Sequence of DPV Potato virus S

Potato virus S isolate KHO.FA.2 coat protein (CP) gene, complete cds; and 11K protein (11K) gene, partial cds.

ACC No: HQ856834

Dated: 2011-08-18 | Length: 1163 | CRC: -494034694

                
ID   HQ856834; SV 1; linear; genomic RNA; STD; VRL; 1163 BP.
XX
AC   HQ856834;
XX
DT   21-JUN-2011 (Rel. 109, Created)
DT   18-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Potato virus S isolate KHO.FA.2 coat protein (CP) gene, complete cds; and
DE   11K protein (11K) gene, partial cds.
XX
KW   .
XX
OS   Potato virus S
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
XX
RN   [1]
RP   1-1163
RX   PUBMED; 21567245.
RA   Salari K., Massumi H., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   "Analysis of Iranian Potato virus S isolates";
RL   Virus Genes 43:281-288(2011).
XX
RN   [2]
RP   1-1163
RA   Massumi H., Salari K., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   ;
RL   Submitted (08-JAN-2011) to the INSDC.
RL   Dept. of Plant Pathology, Shahid Bahonar University of Kerman, Kerman
RL   7616914111, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1163
FT                   /organism="Potato virus S"
FT                   /host="Solanum tuberosum"
FT                   /isolate="KHO.FA.2"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /collection_date="1997"
FT                   /db_xref="taxon:12169"
FT   gene            1. .885
FT                   /gene="CP"
FT   CDS             1. .885
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AEI17865.1"
FT                   /translation="MPPKPDPTSSGETPQAPPLVPPPRNVEEHRVGPSQGHGQNEEAML
FT                   EQRLIRLIELMASKRHNSTLSNISFEIGRPSLEPTPEMRRNPENPYSRFSIDELFKMEI
FT                   RSVSNNMANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSFVYLDPAGTVEFP
FT                   TGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFD
FT                   TFDYVTNGAAIQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLANTNVEYAGGMLG
FT                   AEIVRNHRNAINQ"
FT   gene            882. .>1163
FT                   /gene="11K"
FT   CDS             882. .>1163
FT                   /codon_start=1
FT                   /gene="11K"
FT                   /product="11K protein"
FT                   /protein_id="AEI17866.1"
FT                   /translation="MKADRLVMLLLCVRQLGYALPVEVCVNIISLSAGPVSGGRSTYAR
FT                   KRRARSIGRCWRCYRVYPPICNSKCDNRTCRPGISQNYKVVTFIRGWSN"
XX
SQ   Sequence 1163 BP; 310 A; 269 C; 317 G; 267 T; 0 other;

hq856834 Length: 1163  18-AUG-2011  Type: N  Check: 7919  ..

       1  atgccgccca aaccggatcc gacaagctca ggagagacac cacaagcacc
      51  gccgcttgtg ccgccgcccc ggaatgtaga ggagcataga gttggcccaa
     101  gtcaagggca cgggcagaat gaagaggcta tgctggagca gaggctcatc
     151  aggttgattg aactcatggc ctcaaaaagg cacaattcaa cattgagcaa
     201  catctctttt gagataggta ggccctcact tgagccgacc cctgaaatgc
     251  ggaggaatcc ggagaacccg tactcgcggt tttcaatcga tgagctgttc
     301  aagatggaaa tccgatctgt gtccaacaac atggcgaaca ccgagcaaat
     351  ggcacaaatc actgctgaca tcgctggact tggggtcccc actgaacacg
     401  ttgcaggtgt catactgaaa gtggtgatca tgtgtgcaag cgtgagtagc
     451  tttgtttatc tagatccagc aggaactgtg gagttcccaa caggcgcagt
     501  gcccttggac tcgatcattg caatcatgaa gaatcgcgcg ggattgagaa
     551  aagtgtgcag gctgtatgct ccagtcgtgt ggaattacat gctagtccag
     601  aataggccac cttcggattg gcaggccatg ggatttcagt ggaacgcacg
     651  cttcgccgca tttgacacat tcgattatgt gactaatggg gctgcaatcc
     701  aacccgtaga ggggctcata cgcaggccca cacctgagga aacaatagct
     751  cacaatgccc acaagagtat ggcaattgac aagtcgaaca gaaatgagcg
     801  attggccaac actaatgttg agtacgctgg agggatgctt ggcgctgaga
     851  ttgtgcgcaa tcaccgcaat gcgatcaacc aatgaaggca gaccgtttag
     901  tcatgttatt attgtgtgtt cgtcaactgg gatatgcttt gccagttgaa
     951  gtttgtgtga atataataag cctaagcgca ggtccggttt ccgggggtcg
    1001  ttccacttac gctcgtaagc ggagggcccg cagcattggg cgatgctggc
    1051  gatgttatcg tgtctatcca cctatttgta attctaagtg tgataataga
    1101  acatgccgtc caggcattag tcaaaattat aaagtagtga ctttcattag
    1151  gggttggagt aac