Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate 201-OYDV1 polyprotein gene, partial cds.

ACC No: HQ873799

Dated: 2011-10-14 | Length: 730 | CRC: -1008924616

                
ID   HQ873799; SV 1; linear; genomic RNA; STD; VRL; 730 BP.
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AC   HQ873799;
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DT   14-OCT-2011 (Rel. 110, Created)
DT   14-OCT-2011 (Rel. 110, Last updated, Version 1)
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DE   Onion yellow dwarf virus isolate 201-OYDV1 polyprotein gene, partial cds.
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KW   .
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OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-730
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   "Characterization of viruses associated with garlic plants propagated from
RT   aerial and underground reproductive tissues from different geographic
RT   regions";
RL   Unpublished.
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RN   [2]
RP   1-730
RA   Afunian M., Parrano L., Pagliaccia D., Douhan G., Vidalakis G.;
RT   ;
RL   Submitted (12-JAN-2011) to the INSDC.
RL   Department of Plant Pathology and Microbiology, University of California,
RL   Riverside, Riverside, CA 92521, USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .730
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="Allium sativum (garlic) cv. Bianco Piacentino"
FT                   /isolate="201-OYDV1"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .>730
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein"
FT                   /protein_id="AEP81385.1"
FT                   /translation="AGEGEDAAAQSSTLKQIAKQKDKDVDTGTTGKFTIPRIKALSDKM
FT                   RFPKVGKTVVLNAEHLLEYKPDQIELYNTRSTKNQFENWYNAVKKEYDVNDEQMKILLN
FT                   GLMVWCIENGTSPNLSGNWTMMDDEEQVEYPLAPVLDNAKPTFRQIMAHFSDAAEAYIE
FT                   YRNATEKYMPRYGLQRNLTELSLARYAFDFYEMTSKTPKRAKEAHMQMKAAAIRGATNR
FT                   LFGLDGNVNTTEEDTERHTAA"
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SQ   Sequence 730 BP; 268 A; 127 C; 168 G; 167 T; 0 other;

hq873799 Length: 730  14-OCT-2011  Type: N  Check: 6752  ..

       1  gcgggggaag gagaagatgc agcagcacaa tcaagcacac taaagcaaat
      51  tgcaaagcag aaagataaag atgttgacac tggtacaact ggtaagttca
     101  caatccctag aattaaagct ctatcagata aaatgaggtt tccaaaagtt
     151  ggcaaaactg ttgtacttaa tgcagagcac ttgttggaat acaagccaga
     201  tcaaatcgaa ctgtacaaca caagatcaac aaagaatcag tttgagaatt
     251  ggtataatgc ggttaagaaa gagtacgatg tcaatgatga gcaaatgaaa
     301  atattactaa atggtctaat ggtttggtgt attgaaaatg gaacatctcc
     351  taatttatcg ggaaactgga ctatgatgga tgatgaagag caggttgaat
     401  atccattggc gccagttctg gataacgcaa aaccaacctt tagacaaata
     451  atggcacatt tcagtgatgc agctgaagca tacattgaat atagaaatgc
     501  cacagaaaaa tacatgcccc ggtatggact tcagcgcaat ttaacagaac
     551  ttagtttggc acgttacgca ttcgattttt atgagatgac ttctaaaact
     601  cctaaacgag caaaagaagc acatatgcag atgaaggcgg ctgcgattag
     651  aggggcaact aatcgcttgt ttggcctgga tggtaacgta aacacaacgg
     701  aagaggacac ggaaagacac acagctgcgg