Sequence of DPV Jeju virus

Jeju virus strain 10-11 nucleocapsid protein gene, complete cds.

ACC No: HQ834695

Dated: 2012-03-22 | Length: 1754 | CRC: 1736740735

                
ID   HQ834695; SV 1; linear; viral cRNA; STD; VRL; 1754 BP.
XX
AC   HQ834695;
XX
DT   22-MAR-2012 (Rel. 112, Created)
DT   22-MAR-2012 (Rel. 112, Last updated, Version 1)
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DE   Jeju virus strain 10-11 nucleocapsid protein gene, complete cds.
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KW   .
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OS   Jeju virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC   unclassified Hantavirus.
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RN   [1]
RP   1-1754
RX   PUBMED; 22230701.
RA   Arai S., Gu S.H., Baek L.J., Tabara K., Bennett S.N., Oh H.S., Takada N.,
RA   Kang H.J., Tanaka-Taya K., Morikawa S., Okabe N., Yanagihara R., Song J.W.;
RT   "Divergent ancestral lineages of newfound hantaviruses harbored by
RT   phylogenetically related crocidurine shrew species in Korea";
RL   Virology 424(2):99-105(2012).
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RN   [2]
RP   1-1754
RA   Gu S.H., Baek L.J., Yanagihara R., Song J.-W.;
RT   ;
RL   Submitted (28-DEC-2010) to the INSDC.
RL   Department of Microbiology, College of Medicine, Korea University, 5-ga,
RL   Anam-dong, Sungbuk-gu, Seoul 136-705, Korea
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1754
FT                   /organism="Jeju virus"
FT                   /segment="S"
FT                   /host="Crocidura shantungensis"
FT                   /strain="10-11"
FT                   /mol_type="viral cRNA"
FT                   /country="South Korea"
FT                   /isolation_source="lung tissue"
FT                   /collection_date="29-Apr-2010"
FT                   /db_xref="taxon:990280"
FT   CDS             37. .1323
FT                   /codon_start=1
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AEX56231.1"
FT                   /translation="MATIEELQKDLALQEGQLTITKQKLKDAQEQYEKDPDDINKASVL
FT                   QRQMDAKMTEDRVNQLKQMIADRLKAGAQSAAAQEPTGMESDDHLSQKSMLRYGNTMDL
FT                   NMIDLEEPSGQTANWLALITYVIGFVDTILLKGLYMFTTRGRETIKDNKGTRIKLKDDS
FT                   SYVEVGSIRKPKHLYISLPSTQSSIKADELTPGRFRTLVCGLYPAKVKQRCMISPVMGV
FT                   IGFNYLAKDWDERIEDFMTQRCPFIQVVTQAAMAPQNANLDFMKERQDNLNKMRTPESQ
FT                   AIEQMIQGTQCTVIDSIESPSAVWVFAGAPDRCPPNCLFIAGMAELGAFFSILQDMRNT
FT                   IIASKTVGTAEEKLKKKSSFYQSYLRRTQSMGIQLDQRIIILFMYEWGKEMVDHFHLGD
FT                   DMDPELRNTAQVLIDQKVKEISNQEPLKI"
XX
SQ   Sequence 1754 BP; 614 A; 300 C; 335 G; 505 T; 0 other;

hq834695 Length: 1754  22-MAR-2012  Type: N  Check: 4242  ..

       1  tagtagtaga ctcccaaaag agctaataca gaaaccatgg caacaattga
      51  ggaattacaa aaggacttgg cacttcaaga aggccaattg acaataacta
     101  aacaaaaact caaagatgcc caagaacaat atgaaaagga tccagatgat
     151  ataaacaagg caagcgttct acagagacaa atggatgcaa agatgacaga
     201  agatagggtc aaccagttaa aacaaatgat agctgataga ctcaaagcag
     251  gtgcccagtc tgcagcagca caagagccaa caggaatgga gtctgatgat
     301  cacctatccc aaaaatcaat gctcagatac gggaacacta tggacttgaa
     351  tatgattgac cttgaggaac ctagtggaca gactgcaaat tggcttgcct
     401  tgatcactta tgtcattggc tttgtagata caatcttgct aaaaggtctc
     451  tatatgttta caactagggg ccgtgaaaca ataaaggata ataaaggtac
     501  acggattaaa ttgaaagatg attcatccta tgtggaagtt ggttctatca
     551  gaaagccgaa acatctttat atctcattac ctagtaccca gtcatccata
     601  aaagctgatg aactaacacc aggcagattt cggactttag tatgtggact
     651  ttatccagct aaagtaaaac agagatgtat gattagtcct gtcatgggag
     701  ttatagggtt taattaccta gctaaagatt gggatgagag aatagaagac
     751  tttatgacac agcgttgccc ttttattcag gtagtaaccc aagcagccat
     801  ggctcctcaa aatgcaaatt tagattttat gaaggaaagg caagataatc
     851  ttaacaaaat gagaactcct gagtcacagg ctattgaaca aatgatccaa
     901  gggacacaat gtactgtcat tgatagtata gagtcccctt ctgcagtttg
     951  ggtctttgca ggtgctccag atcgttgccc accaaattgt ctttttattg
    1001  cagggatggc tgagttgggt gccttcttct caatcctaca agacatgcgt
    1051  aatacaatca tagcctcaaa aactgttggg acagcagagg aaaagctaaa
    1101  gaaaaaatca tccttttatc aatcatactt gaggagaaca caatcaatgg
    1151  gtattcagct tgatcaaagg attattattt tatttatgta tgagtggggc
    1201  aaagagatgg tggaccactt ccatctgggt gatgatatgg atcctgagct
    1251  tagaaacaca gctcaggttc ttattgacca gaaagttaaa gaaatttcca
    1301  atcaagaacc actaaaaatc taattcaata taactgctga tatactttaa
    1351  gtttaagatg gtggtgggca tatatatact tagatattat acatagtagt
    1401  agctagtaag tatagtagaa cagaatgtat atattagtag gtaagtacta
    1451  tactgtatat cttgtaggtt attattaaat ggtaagtcaa tggtaagtta
    1501  atggtaagtt tataaagatt atatgtgata aaaaatgttg aagtcaataa
    1551  gtctaaatat tacatgctat taagcaacta ttaatttata aatttattaa
    1601  tttatcatga ttgtgcaatt taaatctata ccatttaatt atggcttaat
    1651  tcttagattc aatgaatcta tatctacctc aacccccttc ccccttacaa
    1701  ctacctacct catcatattt tctccttttt tgctttattg ggagtctact
    1751  acta