Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 342-OYDV5 polyprotein gene, partial cds.

ACC No: HQ873790

Dated: 2011-10-14 | Length: 730 | CRC: -2034368578

                
ID   HQ873790; SV 1; linear; genomic RNA; STD; VRL; 730 BP.
XX
AC   HQ873790;
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DT   14-OCT-2011 (Rel. 110, Created)
DT   14-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE   Onion yellow dwarf virus isolate 342-OYDV5 polyprotein gene, partial cds.
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KW   .
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OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-730
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   aerial and underground reproductive tissues from different geographic
RT   regions";
RL   Unpublished.
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RN   [2]
RP   1-730
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   ;
RL   Submitted (12-JAN-2011) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .730
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic)"
FT                   /isolate="342-OYDV5"
FT                   /mol_type="genomic RNA"
FT                   /country="Argentina"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>730
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /protein_id="AEP81376.1"
FT                   /translation="AGEGEDAAAQSSTSRQVTKQKDKDVDTGTTGKFTVPRIKALSDKM
FT                   RFPKVGKTVVLNAEHLLAYTPDQIELYNTRATRSQFENWYNAVKKEYDVDDEQMKILLN
FT                   GLMVWCIENGTSPNLSGNWTMMDGEEQVEYPLAPVLDNAKPTFRRIMAHFSDAAEAYIE
FT                   YRNATEKYMPRYGLQRNITELSLARYAFDFYEMTSKTPKRAKEAHMQMKAAAIRGATNR
FT                   LFGLDGNVNTTEEDTERHTAA"
XX
SQ   Sequence 730 BP; 259 A; 144 C; 175 G; 152 T; 0 other;

hq873790 Length: 730  14-OCT-2011  Type: N  Check: 933  ..

       1  gcgggggaag gagaagatgc agcagcacaa tcaagcactt cgaggcaagt
      51  tacaaagcag aaagacaagg acgttgacac tggcacaacc ggtaaattca
     101  cagtgcctag aatcaaggct ttatccgaca agatgaggtt tccaaaagtt
     151  ggcaaaactg tcgtactcaa tgcagaacac ttgttagctt atacaccaga
     201  tcaaattgaa ctgtacaaca caagagcaac gagaagtcaa tttgaaaact
     251  ggtataatgc agtaaagaaa gagtacgacg tcgatgatga gcaaatgaaa
     301  attttactaa atggtttgat ggtttggtgc attgagaatg gaacatcacc
     351  caatctatca ggaaactgga ccatgatgga tggcgaagag caggttgagt
     401  atccgctagc accagttctc gataacgcaa aaccaacctt cagacgaata
     451  atggcacatt tcagtgatgc agctgaagca tacattgaat atagaaacgc
     501  cacagaaaaa tacatgcccc ggtatggact tcagcgcaat ataacagaac
     551  ttagtttggc acgttacgca ttcgattttt acgagatgac ttctaagact
     601  cctaaacgag cgaaagaagc acatatgcaa atgaaggcgg ctgcgattag
     651  aggggcaact aatcgtttgt ttggcctgga tggtaacgta aacacaacgg
     701  aagaggacac ggaaagacac acagctgcgg