Sequence of DPV Tomato spotted wilt virus
Tomato spotted wilt virus isolate p202/3RB segment S, complete sequence.
ACC No: HQ830186
Dated: 2011-07-18 | Length: 2962 | CRC: 2046534544
ID HQ830186; SV 1; linear; genomic RNA; STD; VRL; 2962 BP.
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AC HQ830186;
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DT 18-JUL-2011 (Rel. 109, Created)
DT 18-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE Tomato spotted wilt virus isolate p202/3RB segment S, complete sequence.
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KW .
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OS Tomato spotted wilt virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN [1]
RP 1-2962
RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.;
RT "Genetic evidence for a role of the NSs protein of TSWV for its efficient
RT transmission by the thrips vector Frankliniella occidentalis";
RL Unpublished.
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RN [2]
RP 1-2962
RA Margaria P., Ciuffo M., Mautino G., Bosco L., Tavella L., Turina M.;
RT ;
RL Submitted (24-DEC-2010) to the INSDC.
RL Istituto di Virologia Vegetale, CNR Torino, Italy, Strada delle Cacce 73,
RL Torino, TO 10135, Italy
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FH Key Location/Qualifiers
FH
FT source 1. .2962
FT /organism="Tomato spotted wilt virus"
FT /segment="S"
FT /host="pepper"
FT /isolate="p202/3RB"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /collection_date="1999"
FT /db_xref="taxon:11613"
FT CDS 89. .1420
FT /codon_start=1
FT /product="truncated silencing suppressor"
FT /note="truncated NSs"
FT /protein_id="AEK21287.1"
FT /translation="MSSSVYESIIQTRASVWGSTASGKAVVDSYWIHELGTGSPLVQTQ
FT LYSDSRSKSSFGYTAKVGNLPCEEEEILSQHVYIPIFDDIDFSINIDDSVLALSVCSNT
FT VNTNGVKHQGHLKVLSPAQLHSIGSTMNRSDITDRFQLQEKDIIPNDRYIEAANKGSLS
FT CVKEHTYKIEMCYNQALGKVNVLSPNRNVHEWLYSFKPSFNQVESNNRTVNSLAVKSLL
FT MSAENNIMPNSQAFVKASTDSHFKLSLWLRVPKVLKQVSIQKLFKVAGDETNKIFYLSI
FT ACIPNHNSVETALNISVICKHQLPIRKCKAPFELSMMFSDLKEPYNIVHDPSYPQRIVH
FT ALLETHTSFAQVLCNNLQEDVIIYTLNNYELTPGKLDLGERTLNYSEDICKRKYFLSKT
FT LECLPSNTQTMSYLDSIQIPSWKIDFAREKLRFPHNLFQLQNLC"
FT CDS complement(2035. .2811)
FT /codon_start=1
FT /product="nucleocapsid"
FT /note="Nc"
FT /protein_id="AEK21288.1"
FT /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT NPNAKGSIAMEHYSETLNKFYEMFGVKKQAKLAELA"
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SQ Sequence 2962 BP; 936 A; 547 C; 475 G; 1004 T; 0 other;
hq830186 Length: 2962 18-JUL-2011 Type: N Check: 3085 ..
1 agagcaattg tgtcataatt ttattcttaa tcaaacctca cttagaaaat
51 cacaatactg taataagaac acagtaccaa taaccataat gtcttcaagt
101 gtttatgagt cgatcattca gacaagagct tcagtctggg gatcaactgc
151 atctggtaaa gctgttgtag attcttactg gattcatgaa cttggcactg
201 gttctccact agttcaaacc cagctgtatt ctgattcaag aagcaaaagt
251 agctttggct atactgcaaa ggtagggaat cttccctgtg aagaagaaga
301 gattctttct cagcatgtgt atatccctat ttttgatgat attgatttta
351 gcattaatat tgatgactct gttctggcac tatctgtttg ctcaaataca
401 gtcaatacta atggagtgaa acatcaaggt catttgaaag ttttgtctcc
451 tgctcagctc cactctattg gatctaccat gaacagatct gatattacag
501 accgattcca gcttcaagaa aaagacataa ttcccaatga cagatacatc
551 gaagctgcaa acaaaggctc tttgtcttgt gtcaaagagc atacctataa
601 gatcgagatg tgctataatc aagctttggg caaagtgaat gttttatccc
651 ctaacaggaa tgttcatgaa tggctgtaca gtttcaagcc aagtttcaat
701 caagttgaaa gcaacaacag aactgtaaat tctcttgcag tgaaatctct
751 gctcatgtca gcagaaaaca acatcatgcc taactctcag gcttttgtca
801 aagcttccac tgattctcat ttcaaactga gcctctggct aagggtccca
851 aaggttctga agcaggtctc tattcagaaa ttgttcaaag ttgcaggaga
901 cgaaacaaat aaaatatttt atttatctat tgcttgcatt ccaaaccata
951 acagtgttga gacagcttta aacatttctg ttatttgcaa gcatcagctc
1001 ccaattcgta aatgtaaagc tccttttgaa ttatcaatga tgttttctga
1051 tttaaaggag ccttacaaca ttgttcatga tccttcatat cctcagagga
1101 ttgttcatgc tctgcttgaa actcacacat cttttgcaca agttctttgc
1151 aacaacttac aagaagatgt gatcatctac actttgaaca actatgagct
1201 aactcctgga aagttagatt taggtgaaag aaccttaaat tacagtgaag
1251 atatctgcaa aaggaaatat ttcctttcaa aaacacttga atgtcttcca
1301 tctaacacac aaactatgtc ttacttggac agcatccaaa tcccttcctg
1351 gaagatagac tttgccaggg agaaattaag atttccccac aacctgtttc
1401 agttgcaaaa tctttgttaa agcttgattt aagcgggatc gaaaagaaag
1451 aatctaagat tccggaaaca tatgcttcag gatcaaaata atcttgctgt
1501 gtccggtttt tctaattatg ttatgtttat tttctttctt tacttataat
1551 tatttctctg ttttgtcatt tcttttaagt tcctcctgtt taatagaaac
1601 cataaaacaa aaaataaaat aaaaataaaa ttaaaaatga aacaaaaatc
1651 aaaaatgaaa caaaaataaa aaataaaaaa tgaaataaaa acaacaaaaa
1701 aattaaaaaa caaaaaccca aaaaagatcc cgaatgggac aatcttggcc
1751 aaatttgggt tttgttttgt ttttgttttt tgttttttgt ttttattttt
1801 attttattta tttattttat tttatttttg ttttttattt tttattttgt
1851 tttttatttt atgttttttc ttgtttttgt tattttgttt atttattaag
1901 cataacacac agaaagcaaa ctttaattaa acacacttat tttaaattta
1951 acacactaag caagcacaag caataaagat aaagaaagct ttatatattt
2001 gtagactttt ccataattta acttacagct gatttcaagc aagttctgcg
2051 agttttgcct gttttttaac cccgaacatt tcatagaact tgttaagagt
2101 ttcactgtaa tgttccatag caatacttcc tttagcatta ggattgctgg
2151 agctgagtat agcagcatac tcttttcctt tcttcacctg atcttcattc
2201 atttcaaatg ctttgctttt cagcacagtg caaacttttc ctaaggcttc
2251 tctggtgtca tacttctttg ggtcaatccc gaggtctttg tattttgcat
2301 cctgatatat agccaagaca acactgatca tctcaaagct atcaactgaa
2351 gcaataagag gtaagctacc tcccagcatt atggcaagcc tcacagactt
2401 tgcatcatca agaggtaatc cataggcttg aatcaaaggg tgggaagcaa
2451 tcttagattt gatagtattg agattctcag aattcccagt ttcctctaca
2501 agcctgaccc tgatcaagct atcaagcctt ctgaaggtca tgtcagtggc
2551 tccaatcctg tctgaagttt tctttatggt aattttacca aaagtaaaat
2601 cactttgttt aataaccttc attatactct gacgattctt caggaatgtc
2651 agacatgaaa taacgctcat cttcttgatc tggtcgaggt tttccagaca
2701 aaaagtcttg aagttgaatg ctaccagatt ctgatcttcc tcaaactcaa
2751 ggtctttgcc ttgtgtcaac aaagcaacaa tgctttcctt agtgagctta
2801 accttagaca tgatgattgt agaagttgtt atatgctttg accgtatgta
2851 attcaaggtg cgaaagtgca actctgtatt ccgcagtcgt ttcttagggt
2901 tttaatgtga tgatttgtaa gactgagtgt taaggtttga ataaaattga
2951 cacaattgct ct