Sequence of DPV Hardenbergia mosaic virus

Hardenbergia mosaic virus isolate Pem-1 coat protein gene, partial cds.

ACC No: JF427596

Dated: 2011-10-06 | Length: 828 | CRC: -692965349

                
ID   JF427596; SV 1; linear; viral cRNA; STD; VRL; 828 BP.
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AC   JF427596;
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DT   19-SEP-2011 (Rel. 110, Created)
DT   06-OCT-2011 (Rel. 110, Last updated, Version 2)
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DE   Hardenbergia mosaic virus isolate Pem-1 coat protein gene, partial cds.
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KW   .
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OS   Hardenbergia mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-828
RX   PUBMED; 21744001.
RA   Coutts B.A., Kehoe M.A., Webster C.G., Wylie S.J., Jones R.A.;
RT   "Indigenous and introduced potyviruses of legumes and Passiflora spp. from
RT   Australia: biological properties and comparison of coat protein nucleotide
RT   sequences";
RL   Arch. Virol. 156(10):1757-1774(2011).
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RN   [2]
RP   1-828
RA   Coutts B.A., Kehoe M.A., Webster C.G., Wylie S.J., Jones R.A.C.;
RT   ;
RL   Submitted (09-FEB-2011) to the INSDC.
RL   Plant Virology, Department of Agriculture and Food-Western Australia, 3
RL   Baron-Hay Court, South Perth, Western Australia 6151, Australia
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FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /organism="Hardenbergia mosaic virus"
FT                   /host="Hardenbergia comptoniana"
FT                   /isolate="Pem-1"
FT                   /mol_type="viral cRNA"
FT                   /country="Australia:Pemberton, Western Australia"
FT                   /collected_by="Stephen Wylie"
FT                   /collection_date="2007"
FT                   /db_xref="taxon:409486"
FT   CDS             <1. .828
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="ADZ45576.1"
FT                   /translation="PATVSKKSIDAGLDSKKEKKATDGGTKEKSKASASTAKDKDVDAG
FT                   SQGKVVPRLQKITKKMNLPMVKGNMILNLDHLLEYKPEQTKLFNTRATDSQFASWFEAV
FT                   QEEYELDDAQMSVVMNGFMVWCIDNGTSPDVNGVWVMMDGDEQVEYPLKPMVENAKPTL
FT                   RQIMHHFSDAAEAYIEMRCSTGPYMPRYGLLRNLRDRNLARYAFDFYEVNAKTSTRARE
FT                   AVAQMKAAALSNVNTKMFGLDGNVATISENTERHTAKDVNQDMHTLLGMGQVQ"
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SQ   Sequence 828 BP; 271 A; 156 C; 219 G; 182 T; 0 other;

jf427596 Length: 828  06-OCT-2011  Type: N  Check: 2283  ..

       1  ccagcaacag ttagcaagaa gagcatagac gctggtctag atagcaagaa
      51  agaaaagaag gcaactgatg ggggcaccaa agaaaagagt aaggcaagtg
     101  cctccacagc aaaagacaaa gatgttgacg ctggttcaca aggaaaggtt
     151  gtaccacgtc tccaaaagat aacaaagaaa atgaatctcc caatggttaa
     201  gggcaacatg attttgaatt tggatcatct cctagagtac aagccagaac
     251  aaacaaagtt attcaatacc agagcaactg attctcagtt tgcttcatgg
     301  tttgaggctg ttcaagaaga gtacgagtta gacgacgcgc aaatgagtgt
     351  cgtaatgaat ggattcatgg tgtggtgcat tgataatggc acttcgccag
     401  atgtgaatgg agtctgggtt atgatggacg gagatgagca agtagaatat
     451  ccgctgaaac caatggtgga gaatgcaaag cccacactga ggcagatcat
     501  gcaccatttc tctgacgcag ctgaagcgta cattgaaatg aggtgctcaa
     551  ctggaccgta catgcctagg tatggtctac tgcgcaattt gagagacagg
     601  aacttggcgc gttatgcttt tgacttttat gaagtcaacg caaagacttc
     651  gacgcgtgca agagaagcag tagcgcagat gaaagctgca gctctcagca
     701  atgttaacac caagatgttt ggcttggacg ggaatgttgc aacaatcagc
     751  gagaacactg aaaggcacac tgctaaggat gtgaatcagg atatgcatac
     801  cttgctaggt atgggtcaag tgcagtga