Sequence of DPV Umatilla virus
Umatilla virus isolate USA1969/01 segment 5, complete sequence.
ACC No: HQ842623
Dated: 2011-11-20 | Length: 2021 | CRC: -1853089449
ID HQ842623; SV 1; linear; genomic RNA; STD; VRL; 2021 BP.
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AC HQ842623;
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DT 20-NOV-2011 (Rel. 110, Created)
DT 20-NOV-2011 (Rel. 110, Last updated, Version 1)
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DE Umatilla virus isolate USA1969/01 segment 5, complete sequence.
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KW .
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OS Umatilla virus
OC Viruses; dsRNA viruses; Reoviridae; Sedoreovirinae; Orbivirus.
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RN [1]
RC Publication Status: Online-Only
RP 1-2021
RX PUBMED; 21897849.
RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.;
RT "Umatilla virus genome sequencing and phylogenetic analysis: identification
RT of stretch lagoon orbivirus as a new member of the Umatilla virus species";
RL PLoS One 6(8):E23605-E23605(2011).
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RN [2]
RP 1-2021
RA Belaganahalli M.N., Maan S., Maan N.S., Tesh R., Attoui H., Mertens P.P.C.;
RT ;
RL Submitted (29-DEC-2010) to the INSDC.
RL Arbovirus Molecular Research Group, Vector Borne Disease Programme,
RL Institute for Animal Health, Pirbright Laboratory, Ash Road, Pirbright,
RL Woking, Surrey GU24 0NF, United Kingdom
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CC GenBank Accession Numbers HQ842619-HQ842628 represent sequences
CC from the 10 segments of Umatilla virus.
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FH Key Location/Qualifiers
FH
FT source 1. .2021
FT /organism="Umatilla virus"
FT /segment="5"
FT /host="bird"
FT /isolate="USA1969/01"
FT /serotype="1"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /isolation_source="pool of Culex pipiens mosquitoes"
FT /collected_by="John Lazuick, Arbovirus Disease Section, Ft.
FT Collins, USA"
FT /collection_date="Jul-1969"
FT /db_xref="taxon:40060"
FT CDS 15. .1961
FT /codon_start=1
FT /product="VP4"
FT /note="Cap; viral guanylyltransferase and
FT methyltransferase; viral capping enzyme"
FT /protein_id="AEE98372.1"
FT /translation="MSHAVIHLSKSLEHLASKLFLPTWKIEGDKTVNELWIENGRYFTD
FT VYAIGRLHALTIRQARGHSIIFVVYGDDSTRLKDAIAPRDIHIPKGSLDLRGPEVHKML
FT ERIIGAKRVRLRAEFGNVLRKYAFKNCITFHGSEIETVTKSDPRKHKVYGLPELCPMIT
FT RFGVMDNEIYQSDAACDEKLVSMLDYAIYSCDVVYYVGCGDLRTLRIFQKRDPQRFSRV
FT KWVCIDPIAPNYGSSNVKVYPCVFKEPKDLLKFKQTGKEHMLIWDVRSDKGDASPWEWE
FT DICREQDALGEETARKNKSWLHMAIVKRRIPQYQEQLTLYGSCVLPQPGAPQNMYELRN
FT VIIHHDAPSHIDRKHLQEAQLFYVNVKKAREMVAKFHGLDRGRKLKRSIIETLHIMRDN
FT GLTSQHQEKRCDLFYLTNKRNEDYQMQISQILRESEIATLWVGDTKPYGYDDFKMDRRS
FT LMLRYSAEDRLVIDGNGFMLLLMWQGEIDARAIRYDPFWAEQFCVIVKYTDFERNLPDI
FT SLCRFIGLRAESSLMRIRSDHLHERTDLVKRLGLDVSGHLYVTLVSGRYCVDLLWWFRM
FT IMEWSSMNAKDKLQRMREKNVEVIEWKDDKVDEPWHVREDLIAALRHAKEMANLSSMDV
FT HRWIVYLHGFALK"
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SQ Sequence 2021 BP; 667 A; 302 C; 507 G; 545 T; 0 other;
hq842623 Length: 2021 20-NOV-2011 Type: N Check: 4947 ..
1 gttttagatg aacgatgtca catgcagtaa tacacttatc taagagtttg
51 gaacatctag cgagcaaatt gtttttaccg acatggaaaa tcgaaggaga
101 taaaacagtc aatgaattat ggatcgaaaa tggacgttac tttactgatg
151 tttatgctat tggaagacta cacgcgttaa ccatacgaca ggcaagagga
201 catagtatta tctttgtagt atatggagat gattctactc gattaaagga
251 tgcgattgca ccgcgggaca tacatatacc gaaaggaagt ttagatttac
301 gaggtcctga ggtacataaa atgctagaac ggataatagg tgcgaagcga
351 gtgcgactta gggcggaatt tggaaatgtg ttaagaaagt acgcttttaa
401 gaactgcata acatttcatg gaagtgaaat tgagacggtg acaaaatcag
451 atccgcgaaa gcataaagtg tatggtttac ccgaattatg tccaatgata
501 actagatttg gtgtaatgga taatgaaatc taccaaagtg atgccgcctg
551 tgatgaaaaa ttggtatcga tgttagatta tgcaatatat tcatgcgatg
601 tggtttatta cgtcgggtgt ggagatctac gaacgctacg gattttccaa
651 aaacgcgatc ctcaaaggtt ctcaagagtt aagtgggtat gtatcgatcc
701 tatcgcacct aactatggaa gttcaaacgt aaaagtatac ccatgtgttt
751 tcaaagagcc aaaagatctg ctaaagttca aacaaacggg taaagaacat
801 atgttaattt gggatgtgag aagtgacaag ggtgatgcgt ctccgtggga
851 atgggaggat atctgccgag agcaagatgc actgggagaa gaaacagcta
901 ggaaaaataa aagttggcta catatggcga ttgtgaaaag acgaattccg
951 caatatcaag agcagcttac attgtacggt agctgtgtgc tgccgcaacc
1001 gggtgcacca cagaatatgt atgagttgag aaatgtaata atacatcatg
1051 atgcgccgag tcatatagat aggaaacatt tacaagaagc tcaacttttt
1101 tacgtgaatg tgaagaaagc acgagaaatg gtggctaagt ttcacggcct
1151 tgatagaggg agaaaattga agagatcgat aattgaaacg ttacatataa
1201 tgagagacaa tggtctgaca agtcagcatc aggagaaacg atgtgattta
1251 ttctatctta cgaataagcg gaacgaagat tatcaaatgc agattagcca
1301 gatattacgt gaatccgaga tagcaacatt atgggtggga gatactaagc
1351 catatggtta tgatgatttc aaaatggatc gtcgaagcct gatgctacgc
1401 tattcagctg aagatagatt ggttatcgac ggaaatggat tcatgttact
1451 attaatgtgg caaggtgaga tagatgcgcg agcgattaga tatgatccgt
1501 tttgggcgga acaattttgc gtgattgtta agtatactga ctttgaacga
1551 aatttaccag atatatcatt gtgtagattt ataggactaa gagccgaatc
1601 atctttaatg agaatacgat cagaccatct acatgaacga acagatctgg
1651 taaaaagatt gggtttagat gtttcaggcc atttatatgt aacattagta
1701 tcaggtcgtt attgtgtgga tctgttgtgg tggttccgaa tgattatgga
1751 gtggtcttca atgaatgcaa aggataaact ccaaaggatg cgagagaaga
1801 atgttgaagt aatagaatgg aaagatgata aggtagatga gccatggcat
1851 gttagagaag atttgattgc cgcattacga catgcgaagg agatggctaa
1901 cctaagctca atggatgtcc accgatggat agtgtatctg catgggttcg
1951 ctttgaaata aagcggactt gcctcgggtc gtcgtgctca ctttggggag
2001 tgtcatcgtt cacaaggata c