Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 354-OYDV2 polyprotein gene, partial cds.

ACC No: HQ873779

Dated: 2011-10-14 | Length: 730 | CRC: 50777235

                
ID   HQ873779; SV 1; linear; genomic RNA; STD; VRL; 730 BP.
XX
AC   HQ873779;
XX
DT   14-OCT-2011 (Rel. 110, Created)
DT   14-OCT-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Onion yellow dwarf virus isolate 354-OYDV2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-730
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   aerial and underground reproductive tissues from different geographic
RT   regions";
RL   Unpublished.
XX
RN   [2]
RP   1-730
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   ;
RL   Submitted (12-JAN-2011) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, Riverside, CA 92521, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .730
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic) cv. Rosso di Sulmona"
FT                   /isolate="354-OYDV2"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>730
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /protein_id="AEP81367.1"
FT                   /translation="AGEGEDAAAQSSTSKQVTKQKDKDVDTGTTGKFEIPRIKVLSDKM
FT                   RFPKVGKNVVLNAEHLLAYKPDQIELYNTRSTKQQFENWYNAIKKEYDVNDEQMKILLN
FT                   GLMVWCIENGTSPNLSGNWTMMDGDEQVEYPLAPIVDNAKPTFRQIMAHFSDAAEAYIE
FT                   YRNATEKYMPRYGLQRNLTELSLARYAFDFYEMTSKTPKRAKEAHMQMKAAAVRGATNR
FT                   LFGLDGNVNTTEEDTERHTAA"
XX
SQ   Sequence 730 BP; 264 A; 131 C; 174 G; 161 T; 0 other;

hq873779 Length: 730  14-OCT-2011  Type: N  Check: 2806  ..

       1  gcgggggaag gagaagatgc agctgcacaa tcaagcacgt caaaacaagt
      51  tacaaagcaa aaggataaag atgttgacac tggcactacc ggtaagtttg
     101  aaatcccgag aataaaagtg ttgtctgata aaatgagatt tccaaaggtt
     151  ggcaaaaacg ttgtactcaa tgcagaacat ttgttggcgt ataaaccaga
     201  tcaaattgaa ctatacaaca caaggtcgac aaagcagcaa tttgagaatt
     251  ggtataatgc tataaagaag gagtacgacg tcaatgatga acaaatgaag
     301  attttactga atggtttaat ggtttggtgc attgagaatg gaacatcccc
     351  aaatttatca ggaaattgga ctatgatgga tggtgacgaa caagtcgagt
     401  atccattagc accaatcgtt gataatgcaa aaccaacatt caggcaaata
     451  atggcgcatt tcagtgatgc agctgaggca tacattgaat acaggaacgc
     501  cacggaaaaa tacatgcccc ggtatggact tcagcgcaat ttaacagaac
     551  ttagtttagc acgttacgca ttcgattttt acgaaatgac ttcaaagact
     601  cccaagcgag cgaaagaagc acacatgcaa atgaaggcgg ctgcggttag
     651  aggggcaact aatcgtttgt ttggcctgga tggtaacgta aacacaacag
     701  aagaggacac ggaaagacac acagctgcgg