Sequence of DPV Potato virus S

Potato virus S isolate KER.LA.12 coat protein (CP) gene, complete cds; and 11K protein (11K) gene, partial cds.

ACC No: HQ875138

Dated: 2011-08-18 | Length: 1163 | CRC: 1680623530

                
ID   HQ875138; SV 1; linear; genomic RNA; STD; VRL; 1163 BP.
XX
AC   HQ875138;
XX
DT   21-JUN-2011 (Rel. 109, Created)
DT   18-AUG-2011 (Rel. 109, Last updated, Version 2)
XX
DE   Potato virus S isolate KER.LA.12 coat protein (CP) gene, complete cds; and
DE   11K protein (11K) gene, partial cds.
XX
KW   .
XX
OS   Potato virus S
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Tymovirales;
OC   Betaflexiviridae; Carlavirus.
XX
RN   [1]
RP   1-1163
RX   PUBMED; 21567245.
RA   Salari K., Massumi H., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   "Analysis of Iranian Potato virus S isolates";
RL   Virus Genes 43:281-288(2011).
XX
RN   [2]
RP   1-1163
RA   Massumi H., Salari K., Heydarnejad J., Hosseini Pour A., Varsani A.;
RT   ;
RL   Submitted (11-JAN-2011) to the INSDC.
RL   Dept. of Plant Pathology, Shahid Bahonar University of Kerman, Kerman
RL   7616914111, Iran
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1163
FT                   /organism="Potato virus S"
FT                   /host="Solanum tuberosum"
FT                   /isolate="KER.LA.12"
FT                   /mol_type="genomic RNA"
FT                   /country="Iran"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:12169"
FT   gene            1. .885
FT                   /gene="CP"
FT   CDS             1. .885
FT                   /codon_start=1
FT                   /gene="CP"
FT                   /product="coat protein"
FT                   /protein_id="AEI17879.1"
FT                   /translation="MPPKPDPTSSGETPQVLPPVPPPRNVEEHRVGPSQGHGQNEEAML
FT                   EQRLIRLIELMASKRHNSTLSNISFEIGWPSLETTGEMGRNPENPYSGFSMDELSKMEI
FT                   RSVSSNMANTEQMAQITADIAGFGVPSEHVAGVILKVVIMCASVSSSVYLDPAGTVEFP
FT                   TGAVPLDSIIAIMKNRAGLRKVCRLYAPVVWNYMLVQNRPPSDWQAMGFQWNARFAAFD
FT                   TFDYVTNGAAVQPVEGLIRRPTPEETIAHNAHKSMAIDKSNRNERLANTNVEYTGGMLG
FT                   AEIVRNHRNAINQ"
FT   gene            882. .>1163
FT                   /gene="11K"
FT   CDS             882. .>1163
FT                   /codon_start=1
FT                   /gene="11K"
FT                   /product="11K protein"
FT                   /protein_id="AEI17880.1"
FT                   /translation="MKADRLAMLLLCVHQLGYALPVEVCVNIISLSAGPVSGGRSTYAR
FT                   KRRARSIGRCWRCYRVYPPICNSKCDNRTCRPGISQNYKVVTFIRGWSN"
XX
SQ   Sequence 1163 BP; 311 A; 258 C; 323 G; 271 T; 0 other;

hq875138 Length: 1163  18-AUG-2011  Type: N  Check: 600  ..

       1  atgccgccca aaccagatcc gacaagctca ggagagacac cacaagtgct
      51  gccgcctgtg ccgccgcccc ggaatgtaga ggagcataga gttggcccaa
     101  gtcaagggca cgggcagaat gaagaggcta tgctggagca gaggctcatc
     151  aggttgattg aactcatggc ctcaaaaagg cacaattcaa ccttgagcaa
     201  catctctttt gagataggtt ggccgtcact tgaaacgact ggtgaaatgg
     251  ggaggaatcc ggagaaccct tactcggggt tttcaatgga tgagctgtca
     301  aagatggaaa tccgatctgt gtccagcaac atggcgaaca cggagcaaat
     351  ggcacaaatc actgctgaca tcgctggatt tggggtcccc agtgaacacg
     401  ttgcaggtgt catactgaaa gtggtgatca tgtgtgcaag cgtgagtagc
     451  tctgtttatc tagatccagc agggactgtg gagttcccaa caggcgcagt
     501  gcccttggac tcgatcattg caatcatgaa gaatcgagcg ggattgagaa
     551  aagtgtgcag gctgtatgct ccagtcgtgt ggaattacat gctagtccag
     601  aataggccac cttcggattg gcaggccatg ggatttcagt ggaacgcacg
     651  cttcgccgca tttgacacat tcgattatgt gactaatggg gctgcagtcc
     701  aacccgtaga ggggctcata cgcaggccca cacctgagga aacaatagct
     751  cacaatgccc acaagagtat ggcaattgac aagtcgaaca gaaatgagcg
     801  attggccaac actaatgttg agtacactgg agggatgctt ggcgctgaaa
     851  ttgtgcgcaa tcaccgcaat gcgatcaacc aatgaaggca gaccgtttag
     901  ccatgttatt attgtgtgtt catcaactgg gatatgcttt gccagttgaa
     951  gtttgtgtga atataataag cctcagtgca ggtccggttt ctgggggtcg
    1001  ttccacttac gctcgtaagc ggagggcccg cagcattggg cgatgctggc
    1051  gatgttatcg tgtctatcca cctatttgta attctaagtg tgataataga
    1101  acatgccgtc caggcattag tcaaaattat aaagtagtga ctttcattag
    1151  gggttggagt aac