Sequence of DPV Zucchini yellow mosaic virus

Zucchini yellow mosaic virus isolate 226-09 polyprotein gene, partial cds.

ACC No: JF308188

Dated: 2012-10-30 | Length: 1064 | CRC: -1066428423

                
ID   JF308188; SV 1; linear; genomic RNA; STD; VRL; 1064 BP.
XX
AC   JF308188;
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DT   20-APR-2011 (Rel. 108, Created)
DT   30-OCT-2012 (Rel. 114, Last updated, Version 2)
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DE   Zucchini yellow mosaic virus isolate 226-09 polyprotein gene, partial cds.
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KW   .
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OS   Zucchini yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1064
RA   Vucurovic A., Bulajic A., Stankovic I., Ristic D., Berenji J., Jovic J.,
RA   Krstic B.;
RT   "Non-persistently aphid-borne viruses infecting pumpkin and squash in
RT   Serbia and partial characterization of Zucchini yellow mosaic virus
RT   isolates";
RL   Eur. J. Plant Pathol. 133(4):935-947(2012).
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RN   [2]
RP   1-1064
RA   Vucurovic A., Bulajic A., Stankovic I., Ristic D., Berenji J., Jovic J.,
RA   Krstic B.;
RT   ;
RL   Submitted (08-FEB-2011) to the INSDC.
RL   Plant Pathology, Faculty of Agriculture, University of Belgrade, Nemanjina
RL   6, Belgrade 11080, Serbia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1064
FT                   /organism="Zucchini yellow mosaic virus"
FT                   /host="Cucurbita pepo cv. Tosca"
FT                   /isolate="226-09"
FT                   /mol_type="genomic RNA"
FT                   /country="Serbia"
FT                   /collection_date="2009"
FT                   /note="PCR_primers=fwd_name: ZYMV CPfwd, rev_name: ZYMV
FT                   CPrev"
FT                   /db_xref="taxon:12232"
FT   CDS             <1. .917
FT                   /codon_start=3
FT                   /product="polyprotein"
FT                   /protein_id="AEB71532.1"
FT                   /translation="SELARYLQALHQDIFFEQGDTVMLQSGTQPTVADAGATKKNNEDD
FT                   KGKNKDATGSGSGEKTMAAVTKDKDVNAGSHGKIVPRLSKITKKMSLPRVKGNVILDID
FT                   HLLEYKPDQIELYNTRASHQQFASWFNQVKTEYDLNEQQMGVVMNGFMVWCIENGTSPD
FT                   INGVWVMMDGNEQVEYPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNAEAPYMPRYGL
FT                   LRNLRDRSLARYAFDFYEVNSKTPERAREAVAQMKAAALSNVSSRLFGLDGNVATTSED
FT                   TERHTARDVNRNMHTLLGVNTMQ"
FT   mat_peptide     <1. .77
FT                   /product="nuclear inclusion B"
FT                   /note="NIb"
FT   mat_peptide     78. .914
FT                   /product="coat protein"
FT                   /note="CP"
FT   3'UTR           918. .>1064
XX
SQ   Sequence 1064 BP; 325 A; 219 C; 261 G; 259 T; 0 other;

jf308188 Length: 1064  30-OCT-2012  Type: N  Check: 9319  ..

       1  caagtgaact ggcacgttat ctacaagctc tccaccaaga catcttcttt
      51  gaacaaggag acactgtaat gctccaatca ggcactcagc caactgtggc
     101  agacgctgga gccacaaaga aaaacaacga agatgacaaa gggaaaaaca
     151  aggatgctac aggctccggc tcaggtgaga aaacaatggc agctgtcacg
     201  aaggacaagg atgtaaatgc tggttctcat gggaaaattg tgccgcgtct
     251  ttcgaagata acaaagaaga tgtcactgcc acgcgtgaaa ggaaatgtga
     301  tactcgacat tgatcacttg ctggagtata agccggatca aattgagtta
     351  tacaacacac gagcgtctca tcagcaattc gcctcttggt tcaaccaagt
     401  taaaactgaa tatgatctga atgaacaaca gatgggagtt gtaatgaatg
     451  gtttcatggt ttggtgcatt gaaaatggca cgtcacccga cattaacgga
     501  gtatgggtta tgatggacgg taatgagcag gttgaatatc ctttgaaacc
     551  aatagttgaa aatgcaaagc caacgctgcg acaaataatg catcactttt
     601  cagatgcagc ggaggcatat atagagatga gaaatgcaga ggcaccatac
     651  atgccgaggt atggtttgct tcgaaactta cgggatagga gtttggcacg
     701  atatgctttc gacttctacg aagtcaattc caaaactccg gagagagccc
     751  gcgaagctgt tgcgcagatg aaagcagcag cccttagcaa tgtttcttca
     801  aggttgtttg gccttgatgg aaatgttgcc accactagcg aagacactga
     851  acggcacact gcacgtgatg ttaataggaa catgcacacc ttgctaggtg
     901  tgaatacaat gcagtaaagg gtaggtcgcc tacctaggtt atcgtttcgc
     951  tgccgacgta attctaatat ttaccgcttt atgtgatgtc tttagatttc
    1001  tagagtgggc ctcccacctt taaagcgtaa agtttatgtt agttgtccag
    1051  gagtgccgta gtcc