITYNSYPTNGTVSLQTVKLSG
FT DCKITKSNFANPYTVSITSPEKIMGYLIKKPGENVEHKVIAFSGSASITFTEEMLDGEH
FT NLLCGDKSAKIPKTNKRVRDCIIKYSKSIYKQTACINFSWIRLILIALLIYFPIRWLVN
FT KTTKPLFLWYDLMGLITYPVLLLINCLWKYFPFKCSNCGNLCIVTHECTKVCICNKSKA
FT SKEHSSECPILSKEADHDYNKHKWTSMEWFHLIVNTKLSLSLLKFVTEILIGLVILSQM
FT PMSMAQTTQCLSGCFYVPGCPFLVTSKFEKCPEKDQCYCNVKEDKIIESIFGTNIVIEG
FT PNDCIENQNCIARPSIDNLIKCRLGCEYLDLFQNKPLYNGFSDYTGSSLGLTSVGLYEA
FT KRLRNGIIDSYNRTDKISGMIAGDSLDKNETSIPENILPRQSLIFDSVVDGKYRYMIEQ
FT SLLGGGGTIFMLNDKTSETAKKFVIYIKSVGIHYEVSEKYTTAPIQSTHTDFYSTCTGN
FT CDTCRKNQALTGFQDFCITPTSYWGCEEAWCFAINEGATCGFCRNIYDMDKSYRIYSVL
FT KSTIVADVCISGILGGQCSRITEEVPYENTLFQADIQADLHNDGITIGELIAHGPDSHI
FT YSGNIANLNDPVKMFGHPQLTHDGVPIFTKKTLEGDDMSWDCAAIGKKSVTIKTCGYDT
FT YRFRSGLEQISDIPVSFKDFSSFFLEKSFSLGKLKIVVDLPSDLFKVVPKKPSITSTSL
FT NCNGCLLCGQGLSCILEFFSDLTFSTAISIDACSLSTYQLAVKKGANKYNITMFCSANP
FT DKKKMTLYPEGNPDISVEVLVNNVIIEEPENIIDQNDEYAHEEQQYNSDSSAWGFWDYI
FT KSPFNFIASYFGSFFDTIRVVLLIAFIFLVIYFCSILTSICKGYVKHKSYKSRSKIEDD
FT DELEIKAPMLMKDTMTRRRPPMDFSHLV"
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SQ Sequence 4824 BP; 1549 A; 865 C; 841 G; 1569 T; 0 other;
hq830185 Length: 4824 17-JUL-2011 Type: N Check: 5695 ..
1 agagcaatca gtgcgtcaga aatataccta ttatacactt tgctaagaat
51 caatcaacta cattacacaa gctcctctac cttaggctgt tgaactcaaa
101 atgttgactc ttttcggtaa caagaggcct tctaagtctg ccggaaagga
151 tgaaggtcct ttagtttcac ttgctaaaca taatggcaat gttgaagtct
201 caaaaccatg gtcttcttct gatgaaaagc ttgctttaac caaagccatg
251 gatgcatcca aaggaaagat actgttgaac actgagggaa catcttcctt
301 tggaacctat gaatctgatt ctatcacaga atcagagggt tatgatcttt
351 ctgctagaat gatagtagat acaaaccatc atatctcaaa ctggaaaaat
401 gatctttttg ttggcaacgg aaagcaaaat gctaataagg ttatcaagat
451 ctgtccaact tgggacagca gaaaacaata catgatgatt tccaggattg
501 tgatatgggt ctgccccact ataccaaacc ctacagggaa acttgtggtt
551 gctttagttg atcccaacat gccatctgaa aagcaagtca tcctgaaggg
601 tcaagggaca ataactgatc ctatctgctt tgttttttat ctgaactggt
651 ctattccaaa gatgaacaac accccagaaa actgttgtca gctgcatttg
701 atgtgcagcc aagaatacaa gaaaggggtt tcttttggta gtgtcatgta
751 ttcttggaca aaagagtttt gtgattcacc cagagctgat aaagacaaaa
801 gttgtatggt tatacctcta aacagggcca ttagagctag gtctcaagca
851 ttcattgaag cctgcaagct gataattcct aaaggaaaca gtgagaagca
901 gattaaaaaa cagcttaaag aattgagctc aaatcttgag agatcagttg
951 aagaagaaga ggaagggatt tctgacagtg ttgctcagtt atcctttgat
1001 gaaatatagt tttttaaaac acttatttaa gcttaaattt ctgtctattt
1051 tgcatttcga atccaaaaaa ccaaaacaaa aaacaaaaac aaaaaagaaa
1101 aaacaaacaa aaaaatctaa ccaaaaaaca aaaacaaaat aaggctgaaa
1151 agccaaactt tggtccgaag actctttttg ttgttttttg tttatttgta
1201 ttttttgttt gttgtttttt gtttatttca tatttgcttt ttattagtca
1251 atgattgatt ctaaagattt tatatatata aaatcttgct aatatagaag
1301 attgaatcaa atttaatctg tgacaagcat cctcagacaa ggtgagagaa
1351 atccataggt ggccttcgtc ttgtcattgt atctttcatt aacatagggg
1401 ctttgatctc aagttcatca tcatcctcta tcttggatct agatttataa
1451 gatttatgct ttacatatcc tttacaaatg gatgtcagaa tagaacagaa
1501 ataaatcaca aggaaaatga atgcaataag cagtaccact ctgatagtat
1551 caaaaaatga gccaaaataa cttgcaatga aattgaatgg acttttaata
1601 taatcccaaa agccccatgc agaagaatca gaattatatt gttgttcttc
1651 atgagcatac tcatcatttt gatctattat attctctggt tcttctataa
1701 taacattatt aaccaaaact tccacagata tatccggatt gccttctgga
1751 tacagtgtca ttttcttctt gtcggggttg gctgaacaaa acattgttat
1801 attgtattta ttagctcctt ttttaacagc cagctgataa gtagataaag
1851 agcaagcgtc tatagaaatt gcagtagaaa atgtcaaatc tgagaaaaat
1901 tctaaaatgc aagataaacc ttggccgcat agaagacagc cgttgcaatt
1951 taagcttgtt gaagttatgg aaggtttttt aggaacaact ttaaaaagat
2001 cagatggaag atcaactaca attttcagtt tccctaaact aaaagatttt
2051 tccaggaaaa aactagagaa atctttgaaa ctaacaggaa tatctgatat
2101 ttgctctaaa ccagatctaa acctgtatgt gtcatatcca catgttttaa
2151 tagtgactga tttttttcct attgctgcac aatcccaaga catgtcatct
2201 ccttctagag ttttcttagt aaaaataggc actccatcat gggtcaattg
2251 cggatgacca aacattttca caggatcatt caagtttgca atatttccag
2301 agtaaatatg gctgtcaggt ccatgagcta ttagttcacc tatagtgata
2351 ccatcattat gcaaatctgc ctgtatatca gcttgaaaca atgtattttc
2401 ataaggaact tcttcagtaa tccttgagca ttgacctccc aaaataccag
2451 aaatacaaac atctgctact atagttgatt tgagcactga ataaatccta
2501 tatgatttgt ccatatcata aatatttcga cagaatccgc atgtagcacc
2551 ctcattaatt gcaaaacacc aagcttcttc acatccccaa taagaagttg
2601 gtgttataca aaaatcttgg aaacctgtta aagcttgatt tttcctgcaa
2651 gtgtcgcagt ttcctgtaca agtggaataa aaatccgtat gggtgctttg
2701 gatgggagct gttgtatatt tttctgacac ttcataatga attcccacac
2751 ttttgatata aatcacaaat tttttggctg tttctgaggt cttgtcattt
2801 agcatgaata tagttcctcc tcctcccaaa agagattgtt ctatcatata
2851 tctatatttc ccgtctacaa cagaatcaaa gattaatgat tgcctgggca
2901 ggatgttctc tggtatgctt gtttcatttt tgtctaaaga gtctcctgca
2951 atcattccag aaattttgtc tgtacgatta taggaatcta ttataccatt
3001 tctcaatctc ttagcctcat acagaccaac tgatgttaac cctaaagagc
3051 ttcctgtata atccgaaaac ccattgtaca aaggtttgtt ctgaaataaa
3101 tctaggtatt cgcaacctaa tctgcatttt ataagattat caatagatgg
3151 gcgtgcaatg caattctggt tctctatgca atcattagga ccttctataa
3201 caatattagt gccaaagata ctttctatga tcttgtcttc ttttacattg
3251 cagtaacatt gatctttttc agggcatttt tcaaatttgc ttgtaaccaa
3301 aaatggacag cctggaacat aaaagcatcc actcaaacat tgggttgttt
3351 gagccataga catgggcatc tgagacaaaa tgactaaacc tatcaaaatt
3401 tcggtcacaa attttagcaa actcaagctc agcttagtgt tcactattag
3451 atggaaccat tccatgctag tccacttatg tttgttgtag tcatgatctg
3501 cctctttgga caatatagga cactctgaag aatgctcttt tgaagctttg
3551 cttttgttgc aaatgcagac tttagtacac tcatgtgtga ctatgcacaa
3601 attgccacag ttagaacatt taaatgggaa atatttccat aagcaattta
3651 tgagcaataa gacagggtat gtgatcaagc ccataagatc ataccagaga
3701 aagagaggtt tagtcgtctt gttcactaac catcggatag ggaaatagat
3751 caacaaagct atcaatatca atcttatcca agaaaaattg atgcaggctg
3801 tttgcttata aatacttttt gaatatttga ttatgcaatc tctgactctt
3851 ttgtttgttt ttggtatttt agctgatttg tcaccgcata agagattgtg
3901 ttcaccatcc aacatttcct cggtaaaagt gatacttgct gatccagaaa
3951 aagctataac cttgtgttcc acattttcac caggtttttt tatcaaataa
4001 cccatgatct tctcagggct agtgatgctc acagtatagg gatttgcaaa
4051 gtttgattta gttattttgc agtcaccaga taactttaca gtttgtaatg
4101 atactgttcc attagtgggg tatgagttgt aagttatagg ataattatct
4151 tgtgtcaggc tttctgaaat gaagaatttt gttcccactg aaaaatgtct
4201 tttgttgtca agtttggtaa taggaataac tgggactttg gagaatctct
4251 ttggtaaatt taaagaatta tcacattttt ctaaaccttc tgcagaatca
4301 gaaacacagg aatatatgac accattgttt tcaacttgat aataaacatt
4351 ataagtagat atccctttta tctcacattt taatgaggaa gcattcaagc
4401 agttgttggg aagatccaaa acagagattg ttttttgcgt tgctggctca
4451 gtggaaatag ggatggttga tttttcttct cgtatctgac gggttccagg
4501 agtccgagat tctagcatca gattagttaa agtctccaag atagcttcac
4551 gttgaatcga tgcagcagtg ggtacctcat tctcagcaga atcatcataa
4601 atctcaggat gatctccacg agttatttct actttagcat ctgtggctct
4651 gaagatcaag aatgccaaca aaacagaact cagggcaatt gtgaaaagac
4701 tcacttttac cactagttct agtagtttta gaattctcat cttagatgtc
4751 tacccagatt acaatggttg tgtgattaat ttcaagatgt ctggattaag
4801 gtttttgttt gcactgattg ctct