Sequence of DPV Onion yellow dwarf virus

Onion yellow dwarf virus isolate Spanish polyprotein gene, partial cds.

ACC No: HQ918256

Dated: 2011-07-31 | Length: 1673 | CRC: -556727987

                
ID   HQ918256; SV 1; linear; genomic RNA; STD; VRL; 1673 BP.
XX
AC   HQ918256;
XX
DT   31-JUL-2011 (Rel. 109, Created)
DT   31-JUL-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Onion yellow dwarf virus isolate Spanish polyprotein gene, partial cds.
XX
KW   .
XX
OS   Onion yellow dwarf virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-1673
RA   Lunello P., Mansilla C., Sanchez F., Fresno J., Conci V., Ponz F.;
RT   "Identification of garlic viruses in Spain";
RL   Unpublished.
XX
RN   [2]
RP   1-1673
RA   Lunello P., Mansilla C., Sanchez F., Fresno J., Conci V., Ponz F.;
RT   ;
RL   Submitted (24-JAN-2011) to the INSDC.
RL   Biotecnologia, CBGP, M-40 km 38, Pozuelo de Alarcon, Madrid 28223, Spain
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1673
FT                   /organism="Onion yellow dwarf virus"
FT                   /host="garlic"
FT                   /isolate="Spanish"
FT                   /mol_type="genomic RNA"
FT                   /country="Spain"
FT                   /collection_date="Mar-2005"
FT                   /PCR_primers="fwd_name: Sprimer, fwd_seq:
FT                   ggnaayaayagyggncarcc, rev_name: M4T, rev_seq:
FT                   gttttcccagtcacgacttttttttttttttt"
FT                   /db_xref="taxon:43130"
FT   CDS             <1. .1410
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /note="contains coat protein and nuclear inclusion protein"
FT                   /protein_id="AEK81556.1"
FT                   /translation="GNNSGQPSTVVDNTIMVMLSVQYALRKCEIETSKQSEIIKYFCNG
FT                   DDLLIAVHPDYEHILDHFKQYFHELGLDYDFSNRSKSKEDVYFMSHRGLLRDGIYIPKL
FT                   DRERVVSILEWDRADKPEHRMEAICASMIEAWGYPELVHEIRKFYQWLLEQAPYNVIAQ
FT                   SGKAPYIAETALRKLFTDVDASEEELEKYYDMYMELDNEETIPKEVRYQAGDGEDAAAQ
FT                   TSTTKQIARQKDKDVDAGTTGKFAVPRIKALSDKMRFPKVGKKVVLNAEHLLAYKPEQI
FT                   ELYNTRSTQQQFETWYTSIKKDYDVDDEQMKIILDGLMVWCIENGTSPNLAGNWTMMDG
FT                   DEQVEYPLAPILDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLTELSLA
FT                   RYAFDFYEMTSKTPKRAKEAHMQMKAAAVRGATNRLFGLDGNVNPIEXAPERXXAADIN
FT                   KNHPPLLGIKM"
FT   3'UTR           1411. .1673
XX
SQ   Sequence 1673 BP; 603 A; 288 C; 370 G; 402 T; 10 other;

hq918256 Length: 1673  31-JUL-2011  Type: N  Check: 8429  ..

       1  gggaataaca gcggccaacc atccacagtt gtcgacaata caataatggt
      51  gatgcttagt gtgcaatatg ctttgcggaa gtgtgaaatt gaaacaagca
     101  agcaaagcga aatcattaaa tatttttgta atggcgatga tttgttaata
     151  gccgtgcatc cagattatga acacatactt gatcatttta aacaatactt
     201  tcacgaactt gggttagact atgatttttc caatagaagt aaatccaagg
     251  aagatgttta ctttatgtcc cacagaggat tactcagaga cggcatttac
     301  attccgaaat tggatagaga gcgtgtcgta tcaatacttg aatgggaccg
     351  tgcagataaa cctgaacatc ggatggaagc tatatgtgcg tccatgattg
     401  aagcatgggg ttaccctgag cttgttcatg aaattagaaa attctatcag
     451  tggttactag aacaagctcc gtacaatgta atagcgcaaa gtggaaaagc
     501  accctatata gcggaaacag cactgagaaa attgttcact gatgttgacg
     551  ctagtgagga ggaactagag aaatactacg acatgtacat ggaacttgac
     601  aatgaagaga caattccaaa agaggttcga tatcaagctg gcgatgggga
     651  agatgcagca gcacaaacaa gcacgacgaa gcaaattgcg agacaaaaag
     701  ataaagacgt tgacgctgga acaaccggta agtttgcagt gcccaggatt
     751  aaagcgttgt cagacaaaat gcgatttcca aaagttggaa agaaagtagt
     801  gttaaacgca gagcacttat tagcatacaa accagagcaa atcgagttgt
     851  acaacacgag gtcaacgcaa caacagttcg aaacttggta cacgtcaatt
     901  aagaaggatt atgacgtgga tgacgaacaa atgaagatta tactagatgg
     951  tttaatggtt tggtgcattg aaaacggaac ttccccaaat ctagcaggga
    1001  attggactat gatggacggt gatgaacaag ttgaatatcc attagcacca
    1051  attttggata atgcaaaacc gacatttagg cagataatgg cgcatttcag
    1101  tgatgcagct gaagcatata ttgaatatcg aaacgccaca gaaaaataca
    1151  tgccccggta tggacttcag cggaatctaa cagaattaag tttagcacgt
    1201  tacgcattcg acttttatga aatgacttca aaaactccca agcgagctaa
    1251  ggaagcacac atgcaaatga aggcagcagc agttagaggg gcaactaacc
    1301  gtttgtttgg cctggatggt aacgtaaacc caatagargr ggccccggaa
    1351  aggcmcmcag cagcagatat aaataagaat caccccccgt tgcttggtat
    1401  taaaatgtaa tcctgcaggg aagtytttag ttttatatat aagtatataa
    1451  aaacgtatgt aatatgtaat ccttttcgct tcgtttamcc tgacttcgag
    1501  caacgaaatg tggtgtmccc ctagttgtgg cgaacgatac ggttaaatat
    1551  ttgtgattaa tgtcgagctt catgagagtg atgtwtcccg aggtgaatct
    1601  ttgcttgaat tcsgargcca aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
    1651  aaaaaaaaaa aaaaaaaaaa aaa