Sequence of DPV Sida mosaic Alagoas virus
Sida mosaic Alagoas virus isolate BgV02B.1.C34 segment DNA-B, complete sequence.
ACC No: JF694473
Dated: 2012-03-25 | Length: 2614 | CRC: 441268180
ID JF694473; SV 1; circular; genomic DNA; STD; VRL; 2614 BP.
XX
AC JF694473;
XX
DT 02-JAN-2012 (Rel. 111, Created)
DT 25-MAR-2012 (Rel. 112, Last updated, Version 2)
XX
DE Sida mosaic Alagoas virus isolate BgV02B.1.C34 segment DNA-B, complete
DE sequence.
XX
KW .
XX
OS Sida mosaic Alagoas virus
OC Viruses; ssDNA viruses; Geminiviridae; Begomovirus;
OC unclassified Begomovirus.
XX
RN [1]
RP 1-2614
RX PUBMED; 22397740.
RA Wyant P.S., Strohmeier S., Schafer B., Krenz B., Assuncao I.P., Lima G.S.,
RA Jeske H.;
RT "Circular DNA genomics (circomics) exemplified for geminiviruses in bean
RT crops and weeds of northeastern Brazil";
RL Virology 427(2):151-157(2012).
XX
RN [2]
RP 1-2614
RA Wyant P.S., Strohmeier S., Schaefer B., Krenz B., Assuncao I.P.,
RA Lima G.S.A., Jeske H.;
RT ;
RL Submitted (15-MAR-2011) to the INSDC.
RL Molecular Biology and Plant Virology, University of Stuttgart,
RL Pfaffenwaldring 57, Stuttgart, Baden-Wurttenberg 70550, Germany
XX
FH Key Location/Qualifiers
FH
FT source 1. .2614
FT /organism="Sida mosaic Alagoas virus"
FT /segment="DNA-B"
FT /host="Sida sp."
FT /isolate="BgV02B.1.C34"
FT /mol_type="genomic DNA"
FT /country="Brazil"
FT /db_xref="taxon:1046571"
FT gene 527. .1297
FT /gene="BV1"
FT CDS 527. .1297
FT /codon_start=1
FT /gene="BV1"
FT /product="nuclear shuttle protein"
FT /db_xref="UniProtKB/TrEMBL:G9CLY9"
FT /protein_id="AEI91394.1"
FT /translation="MYAAKFRRGQSSNYRRNYKRKNVFKTVYGVKRYDGKRGFNIQNKA
FT HDDSKMSAQRIHENQFGPEFVMAHNTAISTFITFPSLCKTEPNRSRSYIKLKRLRFKGT
FT VKIERVHTDVIMDGSSPKTEGVFSLVVVVDRKPHLGPSGCLHTFDELFGARIHSHGNLA
FT ITPSLKDRFYIRHVHKRVLSVEKDTLMVDIEGTTSLSNRRFNCWSSFKDVDRDSCNGVY
FT ANISKNALLVYYCWMSDSSSKASTFVSYDLDYIG"
FT gene complement(1362. .2243)
FT /gene="BC1"
FT CDS complement(1362. .2243)
FT /codon_start=1
FT /gene="BC1"
FT /product="movement protein"
FT /db_xref="UniProtKB/TrEMBL:G9CLZ0"
FT /protein_id="AEI91395.1"
FT /translation="MESQLVNPPNAFNYIESQRDEYQLSHDLTEIVLQFPSAAAQISAR
FT LSRSCMKIDHCVIEYRQQVPINAAGSVIVEIHDKRMTENESLQASWTFPIRCNIDLHYF
FT SSSFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILS
FT KQFTDRDIDFCHVGYGKWERKLIRSTSTTTHGLPSPLSIDPGETWAAKSTIGIGQSSAD
FT SEIENAALPYRGLHRLGTSLLDPGDSASIVAARRTESHITMSEAQLNDLVRTAVQECIK
FT TNCIAPQPKPLN"
XX
SQ Sequence 2614 BP; 658 A; 538 C; 619 G; 799 T; 0 other;
jf694473 Length: 2614 25-MAR-2012 Type: N Check: 2750 ..
1 accggatggc cgcgcgattt tcccccccct acgtggcgct ctggtgcccg
51 ctcgattccc tcccccccct acgtggcgct ctggtgcccg ctcgattccc
101 tccccctctc acgtgtcgct ctgttctcgc gcgtgtcatt aaactgtttt
151 taacaattta gcgctttttt ggagtccgcg aattgagcta agcgcatttt
201 ttgagttccg gaacggtaca accataataa atgctttaat tcaaattaaa
251 gttgtctgac cccttttcgt caaatcagtt cgcgctcgtt gtacttcatt
301 gtttttctcg cgatttgttc tagaccgttt gataacatta ttgtgcaata
351 ctttattgca tcattgaagc agtattgagt ggtgcgagaa aaatatagac
401 ccacattact acatgttcta cgtggaccag ttaagtgtgt tgtatgcatg
451 tatgttaatt taggaattgt atatttaaag tatgtgggtc ttgagtagga
501 tatctcgttc gaccgactaa tttaatatgt atgcagccaa gtttagacgt
551 ggtcaatcta gtaattaccg tcgtaattac aaaaggaaga acgtctttaa
601 gactgtttat ggtgttaagc ggtacgatgg gaaacgtgga tttaatattc
651 agaacaaggc ccatgatgat agtaagatgt cggcccagcg tattcacgag
701 aaccagtttg ggccagagtt tgtaatggcc cacaacacag ccatttcaac
751 gttcatcaca tttccaagcc tatgtaagac ggagccgaac cgaagcaggt
801 cctatattaa gttgaaacga cttcgtttta agggtactgt caagattgaa
851 cgggttcaca ctgacgtcat tatggatgga tcaagcccaa aaaccgaagg
901 agtattttca ttggtcgttg tggtggaccg gaaacctcat ttgggtccat
951 ctggatgtct ccatacgttt gatgagctct ttggggccag gatccacagt
1001 catggtaatt tagccataac cccgtccctt aaagaccgtt tctatatacg
1051 acatgtgcac aaacgtgttc tgtctgtgga gaaggacacc ctaatggttg
1101 atattgaagg gacgacatca ctctctaaca ggcgttttaa ctgttggtcc
1151 tcttttaagg atgtagaccg ggattcatgt aacggtgttt atgcaaacat
1201 aagcaagaac gccctgttag tttattactg ttggatgtct gactcttcgt
1251 ccaaggcatc gacatttgta tcatatgatc ttgactatat tggttaatga
1301 taatattgtt ttacaataca tgataatggc tctttgagcc ttaattaaca
1351 taataatgga tttaatttaa aggtttgggc tggggagcta tacaatttgt
1401 cttgatacat tcctggaccg cagtcctgac taggtcgttt aattgggcct
1451 ctgacatggt gatatgcgat tctgtccttc ttgcagcaac aattgaggct
1501 gagtctcctg ggtctaacaa gctggtcccc agtctgtgta ggcctcgata
1551 tgggagtgct gcgttctcta tttcagaatc ggcactggat tgtccgatcc
1601 ctatggtact ctttgcagcc caggtctctc ctggatcaat ggatagtggg
1651 ctaggaagcc catgtgttgt tgttgaggtg gatcggatca atttcctttc
1701 ccatttgcca tagcccacat ggcagaagtc gatatctctg tctgtaaact
1751 gtttagacaa tattttgact gtcggtgctc ggaaaggaat atccacggaa
1801 tgtttcgccg ttgaaagctt cagctttccc ttgaacttcg cgaagtgggt
1851 cctctgatga acatttgtgt cgctgaccct gtagtacagc ttccaaggga
1901 ttgggtcctt cagggagaag aaggacgagg agaaatagtg gagatctatg
1951 ttacatctga tcggaaaagt ccacgacgcc tgtaaggatt cgttttcagt
2001 cattctcttg tcgtggatct ccactatgac ggaacctgcg gcgtttatcg
2051 gtacttgttg tctgtattcg atgacgcaat ggtcgatctt catacagcta
2101 cgactgagcc tggcacttat ctgagccgcc gcagaaggaa actgtagtac
2151 gatctcagtt aggtcatgag aaagttgata ctcgtcacgc tgagactcta
2201 tataattaaa tgcatttggc ggattaacta actgagattc catttgaact
2251 aattaatctg aaagagaagg ccgcgcagcg gaatgttcaa gtgatttgaa
2301 aaggcgatta tcgaacgggg aagacgatct gagttagggt ttcgtcagtt
2351 tctggacgga ttaagaggag atatgagatg aaatgggtgt tatctacagg
2401 agtgtagagg tgttgtttga gtctatactt actgggctgg gagtaattat
2451 atagcccata aaaagagtgg cattcttgta aataaggctg gacaccaatt
2501 ggagtctctc aactcttttg ctatgcaatc ggtgtctgga gtctcattta
2551 tagtagaacc ctcaatagaa ctttagatcc tgttcgcaca cctggcggcc
2601 atccgtataa tatt