Sequence of DPV Capsicum chlorosis virus

Capsicum chlorosis virus isolate CaCV-avio nucleocapsid protein (N) gene, complete cds.

ACC No: HQ897931

Dated: 2011-07-17 | Length: 828 | CRC: 212825815

                
ID   HQ897931; SV 1; linear; viral cRNA; STD; VRL; 828 BP.
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AC   HQ897931;
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DT   06-JUL-2011 (Rel. 109, Created)
DT   17-JUL-2011 (Rel. 109, Last updated, Version 2)
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DE   Capsicum chlorosis virus isolate CaCV-avio nucleocapsid protein (N) gene,
DE   complete cds.
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KW   .
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OS   Capsicum chlorosis virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
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RN   [1]
RP   1-828
RA   Liu Y., Wu Z.Y., Rao X.Q.;
RT   "Morphology Symptomatology and Nucleocapsid Gene Analysis of Capsicum
RT   chlorosis virus";
RL   Unpublished.
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RN   [2]
RP   1-828
RA   Liu Y., Wu Z.Y., Rao X.Q.;
RT   ;
RL   Submitted (18-JAN-2011) to the INSDC.
RL   South China Agricultural University, Laboratory of Plant Virology, Plant
RL   Pathology, Tianhe District, Wushan Road, Guangzhou, Guangdong 510642, China
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FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /organism="Capsicum chlorosis virus"
FT                   /segment="S RNA"
FT                   /host="African violet"
FT                   /isolate="CaCV-avio"
FT                   /mol_type="viral cRNA"
FT                   /country="China:Guangzhou"
FT                   /collection_date="Sep-2009"
FT                   /db_xref="taxon:163325"
FT   gene            1. .828
FT                   /gene="N"
FT   CDS             1. .828
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AEJ36207.1"
FT                   /translation="MSNVRQLTEKKIRELLAGGTADVEIETDDSTPGFNFKTFYDNNKG
FT                   VEMTFTNCLNILKCRKQIFAACKSGKYKFCEKTIVSTAAEVGPDDWTFKRTEALIRVKM
FT                   VNMVEKSKNEAARQEMYAQVMELPLVAAYGLNVPTSYDYCALRMMLCIGGPLPLLPSIK
FT                   GLAPVIFPLAYYQNVKKEKLGIKNFSTYEQVCKVAKVLSASQVEFKEDLDKLFKQAVKL
FT                   LSESNPGTASSISLKKYDEQVKYMDKAFSSNLSVDDYGEHSKKSSKPSSSIEV"
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SQ   Sequence 828 BP; 263 A; 133 C; 188 G; 244 T; 0 other;

hq897931 Length: 828  17-JUL-2011  Type: N  Check: 8794  ..

       1  atgtctaacg tcaggcaact taccgaaaag aaaattaggg aactcttggc
      51  tggtggtact gcagatgttg agatagaaac tgatgattca actccaggat
     101  ttaacttcaa gacgttttat gataataaca agggtgttga aatgactttc
     151  acaaattgtt tgaatatctt aaaatgcaga aaacagattt ttgctgcttg
     201  caaaagtggt aagtataaat tttgtgagaa aactattgtt tctacagctg
     251  ctgaggttgg tccagatgat tggactttta agagaacaga agctctgata
     301  agagtgaaga tggtcaacat ggtagagaaa agcaaaaatg aggctgccag
     351  gcaggaaatg tatgcacagg tgatggaatt accgttagta gctgcttatg
     401  ggttgaatgt gcctacttcg tatgactatt gtgctcttag gatgatgcta
     451  tgcattgggg gacccctacc tcttttgccc agcattaaag gccttgcacc
     501  ggttatcttc ccattggctt attatcaaaa tgtcaaaaag gagaagctag
     551  gcattaagaa tttctctact tatgagcagg tttgcaaagt agcaaaagtt
     601  ctttctgctt ctcaagtaga atttaaggaa gatctagaca agttgttcaa
     651  acaagctgtc aagttgttaa gcgaaagtaa ccctggtact gctagctcta
     701  tttcactcaa gaagtatgat gagcaagtta aatacatgga taaggctttc
     751  agttctaatt tgtctgtgga tgattacggt gaacattcaa agaagagctc
     801  caaacctagc tcatctatag aagtgtga