Sequence of DPV Zucchini yellow mosaic virus

Zucchini yellow mosaic virus isolate ZYMV-Ahlat coat protein gene, partial cds.

ACC No: JF317297

Dated: 2011-08-03 | Length: 837 | CRC: -1371318458

                
ID   JF317297; SV 1; linear; genomic RNA; STD; VRL; 837 BP.
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AC   JF317297;
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DT   03-AUG-2011 (Rel. 109, Created)
DT   03-AUG-2011 (Rel. 109, Last updated, Version 1)
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DE   Zucchini yellow mosaic virus isolate ZYMV-Ahlat coat protein gene, partial
DE   cds.
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KW   .
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OS   Zucchini yellow mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-837
RA   Sipahioglu H.M.;
RT   "Cloning and sequence analysis of coat protein gene for characterization of
RT   Zucchini yellow mosaic virus isolated from squash and muskmelon in Turkey";
RL   Unpublished.
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RN   [2]
RP   1-837
RA   Sipahioglu H.M.;
RT   ;
RL   Submitted (25-JAN-2011) to the INSDC.
RL   Department of Plant Protection, University of Yuzuncu Yil, Van 65080,
RL   Turkey
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FH   Key             Location/Qualifiers
FH
FT   source          1. .837
FT                   /organism="Zucchini yellow mosaic virus"
FT                   /host="Cucumis melo (muskmelon)"
FT                   /isolate="ZYMV-Ahlat"
FT                   /mol_type="genomic RNA"
FT                   /country="Turkey"
FT                   /collection_date="2010"
FT                   /proviral
FT                   /PCR_primers="fwd_name: Z-HindIII-F, fwd_seq:
FT                   cagtaagctttcaggcactcagccaact, rev_name: Z-SacI-R, rev_seq:
FT                   cagtgagctcctgcattgtattcacacctagt"
FT                   /db_xref="taxon:12232"
FT   CDS             <1. .>837
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AEL12188.1"
FT                   /translation="SGTQPTVADAGATKKEKEDDKRKDKGVTGSDSGEKTVAAVTKDKD
FT                   VNAGSHGKIVPRLSKITKKMSLPRVKGNVILDIDHLLEYKPDQIELYNTRASHQQFASW
FT                   FNQVKTEYDLNEQQMGVVMNGFMVWCIENGTSPDINGVWVMMDGNEQVEYPLKPIVENA
FT                   KPTLRQIMHHFSDAAEAYIEMRNAEAPYMPRYGLLRNLRDRSLARYAFDFYEVNSKTPE
FT                   RAREAVAQMKAAALSNVSSRLFGLDGNVATTSEDTERHTARDVNRNMHTLLGVNTMQ"
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SQ   Sequence 837 BP; 270 A; 164 C; 214 G; 189 T; 0 other;

jf317297 Length: 837  03-AUG-2011  Type: N  Check: 6032  ..

       1  tcaggcactc agccaactgt ggcagacgct ggagccacaa agaaagaaaa
      51  agaagatgac aaaaggaaag acaagggtgt tacaggctcc gactcaggtg
     101  agaaaacagt ggcagctgtc acgaaggaca aggatgtaaa tgctggttct
     151  catgggaaaa ttgtgccgcg tctttcgaag ataacaaaga agatgtcact
     201  gccacgcgta aaaggaaatg tgatactcga cattgatcac ttgctggagt
     251  acaagccgga tcaaattgag ttatacaaca cacgagcgtc tcatcagcaa
     301  ttcgcctctt ggttcaatca agttaaaaca gaatatgatc tgaatgagca
     351  acagatggga gttgtaatga atggtttcat ggtttggtgc attgaaaatg
     401  gcacgtcacc cgacattaac ggagtatggg ttatgatgga cggcaatgag
     451  caggttgaat atcctttgaa accaatagtt gaaaatgcaa agccaacgct
     501  gcgacaaata atgcatcatt tttcagatgc agcggaggca tatatagaga
     551  tgagaaatgc agaggcacca tacatgccga ggtatggttt gcttcgaaac
     601  ttacgggata ggagtttggc acgatatgct ttcgacttct acgaagtcaa
     651  ttccaagact ccagagagag ctcgcgaagc tgttgcgcag atgaaagcag
     701  cagccctcag caatgtttct tcaaggttgt ttggccttga tggaaatgtt
     751  gccaccacta gcgaagacac tgaacggcac actgcacgtg atgttaatag
     801  gaacatgcac accttactag gtgtgaatac aatgcag