Sequence of DPV Rice black streaked dwarf virus
Rice black streaked dwarf virus isolate JSyangzhou5 capsid protein gene, complete cds.
ACC No: HQ916894
Dated: 2011-07-26 | Length: 1677 | CRC: -381176500
ID HQ916894; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
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AC HQ916894;
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DT 26-JUL-2011 (Rel. 109, Created)
DT 26-JUL-2011 (Rel. 109, Last updated, Version 1)
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DE Rice black streaked dwarf virus isolate JSyangzhou5 capsid protein gene,
DE complete cds.
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KW .
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OS Rice black streaked dwarf virus
OC Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC Fijivirus group 2.
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RN [1]
RP 1-1677
RA Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT ;
RL Submitted (23-JAN-2011) to the INSDC.
RL Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences,
RL No. 50.Zhongling Road, Nanjing, Jiangsu 210014, China
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FH Key Location/Qualifiers
FH
FT source 1. .1677
FT /organism="Rice black streaked dwarf virus"
FT /segment="10"
FT /host="rice"
FT /isolate="JSyangzhou5"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="Aug-2009"
FT /db_xref="taxon:10990"
FT CDS 1. .1677
FT /codon_start=1
FT /product="capsid protein"
FT /protein_id="AEK67404.1"
FT /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNNLFHE
FT LNIVKAPHVASSQATVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKDHIRSFFQNEHQ
FT PIFQTLTNNDLSEEFVGVTTFGLSLFATSKLDAEQIERVQIEALTEGNITLKPFSADGL
FT EVILDDSYIGIVGKIPGLEVHKLLDKCCREVPAQMGILTDEVRLLMRTGKLRIDGGYDF
FT NCPASTTDVTHYGGYDQFSRQMFERLNLFYNISLSIIPVSALKTVHLFEKELSVLDADK
FT SLLEQTWSAVASFVETWQVKSKVKADDPDEYEMTSLSTLRTNYDGTSTSSPFTDKKFID
FT WYIKTFSKTEKGSSLRRNELEEKSATSTSTTVKKVKIHFSVQYFDEFKVNGHEKSIVVQ
FT THKGEMSLDYYRKIGEVLSAIWKRGKSLAVPCFDYIKLGVEKAFHLAPVIMKKYNLTID
FT DIINFIDKGPSYLAKLDKIDDWSLISKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT NNLLKSDRDRLLKKALSANVSSSNTSSHEHTQKIVLNKVTR"
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SQ Sequence 1677 BP; 551 A; 310 C; 296 G; 520 T; 0 other;
hq916894 Length: 1677 26-JUL-2011 Type: N Check: 9266 ..
1 atggctgaca taagactcga tatagcgccc gatcttatcc ataatggtgt
51 accccagaga ctttccgata caataatttt aaacaaccga ccaacaatca
101 ctctgttatc tcatttcaac aatctatttc atgaattaaa cattgtcaaa
151 gcgccccacg ttgcatcttc ccaagctacc gttaatttgt acattcgcaa
201 acatctgttg acacgacttc acgatagact acaaaccgta gaaactagca
251 ccctacccaa catcacacaa cttaaagacc atattcgcag tttctttcaa
301 aatgaacacc aacctatttt tcagacccta acgaacaacg acctaagcga
351 agaatttgta ggtgtgacta cttttggact aagcttattt gctacctcca
401 aacttgatgc tgaacaaata gaacgtgtgc aaattgaggc cttaactgaa
451 ggaaacatta cgttgaagcc cttttccgct gatggtttag aagtcattct
501 cgatgatagt tatattggca tagttggcaa aattccaggt ttagaagttc
551 ataaattgtt agataaatgt tgtcgcgaag ttcctgctca aatgggaata
601 cttactgatg aagttagact tttaatgcgt actggtaaat tacgaattga
651 tggtggttat gatttcaatt gtcccgcaag cactacagac gttactcact
701 acggtggtta tgaccaattt tcacgtcaaa tgttcgaacg tttgaatcta
751 ttttataata ttagtctcag cataattccc gtttcagctc tgaaaacagt
801 tcatttattt gaaaaagaat taagtgtttt ggatgcagat aaatctttgc
851 tcgaacaaac ttggagtgca gtagcgtcat ttgttgaaac ttggcaagtt
901 aaatctaaag ttaaagctga tgatccagat gaatacgaaa tgaccagttt
951 gtccactttg cgcactaatt acgatggtac ttctacttct agtcctttta
1001 cagataagaa attcattgac tggtatatta agactttttc taaaactgag
1051 aaaggatcgt ctttgcgtcg aaatgaatta gaagagaaaa gtgccactag
1101 tacatcaact acagtaaaga aggttaaaat tcatttttcc gttcaatatt
1151 ttgacgaatt taaagttaat ggacacgaaa aaagcattgt agttcaaact
1201 cataaaggtg aaatgtcatt agattattat cgtaaaattg gcgaagtgtt
1251 gagtgcgatt tggaaacgcg gtaaatcttt ggctgtacct tgttttgatt
1301 acattaaact tggcgttgaa aaagcatttc atttggcacc agtaattatg
1351 aagaagtata acttgacgat cgacgatatt atcaacttca ttgataaagg
1401 accttcctat ttggctaagt tggacaaaat tgatgattgg tctttaattt
1451 caaagcttat tattactagt gttttaccta acatcattca agctgtttat
1501 aaaactgatc ctagtaataa tgttatgaac tcagtaatta tcagtagagc
1551 gaataacttg ctgaaatctg atagggacag gctattaaag aaggcacttt
1601 ccgccaacgt ttcttcctcc aacacatcta gtcatgagca cacacagaag
1651 atagtactaa acaaagtgac aagatga