Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate Hubei1 coat protein gene, partial cds.

ACC No: HQ844086

Dated: 2013-02-27 | Length: 945 | CRC: 1562501760

                
ID   HQ844086; SV 1; linear; genomic RNA; STD; VRL; 945 BP.
XX
AC   HQ844086;
XX
DT   07-JUN-2011 (Rel. 109, Created)
DT   27-FEB-2013 (Rel. 115, Last updated, Version 4)
XX
DE   Sweet potato feathery mottle virus isolate Hubei1 coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-945
RX   PUBMED; 23053527.
RA   Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang Y.;
RT   "Molecular variability of sweet potato chlorotic stunt virus (SPCSV) and
RT   five potyviruses infecting sweet potato in China";
RL   Arch. Virol. 158(2):491-495(2013).
XX
RN   [2]
RP   1-945
RA   Qin Y.H., Zhang Z.C., Qiao Q., Zhang D.S., Tian Y.T., Wang Y.J.;
RT   ;
RL   Submitted (29-DEC-2010) to the INSDC.
RL   Institute of Plant Protection, Henan Academy of Agricultural Sciences, 1
RL   Nongye Road, Zhengzhou, Henan 450002, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .945
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /host="Ipomoea batatas"
FT                   /isolate="Hubei1"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2009"
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .>945
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:F8TCE1"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:F8TCE1"
FT                   /protein_id="AEG79922.1"
FT                   /translation="SNEKTEFKDAGADPPAPKPKDIPPPPTITEITDPEDPKQAALKAA
FT                   RAKQPAVIPESYGRDTSKERESIVGTSSKGMRDKDVNVGTVGTFVVPRVKMNANKKRQP
FT                   MVNGRAIINFQHLSTYEPEQFEVANTRSTQEQFQAWYEGVKGDYGVDDTGMGILLNGLM
FT                   VWCIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRN
FT                   RTKAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHLQMKAAALKNARNRLFG
FT                   LDGNVSTQEEDTERHTTTDVTRNIHNLLGMRGVQ"
XX
SQ   Sequence 945 BP; 310 A; 185 C; 235 G; 215 T; 0 other;

hq844086 Length: 945  27-FEB-2013  Type: N  Check: 8420  ..

       1  tctaatgaga aaactgaatt taaagatgca ggtgcggacc ctccagctcc
      51  taagcctaaa gatattcctc caccacccac aataactgaa atcactgatc
     101  cagaggaccc aaagcaggca gctttgaaag ctgcacgagc aaagcaaccc
     151  gcagtcattc cagaatcgta tggacgagac acgagcaaag agagggagtc
     201  aatagtgggg acatcatcaa agggtatgag ggataaagat gtgaatgttg
     251  gcaccgttgg tacatttgtt gtgccacgtg tcaagatgaa tgcaaacaag
     301  aaaaggcaac caatggtcaa tggaagggcc attataaatt tccagcactt
     351  gtcaacatat gaaccagagc agtttgaagt tgcaaacacc cggtcgactc
     401  aagaacagtt ccaagcatgg tatgaaggag tcaaagggga ttatggtgtt
     451  gacgacacag gaatggggat cttattgaat ggactaatgg tttggtgcat
     501  tgaaaatggc acatccccaa atataaatgg tgtgtggaca atgatggatg
     551  gtgatgagca agtgacatat ccaattaaac cattgttgga tcatgcagtg
     601  cctactttta ggcagattat gacgcacttc agtgacgttg ctgaagccta
     651  tatagaaatg cgaaaccgta caaaggcgta catgccgaga tatggtctac
     701  aacgcaattt gactgatatg agtcttgcgc gatatgcatt tgatttttac
     751  gagctgcatt caactacacc tgcacgtgct aaagaagcac atttacagat
     801  gaaggcagcc gcacttaaga atgcgcgaaa tcggttgttt ggtttggacg
     851  gaaacgtctc cacgcaagaa gaagatacgg agaggcacac gacaactgat
     901  gttactagaa atatacataa cctcttagga atgaggggtg tgcaa