Sequence of DPV Pea enation mosaic virus-2
Pea enation mosaic virus-2 strain WA RNA-dependent RNA-polymerase, 33 kDa protein, long-distance movement protein, and cell-to-cell movement protein genes, complete cds.
ACC No: JF713435
Dated: 2011-10-06 | Length: 4197 | CRC: -207118122
ID JF713435; SV 1; linear; genomic RNA; STD; VRL; 4197 BP. XX AC JF713435; XX DT 21-AUG-2011 (Rel. 109, Created) DT 06-OCT-2011 (Rel. 110, Last updated, Version 2) XX DE Pea enation mosaic virus-2 strain WA RNA-dependent RNA-polymerase, 33 kDa DE protein, long-distance movement protein, and cell-to-cell movement protein DE genes, complete cds. XX KW . XX OS Pea enation mosaic virus-2 OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus. XX RN [1] RP 1-4197 RX PUBMED; 21837418. RA Vemulapati B., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.; RT "Genomic characterization of pea enation mosaic virus-2 from the Pacific RT Northwestern USA"; RL Arch. Virol. 156(10):1897-1900(2011). XX RN [2] RP 1-4197 RA Vemulapati B.M., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.; RT ; RL Submitted (21-MAR-2011) to the INSDC. RL Plant Pathology, Washington State University, 345, Johnson Hall, Pullman, RL WA 99164-6430, USA XX FH Key Location/Qualifiers FH FT source 1. .4197 FT /organism="Pea enation mosaic virus-2" FT /host="pea" FT /strain="WA" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="2010" FT /db_xref="taxon:193120" FT CDS join(2. .797,797. .2541) FT /codon_start=1 FT /ribosomal_slippage FT /product="RNA-dependent RNA-polymerase" FT /note="RdRp; 65 kDa protein" FT /protein_id="AEM45990.1" FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE FT SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV FT PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG FT AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNLCHLQGDHVVHQCHCC FT GPVVDPNRRRPGLWAASGGFLVGAVLPRLGEDTSVRFDNLHPSIEVIKAAKPRPTQRMS FT FQIDVVRPLGDFGVHNNSLVNLARGINERVFYTDNARTEPLQPKVPFPSSRELKTFRVT FT PWTMDRVVESYTGSQRTRYANARDSILSNPLSPKDARVKTFVKAEKINFTAKPDPAPRV FT IQPRDPRFNIVLAKYIKPLEPMLYKALGKLYKYPAVAKGFNAVETGEIIAGKWRCFKDP FT VVVGLDASRFDQHVSVEALQFTHAVYRGFIKSREFNNLLQMMYTNRGLGSAKDGFVRYK FT VKGRRMSGDMDTSLGNCVLMVLLTRNLCKILGIPHELFNNGDDCIVFFDRCHLEKFNNA FT VKTYFADLGFKMKVEPPVDVLEKIEFCQTQPIYDGEKWRTVRCISSIGKDCSSVISWDQ FT LEGWWNAIAQSGLAVCGGMPIYTSFYRWLARAGKSGTKCQSHPLWKNEGLNWYRMRIEL FT SHEVNVTPQARRACDAGFGISPPMQVAIEALYDKLPPPSPHHGPPVKAVTQRVFTNYFT FT PESACVSMSTNEDNKSDFAVYGPVPTVMSLCAQC" FT CDS 2. .910 FT /codon_start=1 FT /product="33 kDa protein" FT /protein_id="AEM45989.1" FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE FT SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV FT PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG FT AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNCVTCRETTWYTSAIAV FT DLWLTPTVVDLACGRRAADFW" FT CDS 2762. .3454 FT /codon_start=1 FT /product="long-distance movement protein" FT /note="26 kDa protein" FT /protein_id="AEM45991.1" FT /translation="MTIIINVNNDERKQPEGATGSSVRRGDNKRTRGNKPRSHHPGSRE FT RKGYNHSSPTPKNSKQGQLRTEAVQEHPKHGGTAFRRESGGSVHPSRPRRRARRGGDMA FT PRQHPPPPRERRTKTKTQAERRAQALSVLPTLLDSIGGLDLGPAEVFLHCHRAVRRQLR FT TGVQPIQPVPHVESTHRSSDPQLLEPPTTCSANLQNDGAGRVIGGGIPTAIPEGSDVEQ FT VCHASHYE" FT CDS 2778. .3530 FT /codon_start=1 FT /product="cell-to-cell movement protein" FT /note="27 kDa protein" FT /protein_id="AEM45992.1" FT /translation="MSITTSASNQKELLAALYGEVTIKELEETNLGVITPVRANEKVTI FT TPLLPPKTQSRVSSVLKRFRSTRNTGGLLSVEKVVVVFTPHVPDDVLGEVEIWLHDSIL FT PHLGSVGPRLKLKLSEGPKLLAFYPPYSIALGDSTSGQPRSFSIVTELFEGNFAPGCSP FT FSLFLMWSPRIEAVTHNYLSRPPRALPICRTMVRDALSEVAFQQQYLKGAMSNRYAMPL FT TTSDGQHRAMKGAPSALPPTGVCTQASK" XX SQ Sequence 4197 BP; 937 A; 1159 C; 1199 G; 902 T; 0 other; jf713435 Length: 4197 06-OCT-2011 Type: N Check: 903 .. 1 tatgaactgt gtcgctagga ttaagcggtg gttcacacct gacttcaccc 51 ctggcgaggg tgtgaagtcc agagcacagc tggaaagaga gctggatccc 101 acctgggcgc tcctcgtgtg tcaagagcga gcgcgtcggg atgctgacag 151 tatcgccaat gagtggtacg agggcagcat ggagtgtaac ctcctcatcc 201 cacgggctaa gcccgaggac gttttgggcc cctccgtcgc ccctgagcct 251 gtggctctag tggaggatgc gaccccttcc cacgcgccgg gcgtggatgt 301 ccctgccgag gagtctagta agttagcgga gcttagtcct gctgacctct 351 ccaagttcga ctccctccat cgtcgcatgt tggctgaagc caacccttgc 401 agggaaatag ttctgtgggt gcctcctggc ccaccagcag agcgcgacgt 451 cctgcccagg gcacgtgggg tgataatgat ccccgaagtc cctgcctccg 501 catgcacctt gtccgtgaag gttatggagg ctgtgcggtt ggcacaggaa 551 gtcttggcat cccttgccaa gagggccttg gagagaaggt ccacaccaac 601 ctttaccgcc caggctcagc cagaagctac cctgtcgggg tgcgactacc 651 cgtatcagga gactggtgca gcagccgcgt ggattacgcc tggctgcatt 701 gccatggagc tcagagccaa gtttggcgtc tgcaaacgca cccccgctaa 751 cttagagatg gggagtcgtg tcgcccgcga gctcctgcgg gataactgtg 801 tcacctgcag ggagaccacg tggtacacca gtgccattgc tgtggacctg 851 tggttgaccc caaccgtcgt cgacctggcc tgtgggcggc gagcggcgga 901 tttttggtag gggctgtgct gcctcggctg ggggaagaca ccagtgtgcg 951 gtttgacaac ctgcacccca gcatcgaggt aatcaaggcg gctaagcccc 1001 gcccaaccca gaggatgtcg ttccaaatcg acgttgtgcg tcctcttgga 1051 gattttggtg tgcacaacaa ctcccttgtc aacctagcca ggggaattaa 1101 tgaaagggtg ttctacacgg acaatgctag gacagaaccc ctccagccta 1151 aggttccctt cccttcatca cgggagctaa aaaccttcag agtcaccccc 1201 tggaccatgg atagggttgt ggagagttac acagggtccc agcgcactcg 1251 ctatgctaat gcgcgggaca gcatattatc caaccctctg agtcccaaag 1301 atgcgcgggt taagacgttt gtcaaagctg aaaagataaa tttcacagcc 1351 aaacctgacc ccgcccctcg tgtgatacag cctagggatc cacgattcaa 1401 cattgtcctg gctaaataca tcaaaccttt ggagccaatg ttgtacaaag 1451 cactggggaa actttacaag taccccgcag ttgctaaggg gtttaacgcg 1501 gttgagacgg gggagatcat cgccggcaag tggcggtgct tcaaagatcc 1551 tgtcgtcgtg ggattagacg cttcccgatt tgatcagcat gtatctgtcg 1601 aggcgttgca gttcacccac gcggtgtaca gagggttcat caagtcacgg 1651 gagtttaata acctcctaca gatgatgtac accaaccgtg gcctagggtc 1701 cgctaaggac ggattcgtcc gttacaaggt taaaggtaga cgcatgagcg 1751 gtgatatgga cacctccttg ggcaactgtg tgctcatggt gttgctcacc 1801 aggaatcttt gcaagattct aggcatcccg cacgagctct tcaacaatgg 1851 tgatgattgc atcgtctttt tcgatcgttg tcacttggag aagttcaata 1901 atgctgtcaa gacttatttc gcggacctag ggtttaagat gaaggtggaa 1951 ccgccggttg acgtgttgga gaaaatagag ttctgccaaa cgcagcctat 2001 ctatgacggg gagaagtggc gcaccgtgcg ttgcatctcg agtatcggga 2051 aggattgctc atccgttatt agttgggacc aattggaggg gtggtggaat 2101 gccatcgccc agagtggtct ggctgtgtgt ggcggaatgc cgatatacac 2151 gtcgttctac cggtggctag cacgggccgg caagagtgga accaagtgtc 2201 agtcacaccc cttgtggaaa aacgaggggt tgaattggta caggatgagg 2251 atcgaacttt ctcacgaggt taatgttacc cctcaggcgc gccgggcatg 2301 cgacgcgggt tttggtattt cccccccgat gcaggtcgcc attgaggcgt 2351 tgtatgacaa gttgcctcca ccgtcccccc accatggccc tccggttaag 2401 gctgtaacac agcgagtgtt caccaattat ttcacgccgg aaagcgcctg 2451 tgttagcatg agcacgaatg aagacaacaa atctgacttt gctgtttacg 2501 gtccagtgcc tacagtgatg tctctttgtg ctcagtgcta ggctcttaaa 2551 ttttagcgat ggcgtgactc gatcacaccc tgaattgaca gggtacagat 2601 caagggaagc cggggagtca ccagcccacc ctgaatcgac agggcaaaaa 2651 gggaagccgg gcaccgccca cgtggaatcg accacgtcac ctcttcgcgt 2701 cgactatgtc gtcaacaccc tttcggcccg ccagcctagg acaatggcgg 2751 tagggaaata aatgacgata atcattaatg tcaataacga cgagcgcaag 2801 caaccagaag gagctactgg cagctctgta cggcgaggtg acaataaaag 2851 aactcgagga aacaaacctc ggagtcatca ccccggttcg cgcgaacgaa 2901 aaggttacaa tcactcctct cctaccccca aaaactcaaa gcagggtcag 2951 ctccgtactg aagcggttca ggagcacccg aaacacgggg ggactgcttt 3001 ccgtagagaa agtggtggta gtgttcaccc ctcacgtccc cgacgacgtg 3051 ctaggagagg tggagatatg gctccacgac agcatcctcc cccacctcgg 3101 gagcgtcgga ccaagactaa aactcaagct gagcgaaggg cccaagctct 3151 tagcgttcta cccaccctac tcgatagcat tgggggactc gacctcgggc 3201 cagccgaggt ctttctccat tgtcaccgag ctgttcgaag gcaacttcgc 3251 accggggtgc agcccattca gcctgttcct catgtggagt ccacgcatcg 3301 aagcagtgac ccacaactac ttgagccgcc caccacgtgc tctgccaatt 3351 tgcagaacga tggtgcggga cgcgttatcg gaggtggcat tccaacagca 3401 atacctgaag ggagcgatgt cgaacaggta tgccatgcct ctcactacga 3451 gtgatggcca gcatagagcc atgaaggggg ctcccagtgc ccttccacca 3501 acgggggtgt gtacccaggc ttctaagtga agcttcgctt cccgccggaa 3551 gaccgcggcg gttctgttcc tcccacagga gtacggcaac aacccacctt 3601 gggaaagtgg ggatcccagc attaactcct ttaactaggc gggcgtgttg 3651 gttacaatag gaggggacag ttcgcattga aactgagccc taccacaact 3701 ctcatccaca gggtggttgg gacgcaggtg tttgagggat cgccagccct 3751 caggatagtg agctcccgca gagggataag ctgtccccct gcgacgtggt 3801 agtggaacac gtgggatagg ggatgacctt gtcgaccgtt tgtcggtccc 3851 ctgctcctta gagctggcaa ggcgcccatt ggttctacat ttctaccaaa 3901 gttggtggcg gatgtctcac ccatgcgcgg gataaggccc tctccacctt 3951 cgccgggtaa ggctagagtc agcgctgcat gactataact tgcggccgat 4001 ccagttgcac gactggtggt cccccccagt gcctcggtag tctgccgagt 4051 gggcggtggt cggattccac cacaccctgc cacgaggtgc gtggagactt 4101 ggccagtcta ggctcgtcgt gattagtagc agcgacgtta atcaacccgt 4151 ccgggcatac aataggaccg gttgtgcttc ttcctctcct tcttagc