Sequence of DPV Sweet potato feathery mottle virus

Sweet potato feathery mottle virus isolate Shanxi5 coat protein gene, partial cds.

ACC No: HQ844120

Dated: 2013-02-27 | Length: 939 | CRC: -1664307343

                
ID   HQ844120; SV 1; linear; genomic RNA; STD; VRL; 939 BP.
XX
AC   HQ844120;
XX
DT   07-JUN-2011 (Rel. 109, Created)
DT   27-FEB-2013 (Rel. 115, Last updated, Version 4)
XX
DE   Sweet potato feathery mottle virus isolate Shanxi5 coat protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Sweet potato feathery mottle virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-939
RX   PUBMED; 23053527.
RA   Qin Y., Zhang Z., Qiao Q., Zhang D., Tian Y., Wang Y.;
RT   "Molecular variability of sweet potato chlorotic stunt virus (SPCSV) and
RT   five potyviruses infecting sweet potato in China";
RL   Arch. Virol. 158(2):491-495(2013).
XX
RN   [2]
RP   1-939
RA   Qin Y.H., Zhang Z.C., Qiao Q., Zhang D.S., Tian Y.T., Wang Y.J.;
RT   ;
RL   Submitted (29-DEC-2010) to the INSDC.
RL   Institute of Plant Protection, Henan Academy of Agricultural Sciences, 1
RL   Nongye Road, Zhengzhou, Henan 450002, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .939
FT                   /organism="Sweet potato feathery mottle virus"
FT                   /host="Ipomoea batatas"
FT                   /isolate="Shanxi5"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Aug-2009"
FT                   /db_xref="taxon:12844"
FT   CDS             <1. .>939
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /db_xref="GOA:F8TCH4"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:F8TCH4"
FT                   /protein_id="AEG79955.1"
FT                   /translation="SNENTEFKDAGANPPAPKPKGPYTAPEITEVTEPEDPKQAALREA
FT                   RQKQPAVISEPYGRDTSEKPMRSVSPQRVKDKDVNVGTTGTFVVPRVKLHTSKMRQPRV
FT                   NGISVVNLQHLATYEPEQHNIGNTRSTQEQFRAWYEGVKGDYGVDDAGMAILLNGLMVW
FT                   CIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRT
FT                   KAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPARAKEAHMQMKAAALKNAHNRLFGLD
FT                   GNVSTQEEDTERHTATDVTRNIHNLLGMRGVQ"
XX
SQ   Sequence 939 BP; 307 A; 192 C; 228 G; 212 T; 0 other;

hq844120 Length: 939  27-FEB-2013  Type: N  Check: 7399  ..

       1  tctaatgaga atactgaatt taaagatgcg ggtgcaaacc caccagcacc
      51  aaaaccaaaa gggccatata cagcaccaga aatcacagag gttactgagc
     101  cggaggatcc caaacaagct gcgcttcgtg aagctagaca gaaacaacct
     151  gctgtcatat ccgaaccata cggtagagac acaagtgaga aacctatgcg
     201  ctctgtttca ccacaaaggg tgaaagacaa ggatgtcaac gttggcacga
     251  caggcacatt tgtggtgcca cgagttaagc tccatactag caaaatgcgg
     301  caacctagag tcaacggaat ctctgtagta aacttacaac acctcgcaac
     351  ttatgaacct gaacaacata acattgggaa tacacgctca actcaggaac
     401  agtttcgagc atggtatgaa ggtgttaagg gtgattatgg tgttgatgat
     451  gctggaatgg caatcttgtt gaacggattg atggtatggt gcatagagaa
     501  tggaacatct ccaaatataa atggcgtttg gacgatgatg gatggggatg
     551  aacaggtgac gtaccccata aagccattac tggatcatgc agtgcctact
     601  tttaggcaaa tcatgacaca cttcagtgac gttgctgaag cgtatataga
     651  aatgagaaat cgcaccaagg catatatgcc taggtatgga ttacaacgta
     701  acttgactga tatgagtctt gcgcgatatg catttgattt ctatgagctg
     751  cactcaacaa cacctgcacg tgctaaagaa gcacacatgc agatgaaagc
     801  agctgcactt aagaatgcgc ataatcggtt gtttggtttg gatggaaacg
     851  tctccacgca agaagaggat acggagaggc acactgcgac tgatgttact
     901  agaaatatac ataacctctt aggaatgagg ggtgtgcaa