Sequence of DPV Jeju virus
Jeju virus strain 10-11 RNA-dependent RNA polymerase gene, complete cds.
ACC No: HQ834697
Dated: 2012-03-22 | Length: 6588 | CRC: 1328658670
ID HQ834697; SV 1; linear; viral cRNA; STD; VRL; 6588 BP.
XX
AC HQ834697;
XX
DT 22-MAR-2012 (Rel. 112, Created)
DT 22-MAR-2012 (Rel. 112, Last updated, Version 1)
XX
DE Jeju virus strain 10-11 RNA-dependent RNA polymerase gene, complete cds.
XX
KW .
XX
OS Jeju virus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus;
OC unclassified Hantavirus.
XX
RN [1]
RP 1-6588
RX PUBMED; 22230701.
RA Arai S., Gu S.H., Baek L.J., Tabara K., Bennett S.N., Oh H.S., Takada N.,
RA Kang H.J., Tanaka-Taya K., Morikawa S., Okabe N., Yanagihara R., Song J.W.;
RT "Divergent ancestral lineages of newfound hantaviruses harbored by
RT phylogenetically related crocidurine shrew species in Korea";
RL Virology 424(2):99-105(2012).
XX
RN [2]
RP 1-6588
RA Gu S.H., Baek L.J., Yanagihara R., Song J.-W.;
RT ;
RL Submitted (28-DEC-2010) to the INSDC.
RL Department of Microbiology, College of Medicine, Korea University, 5-ga,
RL Anam-dong, Sungbuk-gu, Seoul 136-705, Korea
XX
FH Key Location/Qualifiers
FH
FT source 1. .6588
FT /organism="Jeju virus"
FT /segment="L"
FT /host="Crocidura shantungensis"
FT /strain="10-11"
FT /mol_type="viral cRNA"
FT /country="South Korea"
FT /isolation_source="lung tissue"
FT /collection_date="29-Apr-2010"
FT /db_xref="taxon:990280"
FT CDS 36. .6509
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="AEX56233.1"
FT /translation="MEKYREIHEKLKERAVGTMTAVECIDYLDRLYAVRHDLVDQMIKH
FT DWSDNKDSEEPISKVLVVAGVPGNVINWVEKKIIPDDPSGKTLKSFFKMTPDNYKIQGF
FT SIEFVEVTVSADVDRAIKEKYNKYEAGLKYTELQLQYAYQKGEIPQPYQIKFSVVAVKT
FT DGSNISTQWPSRRNDGVVQYMRMVQAEIGYVREHLIKPEERSQLEAMFNLKFHIGLDTN
FT QVFYIPSYPGIASVKPRLGELVEYCKNWMKVRHDFAFHEVTGKAVMKEFEKGELRHATN
FT YKLSNHPRNFLLIQCALNRSYQPATITSDQLDTRTACHEILKFQPETPTVAIVLDMAYK
FT YLNFDRDDLVAYYSNQSSFEQTDIVKQPGTFKLTSSQLRGMSKIMLERLGKHEKEVNHG
FT SLLESLEIKSQLVQDECVTNITKILSNLELNIEEPITFSRNTAKHTYVDTLLEKFLSNE
FT LQRYLIDIIKKTTAWHLGQLIRDITESLIAHSGLKRSKYWSIHAYNHGNVLLCILPSKS
FT LESAGSYIRFITVFRLGPGLVDPGNLDSILEGDEGTWAVSKIMSLDLNRLLALNIAFEK
FT ALIATATWFHYYTEDQSHFPLQHAVRSVFSYHLLLSVCQKMKVCALFDNLRYLIPSVTA
FT LYSGFPSLIENFFKRPFKTALEVYVYSIAKSLLVSLAQNNKSRFFSRVKLLGLTIDQST
FT VGASGVYPSLISKVIYKHYQSLISEVTTCFFLFEKGLHGNVNEEAKIHLETVEWAQKFR
FT HLEETYGAHMVDHGYTIRDLYEIPNLVQQQMYCQDVTELAASELNQVLQSKSAIVANSI
FT INKHWDKPYFSQTRNISLKGMSGCLQEDGHLSSSVTLIEAIRYLQHSRVNPTLIQLYEE
FT TRDQKAQARIVRKYQRTENDRGFFITTLATRCRLEIIEDYYDAIAKNVAEEYISYGGEK
FT KIINIQGALEKALRWAAGESSIQLSTGEVLKLKRKLMYVSADATKWSPGDNSAKFQRFT
FT SILHNGLHDNKLRNCVIDALRHIYKTDFFVSRKLKNYINNMETLDDNVREFLNFFPNGQ
FT CGEVKGNWLQGNLNKCSSLFAVALSLLFKKVWKELFPELDCFFEFAHHSDDGLFIYGYL
FT EPMGDGTDWYLYVTQQIQAGNHHWYGVNTEMWKCMFNLHEHILLMGSIKVSPKKTTVSP
FT TNAEFLSTFFEGCAVSIPYIKILIGSLSELPGLGYFDDIAAAQARCVKALDMGATPQIA
FT QLAIGLCTSKVERLYGTALGMINHPGSYLAVKHQDTPIPLGGSGTMSIMELATSGIGMS
FT DKNLLKRALQGFQHKRRKADKYVLGLFKFLMKLSEETFNHERLGEFSFIGKVQWKIFTP
FT KSEFEFFDMFSRAFMDEWTKQHPTYDYIIPRSRDNLIVYLVRKLNDPSIITAMTMQSPL
FT QLRFRMQAKQHMKVCKMNEEWVTFREVLSAADSFATSYEPSASDIDLFQTLVSCTFSKE
FT YAWKDFLNNVEIEVIPTKQVRKPKVARVFTVREKDQMIQNNLPSVIGYKFAISAEEIND
FT VIKSSRFPDSLASDLVTMKDGVYRELGLDIGKPEVMKRVAPLLYKSSKSRVVIVQGNVE
FT GTAESICNYWLRTMSLVKTIKVTPHKEVLKAVSIFNRKEDIGQHKDLAALRLCIEVWRW
FT SKANNAPINDWFNALWFEDKTFSEWIDRFIRVGVPLVDPEIQCAALMIADIRGNMALLQ
FT TQANRRAYSGKQYDAYCTQTYNEETKLYEGDLRVTFNFGVDCARLEIFWEKQAYILETS
FT ITQKHVLKVMMEEVTKELLRCGMRFNTEQVNGTKALVLFKTESGFEWGKPNIPCIVYKH
FT CQLRTSLRTQQTVNHKFQISIRDNGLKAIAQHDEDSPRFLLAHAFHTIRDVRYQGIDAV
FT GNIWFEHKNIKLYLNPIINSGLFENFMKSLPAVIPPAAYSLIMKRAKVSVDLFMFNDLL
FT KLINPKNTLNLDGIVMTPEGLSTLSSLSSKQMSEAVTGSDSDDYEDEDTDSDEDYTISL
FT DDINFDQIDFHSDIEHFLQDETTYTTDLLITSEETVVKKMRGIIRILEPVHLIRSWVSR
FT GLLIEKVYNKVNIILIARYLSKTFEFNRIPVINLDPYDLTELEGIVKGWGEQVIDDFEN
FT LDQEARNLVETKGIIPEDVLPDSLFSFRHTLVLLRRLFPPDTISSFY"
XX
SQ Sequence 6588 BP; 2245 A; 1021 C; 1321 G; 2001 T; 0 other;
hq834697 Length: 6588 22-MAR-2012 Type: N Check: 4756 ..
1 tagtagtaga ctccaggaaa gaaaaatcag aaaacatgga aaagtataga
51 gaaatacatg aaaagctaaa agagagggca gtgggtacta tgactgcagt
101 agaatgtatt gattatttag atagacttta tgcagtaagg catgatcttg
151 ttgatcaaat gataaagcat gattggtcag ataataagga tagtgaagaa
201 ccaatttcaa aagttcttgt tgttgcaggg gtccctggta atgttataaa
251 ttgggtggaa aaaaagatca tccctgatga cccatcggga aagaccttga
301 aatcattctt taagatgact ccggacaatt acaaaattca aggtttctct
351 attgaatttg tggaagttac agttagtgca gatgttgaca gggctataaa
401 ggagaagtat aataaatatg aagctgggtt aaagtataca gaacttcagc
451 ttcaatatgc ctaccaaaag ggtgaaatac cacaaccata tcaaattaag
501 tttagtgttg ttgctgtgaa aacagatggg tctaatatat ccacacagtg
551 gcctagtaga cgaaatgatg gtgtagttca atatatgagg atggtgcaag
601 ctgagattgg atatgtccga gaacatttaa tcaagccaga agagcgtagt
651 cagttagagg caatgttcaa tttaaaattt catatcggcc tagatacaaa
701 tcaggttttt tacatcccaa gctacccagg aatagcatca gttaagccaa
751 gattaggaga gttggtagag tattgtaaga actggatgaa agttagacat
801 gattttgcat ttcacgaggt cactggtaaa gcagttatga aagaatttga
851 aaaaggagaa ttgagacacg caacaaacta taagttatca aaccatcctc
901 ggaattttct tctaattcaa tgtgctttaa acagatcata ccaaccagca
951 acaataacaa gtgatcagct tgatactaga acagcttgtc atgagatttt
1001 aaaattccag ccagagacac cgactgttgc tattgtttta gatatggcat
1051 ataaatattt aaattttgat agggatgatc tggttgctta ttactccaat
1101 cagagttctt ttgaacaaac agatattgtt aagcaaccag gaacatttaa
1151 attaacatca tcacaactga gaggcatgtc aaaaataatg ctggaacgtt
1201 taggaaagca tgagaaagag gtgaatcatg gatctctatt agagagtctt
1251 gagataaaga gtcaactagt tcaggatgaa tgtgtaacta atatcacaaa
1301 gattttatcc aacttagaat taaatattga ggaacctata acatttagtc
1351 gtaatactgc aaaacatact tatgtagata cactattaga gaagtttcta
1401 agtaatgagc tgcaacgata tttaatagat attattaaaa aaaccacagc
1451 atggcatcta ggacaattaa tcagagacat tacagagagc ttgattgcac
1501 attcaggttt gaagcgctca aagtattggt ccatccatgc atataatcat
1551 gggaatgtct tattgtgtat cttaccgtct aagtcattag agtctgctgg
1601 ttcatatatt cggtttataa cagtatttag gcttggtcca ggtctggttg
1651 atcctggaaa tcttgatagt atcctggaag gggatgaagg cacttgggca
1701 gtatcaaaaa ttatgagctt agatcttaac agattattag cactcaatat
1751 agcctttgaa aaggctttga tagcaactgc aacatggttt cattattata
1801 cagaagatca atcccacttt cccctacaac atgctgttag atctgtattt
1851 tcttatcact tattactttc tgtctgccag aaaatgaaag tatgtgcttt
1901 atttgacaat cttcgttatc taattccatc agtaacagcc ttgtattcag
1951 gattcccatc tttaatagag aatttcttta agagaccctt caagactgca
2001 ttagaagtat atgtctatag cattgcaaaa tccctactgg tgtctctggc
2051 acaaaacaat aaatctcgat tcttttctag ggtgaaactt ctaggcctga
2101 ctatagatca atcaactgtt ggtgcaagcg gggtgtatcc gtcattgatt
2151 agtaaagtta tatacaagca ttaccaaagc ctgatctcag aagttacaac
2201 ctgcttcttt ttatttgaaa aaggattgca tggtaatgtt aatgaagaag
2251 caaaaattca cctggagact gtagaatggg ctcaaaagtt taggcattta
2301 gaggaaacat atggagcaca tatggtagac catggttaca ctattagaga
2351 cctatatgaa attccaaatc tagttcagca acaaatgtat tgtcaagatg
2401 taactgaatt agctgctagt gaactaaatc aggttcttca atcaaagagt
2451 gctattgttg ctaattcaat aattaataaa cattgggata agccatattt
2501 cagtcaaaca cgcaacatca gcctaaaagg gatgtctggt tgtctccaag
2551 aagatggaca cttatcatca tccgttactc tgatagaagc aataaggtac
2601 ttacagcact caagagttaa cccaacattg atccagctct atgaggaaac
2651 acgtgatcag aaagcacaag ctagaattgt taggaaatac caaagaacag
2701 agaatgatag aggtttcttt attacaactc tagcaacaag gtgtaggcta
2751 gaaattattg aagattatta tgatgctata gctaaaaatg ttgcagagga
2801 atatatatca tacggtggtg aaaagaagat tatcaatata caaggagcac
2851 tagagaaagc attgaggtgg gctgcaggag agagttctat tcaactatca
2901 acaggtgagg tgcttaagct aaaacggaaa ttgatgtatg ttagtgctga
2951 tgctacaaaa tggtctccag gtgacaattc tgctaaattt caaaggttca
3001 caagcatttt gcataatggc ttacatgata acaaattgcg caactgtgtt
3051 atagatgcac tacgtcatat ttacaaaact gatttttttg tgtcacggaa
3101 attaaaaaac tacataaata acatggagac tcttgatgac aatgttagag
3151 aattcttaaa tttctttcct aatggacaat gtggagaagt caaagggaat
3201 tggctgcagg gtaatctgaa caagtgttct tcattatttg cagttgcctt
3251 atctctcttg ttcaagaaag tatggaaaga attgtttcct gaacttgatt
3301 gcttctttga atttgcacat cattctgatg atggattatt tatttatggt
3351 tacttggagc caatgggtga tggaaccgat tggtatttat atgtgactca
3401 acagatccaa gccggtaatc atcattggta tggtgttaac actgaaatgt
3451 ggaaatgcat gtttaattta catgaacata tcttattaat gggttcaata
3501 aaggtgtcac ccaaaaagac aacggtctca cctacaaatg cagagttttt
3551 atcaactttt tttgaaggtt gtgcagtatc aataccatat atcaagattc
3601 tgataggttc actctctgaa cttccaggat taggttattt tgatgacatt
3651 gctgctgctc aagcacgatg tgttaaggct ctggatatgg gggctacacc
3701 acagatagct caattagcta ttggattgtg tacaagtaaa gtagagcggc
3751 tctatgggac agcacttggg atgattaatc atccaggatc ttatttggct
3801 gttaaacacc aggacacacc aattccctta ggtggtagtg ggacaatgtc
3851 tatcatggaa ttggcaacct ctggaatagg tatgtctgat aaaaatttgc
3901 tcaaaagagc actgcaaggg tttcagcata aacgaagaaa agcggacaaa
3951 tatgtattag gtctttttaa attcttaatg aaattaagtg aagaaacgtt
4001 caatcatgag cgattagggg aattttcttt tatcggtaaa gtacaatgga
4051 aaatatttac tcctaagagt gaatttgaat tttttgatat gttttctaga
4101 gcatttatgg atgaatggac aaagcaacac cctacatatg attacataat
4151 accacgatca agagacaatt taattgtcta tttagttaga aagttaaatg
4201 atcctagcat aattacagct atgactatgc agtctcctct gcaactacgg
4251 tttcgaatgc aagctaaaca gcatatgaag gtgtgtaaga tgaatgaaga
4301 atgggtgact tttagggagg tacttagtgc tgcagacagt tttgcaacaa
4351 gttatgagcc atcagcaagt gatatagatc tatttcagac tctagtttca
4401 tgtacctttt caaaagaata tgcatggaaa gactttttaa ataatgtgga
4451 gatagaagtc attccaacta agcaagttag gaaacctaaa gtagctaggg
4501 tgttcacagt ccgggaaaaa gatcaaatga ttcaaaataa tctcccatct
4551 gtcataggtt ataagtttgc aatttccgca gaagaaatta acgatgtaat
4601 taagtcaagt agattcccag attcgttagc atcagattta gtaactatga
4651 aagatggtgt atatcgagag cttggcttgg atataggtaa gcctgaagta
4701 atgaaacgtg tggcacctct tctatataaa agttcaaaat ctcgtgttgt
4751 tattgttcaa ggaaatgttg aaggtactgc tgagtctatc tgtaattatt
4801 ggctaagaac aatgtctttg gttaaaacta ttaaagttac tccccataaa
4851 gaagtactaa aggctgtttc tatatttaat aggaaagaag atataggaca
4901 gcataaagat cttgcagcat taaggctctg tatagaggtt tggaggtggt
4951 caaaagcaaa taatgctcca attaatgact ggtttaatgc attatggttt
5001 gaggataaaa ctttttcaga atggattgat aggtttatta gggtaggggt
5051 ccctttagtt gacccagaaa ttcaatgtgc agcattaatg attgctgata
5101 ttcgtggaaa tatggcatta ttacaaactc aggcgaatcg aagagcttat
5151 tcagggaaac aatatgatgc atattgtacc caaacatata atgaagaaac
5201 aaaattatac gaaggtgacc tgcgggtgac ctttaatttt ggagttgatt
5251 gtgcaaggct agaaatcttc tgggagaagc aagcttatat tcttgaaaca
5301 tctatcacac agaagcatgt tttaaaggtg atgatggaag aagtgacaaa
5351 agagctatta aggtgcggga tgagattcaa tacagagcaa gtaaatggaa
5401 ctaaagcttt agttctcttt aaaactgagt ctggctttga atggggaaaa
5451 cctaatatac catgcatagt atataaacat tgtcagctta gaacttcttt
5501 aaggacacaa caaactgtta atcataagtt tcagatctct attagagata
5551 atggcctgaa ggctatagca caacatgatg aggatagtcc tcgatttctc
5601 ttagcacatg cttttcacac aataagagat gttcggtacc aaggaattga
5651 tgcagtaggt aacatctggt ttgaacataa gaatattaag ctttatttaa
5701 atccgataat taattctgga ttatttgaaa atttcatgaa aagcttgcca
5751 gcagttatac cccctgctgc ttattcccta ataatgaaac gggcaaaggt
5801 ctcagtggat ctatttatgt ttaatgatct gttaaagcta ataaatccaa
5851 aaaatacact aaatttagat ggaattgtaa tgactcctga aggattaagt
5901 acactcagta gtttatcctc taagcaaatg tcagaagctg tcactggtag
5951 tgatagtgat gattatgaag atgaggatac agatagtgat gaagattata
6001 caataagttt ggatgatata aattttgatc aaatagattt tcactcagat
6051 attgaacact ttctacaaga tgaaacaact tacactactg atttattaat
6101 aacaagtgaa gaaactgttg tgaagaagat gagaggtatt attagaatct
6151 tagagcctgt tcatttaatc cgtagctggg tctctagagg attgctaatt
6201 gaaaaagtgt ataataaagt aaatattata cttatagctc gctatctttc
6251 caaaacattt gaattcaata ggatacctgt aataaatctt gacccatatg
6301 accttacaga gctagaaggg attgttaagg gctggggtga acaagtaatt
6351 gatgatttcg aaaatctaga tcaagaagct cggaatcttg ttgaaactaa
6401 aggaatcata cctgaagatg tgttgccaga ttctttgttt tcatttagac
6451 acactttagt cctactaaga cgattatttc caccagacac catctcatca
6501 ttctattgaa gatctacatc ctcttttaaa tcttatcttt tcacatgttc
6551 ttcttttctt ttgtttcatt tcctggagcc gactacta