Sequence of DPV Sweet potato virus C

Sweet potato virus C isolate HN:5C:08 coat protein gene, partial cds.

ACC No: JF699627

Dated: 2013-03-31 | Length: 939 | CRC: 24254110

                
ID   JF699627; SV 1; linear; genomic RNA; STD; VRL; 939 BP.
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AC   JF699627;
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DT   31-MAR-2013 (Rel. 116, Created)
DT   31-MAR-2013 (Rel. 116, Last updated, Version 1)
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DE   Sweet potato virus C isolate HN:5C:08 coat protein gene, partial cds.
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KW   .
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OS   Sweet potato virus C
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-939
RA   Muhammad K., Tugume A.K., Valkonen J.P.T.;
RT   "Detection and characterization of viruses in sweet potatoes (Ipomoea
RT   batatas L.) from Guatemala and Honduras";
RL   Unpublished.
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RN   [2]
RP   1-939
RA   Muhammad K., Tugume A.K., Valkonen J.P.T.;
RT   ;
RL   Submitted (16-MAR-2011) to the INSDC.
RL   Department of Agricultural Science, University of Helsinki,
RL   Latokartanonkaari 7, Helsinki FIN-00014, Finland
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FH   Key             Location/Qualifiers
FH
FT   source          1. .939
FT                   /organism="Sweet potato virus C"
FT                   /host="Ipomoea batatas"
FT                   /isolate="HN:5C:08"
FT                   /mol_type="genomic RNA"
FT                   /country="Honduras:Copan"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:930881"
FT   CDS             <1. .>939
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="capsid protein"
FT                   /protein_id="AFD22454.1"
FT                   /translation="SGNPSEFKDAGANPPAPKPKGPYTAPEITEITEPEDPKQAALREA
FT                   RQKQPAVTPESYGRDTGEKPMRSVSPQRVKDKDVNVGTTGTFLVPRVKLHTSKMRQPRV
FT                   NGISVVNLQHLATYEPEQHNIGNTRSTQEQFQTWYEGVKGDYGVDDAGMAILLNGLMVW
FT                   CIENGTSPNINGVWTMMDGDEQVTYPIKPLLDHAVPTFRQIMTHFSDVAEAYIEMRNRT
FT                   KAYMPRYGLQRNLTDMSLARYAFDFYELHSTTPTRAKEAHMQMKAAALKNAHNRLFGLD
FT                   GNVSTQEEDTERHTATDVTRNIHNLLGMRGVH"
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SQ   Sequence 939 BP; 307 A; 196 C; 221 G; 215 T; 0 other;

jf699627 Length: 939  31-MAR-2013  Type: N  Check: 5906  ..

       1  tctggcaacc cctctgaatt taaagatgca ggtgcgaacc caccagcacc
      51  aaagccaaaa gggccgtata cagcaccaga aatcacagaa attactgagc
     101  ccgaggatcc caaacaagct gcgcttcgtg aagctagaca gaaacaacct
     151  gctgtcacac ccgaatcata cggtagagat acaggtgaga aacctatgcg
     201  ctctgtttca ccacaaaggg taaaagacaa ggatgtcaat gttggtacga
     251  caggtacatt tttagtacca cgagttaagc ttcatactag taaaatgcgc
     301  caaccgagag tcaatggaat ctctgtagta aacttacaac accttgcaac
     351  ctacgaacct gagcaacata acattgggaa tacacgctca acccaggaac
     401  agtttcagac atggtatgaa ggtgtcaagg gtgattatgg tgttgatgac
     451  gctggaatgg caatcttgtt gaatggattg atggtatggt gcatagagaa
     501  tggaacatct ccaaatataa atggcgtttg gacgatgatg gatggggatg
     551  aacaagtgac gtatcccata aagccattac tggatcatgc agtgcctact
     601  tttaggcaaa tcatgacaca cttcagtgac gttgctgaag cgtatataga
     651  aatgagaaat cgcaccaagg catatatgcc taggtatgga ttacaacgta
     701  atttgactga tatgagtctt gcgcgatacg catttgattt ctatgagctg
     751  cattcaacaa cacctacacg tgctaaagaa gcacacatgc agatgaaagc
     801  agctgcactt aagaatgcgc ataatcggtt gttcggttta gatggaaacg
     851  tctccacgca agaagaggat acggagaggc acactgcgac tgatgttact
     901  agaaatatac ataacctctt aggaatgagg ggtgtgcac