Sequence of DPV Potato virus S

Potato virus S isolate KER.JI.4 coat protein (CP) gene, complete cds; and 11K protein (11K) gene, partial cds.

ACC No: HQ875136

Dated: 2011-08-18 | Length: 1163 | CRC: -2088320292

                
ID   HQ875136; SV 1; linear; genomic RNA; STD; VRL; 1163 BP.
XX
AC   HQ875136;
XX
DT   21-JUN-2011 (Rel. 109, Created)
DT   18-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Potato virus S isolate KER.JI.4 coat protein (CP) gene, complete cds; and
DE   11K protein (11K) gene, partial cds.
XX
KW   .
XX
OS   Potato virus S
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
XX
RN   [1]
RP   1-1163
RX   PUBMED; 21567245.
RA   Salari K., Massumi H., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   "Analysis of Iranian Potato virus S isolates";
RL   Virus Genes 43:281-288(2011).
XX
RN   [2]
RP   1-1163
RA   Massumi H., Salari K., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   ;
RL   Submitted (11-JAN-2011) to the INSDC.
RL   Dept. of Plant Pathology, Shahid Bahonar University of Kerman, Kerman
RL   7616914111, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1163
FT                   /organism="Potato virus S"
FT                   /host="Solanum tuberosum"
FT                   /isolate="KER.JI.4"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /collection_date="2005"
FT                   /db_xref="taxon:12169"
FT   gene            1. .885
FT                   /gene="CP"
FT   CDS             1. .885
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AEI17875.1"
FT                   /translation="MPPKPDPTSSGETPQALPLVPPPRNVEEHRVGPIQGHGQNEEAML
FT                   EQRLIRLIELMASKRHNSTLSNISFEIGRPSLEPTPEMRRNPENPYSRFSIDELFKMEI
FT                   RSVSNNMANTEQMAQITADIAGLGVPTEHVAGVILKVVIMCASVSSSVYLDPAGTVEFP
FT                   TGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFD
FT                   TFDYVTNGAAIQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLANTNVEYTGGMLG
FT                   AEIVRNHRNAINQ"
FT   gene            882. .>1163
FT                   /gene="11K"
FT   CDS             882. .>1163
FT                   /codon_start=1
FT                   /gene="11K"
FT                   /product="11K protein"
FT                   /protein_id="AEI17876.1"
FT                   /translation="MKADRLAMLLLCVYRLGYILPVEVCVNIISLSAGPVSGGRSTYAR
FT                   KRRARSIGRCWRCYRVYPPICNSKCDNRTCRPGISQNYKVVTFIRGWSN"
XX
SQ   Sequence 1163 BP; 308 A; 268 C; 315 G; 272 T; 0 other;

hq875136 Length: 1163  18-AUG-2011  Type: N  Check: 9877  ..

       1  atgccgccca aaccggatcc gacaagctca ggagagacac cacaagcgct
      51  gccgcttgtg ccgccgcccc ggaatgtaga ggagcataga gttggcccaa
     101  ttcaagggca cgggcagaat gaagaggcta tgctggagca gaggctcatc
     151  aggttgattg aactcatggc ctcaaaaagg cacaattcaa cattgagcaa
     201  catctctttt gagataggta ggccctcact tgagccgacc cctgaaatgc
     251  ggaggaatcc ggagaacccg tactcgcggt tttcaatcga tgagctgttc
     301  aagatggaaa tccgatctgt gtccaacaac atggcgaaca ccgagcaaat
     351  ggcacaaatc actgctgaca tcgctggact tggggtcccc actgaacacg
     401  ttgcaggtgt catactgaaa gtggtgatca tgtgtgcaag cgtgagtagc
     451  tctgtttatc tagatccagc agggactgtg gagttcccaa caggcgcagt
     501  gcccttggac tcgatcattg caatcatgaa gaatcgcgcg ggattgagaa
     551  aagtgtgcag gctgtatgct ccagtcgtgt ggaattacat gctagtccag
     601  aataggccac cttcggattg gcaggccatg ggatttcagt ggaacgcacg
     651  cttcgccgca tttgacacat tcgattatgt gactaatggg gctgcaatcc
     701  aacccgtaga ggggctcata cgcaggccca cacctgagga aacaatagct
     751  cacaatgccc acaagagtat ggcaattgac aagtcgaaca gaaatgagcg
     801  cttggccaac actaatgttg agtacactgg agggatgctt ggcgctgaga
     851  ttgtgcgcaa tcaccgtaat gcgatcaacc aatgaaggca gaccgtttag
     901  ctatgttgtt attgtgtgtc tatcgactgg gatatatttt gccagttgaa
     951  gtttgtgtaa atataataag cctaagcgca ggtccagttt ctgggggtcg
    1001  ttccacttac gctcgtaagc ggagggcccg cagcattggg cgttgctggc
    1051  gatgttatcg tgtctatcca cctatttgta attctaagtg tgataataga
    1101  acatgccgtc caggcattag tcaaaattat aaagtagtga ctttcattcg
    1151  gggttggagt aac