Sequence of DPV Tomato spotted wilt virus

Tomato spotted wilt virus clone Scafati-T1 nucleocapsid protein (N) gene, complete cds.

ACC No: JF290419

Dated: 2011-06-05 | Length: 754 | CRC: -525633087

                
ID   JF290419; SV 1; linear; genomic RNA; STD; VRL; 754 BP.
XX
AC   JF290419;
XX
DT   05-JUN-2011 (Rel. 109, Created)
DT   05-JUN-2011 (Rel. 109, Last updated, Version 1)
XX
DE   Tomato spotted wilt virus clone Scafati-T1 nucleocapsid protein (N) gene,
DE   complete cds.
XX
KW   .
XX
OS   Tomato spotted wilt virus
OC   Viruses; ssRNA negative-strand viruses; Bunyaviridae; Tospovirus.
XX
RN   [1]
RP   1-754
RA   Carrieri R., Sorrentino R., Lahoz E., Alioto D.;
RT   "First Report of Tomato spotted wilt virus on Tobacco in Campania, Italy";
RL   Plant Dis. 95(5):611-611(2011).
XX
RN   [2]
RP   1-754
RA   Carrieri R.;
RT   ;
RL   Submitted (02-FEB-2011) to the INSDC.
RL   Arboricoltura, Botanica e Patologia Vegetale, University of Naples
RL   'Federico II' - Faculty of Agriculture, Via Universita 100, Portici, Naples
RL   80055, Italy
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .754
FT                   /organism="Tomato spotted wilt virus"
FT                   /host="Nicotiana tabacum; cultivar Burley"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /collection_date="Jul-2010"
FT                   /clone="Scafati-T1"
FT                   /PCR_primers="fwd_name: TSWV-F, fwd_seq:
FT                   atgtctaaggttaagctc, rev_name: TSWV-R, rev_seq:
FT                   ttaagcaagttctgtgag"
FT                   /db_xref="taxon:11613"
FT   gene            10. .753
FT                   /gene="N"
FT   CDS             10. .753
FT                   /codon_start=1
FT                   /gene="N"
FT                   /product="nucleocapsid protein"
FT                   /protein_id="AEG76942.1"
FT                   /translation="MSKVKLTKESIVALLTQGKDLEFEEDQNLVAFNFKTFCLENLDQI
FT                   KKMSVISCLTFLKNRQSIMKVIKQSDFTFGKITIKKTSDRIGATDMTFRRLDSLIRVRL
FT                   VEETGNSENLNTIKSKIASHPLIQAYGLPLDDAKSVRLAIMLGGSLPLIASVDSFEMIS
FT                   VVLAIYQDAKYKDLGIDPKKYDTREALGKVCTVLKSKAFEMNEDQVKKGKEYAAILSSS
FT                   NPNAKGSIAMEHYSETLNKFYEMFG"
XX
SQ   Sequence 754 BP; 241 A; 127 C; 172 G; 214 T; 0 other;

jf290419 Length: 754  05-JUN-2011  Type: N  Check: 5837  ..

       1  gatattccta tgtctaaggt taagctcact aaggaaagca ttgttgcttt
      51  gttgacacaa ggcaaagacc ttgagtttga ggaagatcag aatctggtag
     101  cattcaactt caagactttt tgtctggaaa accttgacca gatcaaaaag
     151  atgagtgtta tttcatgtct gacattcctg aagaatcgtc agagcataat
     201  gaaggttatt aagcaaagtg attttacttt tggtaaaatt accataaaga
     251  aaacttcaga caggattgga gccactgaca tgaccttcag aaggcttgat
     301  agcttgatca gggtcaggct tgttgaggaa actgggaatt ccgagaatct
     351  caatactatc aaatctaaga ttgcttccca ccctttgatt caagcctatg
     401  gattacctct tgatgatgca aagtctgtga ggcttgccat aatgctggga
     451  ggtagcttac ctcttattgc ttcagtcgat agctttgaga tgatcagtgt
     501  tgtcttggct atatatcagg atgcaaaata caaggatctt gggatcgacc
     551  caaagaagta tgacaccagg gaagccttag ggaaagtttg cactgtgctg
     601  aaaagcaaag catttgaaat gaatgaagat caggtgaaga aggggaaaga
     651  gtatgctgct atacttagct ccagcaatcc taatgctaaa ggaagtattg
     701  ctatggaaca ttacagtgaa actcttaaca agttctatga aatgtttggg
     751  taaa