Sequence of DPV Pea enation mosaic virus-2

Pea enation mosaic virus-2 strain WA RNA-dependent RNA-polymerase, 33 kDa protein, long-distance movement protein, and cell-to-cell movement protein genes, complete cds.

ACC No: JF713435

Dated: 2011-10-06 | Length: 4197 | CRC: -207118122

                
ID   JF713435; SV 1; linear; genomic RNA; STD; VRL; 4197 BP.
XX
AC   JF713435;
XX
DT   21-AUG-2011 (Rel. 109, Created)
DT   06-OCT-2011 (Rel. 110, Last updated, Version 2)
XX
DE   Pea enation mosaic virus-2 strain WA RNA-dependent RNA-polymerase, 33 kDa
DE   protein, long-distance movement protein, and cell-to-cell movement protein
DE   genes, complete cds.
XX
KW   .
XX
OS   Pea enation mosaic virus-2
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN   [1]
RP   1-4197
RX   PUBMED; 21837418.
RA   Vemulapati B., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT   "Genomic characterization of pea enation mosaic virus-2 from the Pacific
RT   Northwestern USA";
RL   Arch. Virol. 156(10):1897-1900(2011).
XX
RN   [2]
RP   1-4197
RA   Vemulapati B.M., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT   ;
RL   Submitted (21-MAR-2011) to the INSDC.
RL   Plant Pathology, Washington State University, 345, Johnson Hall, Pullman,
RL   WA 99164-6430, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4197
FT                   /organism="Pea enation mosaic virus-2"
FT                   /host="pea"
FT                   /strain="WA"
FT                   /mol_type="genomic RNA"
FT                   /country="USA"
FT                   /collection_date="2010"
FT                   /db_xref="taxon:193120"
FT   CDS             join(2. .797,797. .2541)
FT                   /codon_start=1
FT                   /ribosomal_slippage
FT                   /product="RNA-dependent RNA-polymerase"
FT                   /note="RdRp; 65 kDa protein"
FT                   /protein_id="AEM45990.1"
FT                   /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT                   RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE
FT                   SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV
FT                   PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG
FT                   AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNLCHLQGDHVVHQCHCC
FT                   GPVVDPNRRRPGLWAASGGFLVGAVLPRLGEDTSVRFDNLHPSIEVIKAAKPRPTQRMS
FT                   FQIDVVRPLGDFGVHNNSLVNLARGINERVFYTDNARTEPLQPKVPFPSSRELKTFRVT
FT                   PWTMDRVVESYTGSQRTRYANARDSILSNPLSPKDARVKTFVKAEKINFTAKPDPAPRV
FT                   IQPRDPRFNIVLAKYIKPLEPMLYKALGKLYKYPAVAKGFNAVETGEIIAGKWRCFKDP
FT                   VVVGLDASRFDQHVSVEALQFTHAVYRGFIKSREFNNLLQMMYTNRGLGSAKDGFVRYK
FT                   VKGRRMSGDMDTSLGNCVLMVLLTRNLCKILGIPHELFNNGDDCIVFFDRCHLEKFNNA
FT                   VKTYFADLGFKMKVEPPVDVLEKIEFCQTQPIYDGEKWRTVRCISSIGKDCSSVISWDQ
FT                   LEGWWNAIAQSGLAVCGGMPIYTSFYRWLARAGKSGTKCQSHPLWKNEGLNWYRMRIEL
FT                   SHEVNVTPQARRACDAGFGISPPMQVAIEALYDKLPPPSPHHGPPVKAVTQRVFTNYFT
FT                   PESACVSMSTNEDNKSDFAVYGPVPTVMSLCAQC"
FT   CDS             2. .910
FT                   /codon_start=1
FT                   /product="33 kDa protein"
FT                   /protein_id="AEM45989.1"
FT                   /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT                   RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE
FT                   SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV
FT                   PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG
FT                   AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNCVTCRETTWYTSAIAV
FT                   DLWLTPTVVDLACGRRAADFW"
FT   CDS             2762. .3454
FT                   /codon_start=1
FT                   /product="long-distance movement protein"
FT                   /note="26 kDa protein"
FT                   /protein_id="AEM45991.1"
FT                   /translation="MTIIINVNNDERKQPEGATGSSVRRGDNKRTRGNKPRSHHPGSRE
FT                   RKGYNHSSPTPKNSKQGQLRTEAVQEHPKHGGTAFRRESGGSVHPSRPRRRARRGGDMA
FT                   PRQHPPPPRERRTKTKTQAERRAQALSVLPTLLDSIGGLDLGPAEVFLHCHRAVRRQLR
FT                   TGVQPIQPVPHVESTHRSSDPQLLEPPTTCSANLQNDGAGRVIGGGIPTAIPEGSDVEQ
FT                   VCHASHYE"
FT   CDS             2778. .3530
FT                   /codon_start=1
FT                   /product="cell-to-cell movement protein"
FT                   /note="27 kDa protein"
FT                   /protein_id="AEM45992.1"
FT                   /translation="MSITTSASNQKELLAALYGEVTIKELEETNLGVITPVRANEKVTI
FT                   TPLLPPKTQSRVSSVLKRFRSTRNTGGLLSVEKVVVVFTPHVPDDVLGEVEIWLHDSIL
FT                   PHLGSVGPRLKLKLSEGPKLLAFYPPYSIALGDSTSGQPRSFSIVTELFEGNFAPGCSP
FT                   FSLFLMWSPRIEAVTHNYLSRPPRALPICRTMVRDALSEVAFQQQYLKGAMSNRYAMPL
FT                   TTSDGQHRAMKGAPSALPPTGVCTQASK"
XX
SQ   Sequence 4197 BP; 937 A; 1159 C; 1199 G; 902 T; 0 other;

jf713435 Length: 4197  06-OCT-2011  Type: N  Check: 903  ..

       1  tatgaactgt gtcgctagga ttaagcggtg gttcacacct gacttcaccc
      51  ctggcgaggg tgtgaagtcc agagcacagc tggaaagaga gctggatccc
     101  acctgggcgc tcctcgtgtg tcaagagcga gcgcgtcggg atgctgacag
     151  tatcgccaat gagtggtacg agggcagcat ggagtgtaac ctcctcatcc
     201  cacgggctaa gcccgaggac gttttgggcc cctccgtcgc ccctgagcct
     251  gtggctctag tggaggatgc gaccccttcc cacgcgccgg gcgtggatgt
     301  ccctgccgag gagtctagta agttagcgga gcttagtcct gctgacctct
     351  ccaagttcga ctccctccat cgtcgcatgt tggctgaagc caacccttgc
     401  agggaaatag ttctgtgggt gcctcctggc ccaccagcag agcgcgacgt
     451  cctgcccagg gcacgtgggg tgataatgat ccccgaagtc cctgcctccg
     501  catgcacctt gtccgtgaag gttatggagg ctgtgcggtt ggcacaggaa
     551  gtcttggcat cccttgccaa gagggccttg gagagaaggt ccacaccaac
     601  ctttaccgcc caggctcagc cagaagctac cctgtcgggg tgcgactacc
     651  cgtatcagga gactggtgca gcagccgcgt ggattacgcc tggctgcatt
     701  gccatggagc tcagagccaa gtttggcgtc tgcaaacgca cccccgctaa
     751  cttagagatg gggagtcgtg tcgcccgcga gctcctgcgg gataactgtg
     801  tcacctgcag ggagaccacg tggtacacca gtgccattgc tgtggacctg
     851  tggttgaccc caaccgtcgt cgacctggcc tgtgggcggc gagcggcgga
     901  tttttggtag gggctgtgct gcctcggctg ggggaagaca ccagtgtgcg
     951  gtttgacaac ctgcacccca gcatcgaggt aatcaaggcg gctaagcccc
    1001  gcccaaccca gaggatgtcg ttccaaatcg acgttgtgcg tcctcttgga
    1051  gattttggtg tgcacaacaa ctcccttgtc aacctagcca ggggaattaa
    1101  tgaaagggtg ttctacacgg acaatgctag gacagaaccc ctccagccta
    1151  aggttccctt cccttcatca cgggagctaa aaaccttcag agtcaccccc
    1201  tggaccatgg atagggttgt ggagagttac acagggtccc agcgcactcg
    1251  ctatgctaat gcgcgggaca gcatattatc caaccctctg agtcccaaag
    1301  atgcgcgggt taagacgttt gtcaaagctg aaaagataaa tttcacagcc
    1351  aaacctgacc ccgcccctcg tgtgatacag cctagggatc cacgattcaa
    1401  cattgtcctg gctaaataca tcaaaccttt ggagccaatg ttgtacaaag
    1451  cactggggaa actttacaag taccccgcag ttgctaaggg gtttaacgcg
    1501  gttgagacgg gggagatcat cgccggcaag tggcggtgct tcaaagatcc
    1551  tgtcgtcgtg ggattagacg cttcccgatt tgatcagcat gtatctgtcg
    1601  aggcgttgca gttcacccac gcggtgtaca gagggttcat caagtcacgg
    1651  gagtttaata acctcctaca gatgatgtac accaaccgtg gcctagggtc
    1701  cgctaaggac ggattcgtcc gttacaaggt taaaggtaga cgcatgagcg
    1751  gtgatatgga cacctccttg ggcaactgtg tgctcatggt gttgctcacc
    1801  aggaatcttt gcaagattct aggcatcccg cacgagctct tcaacaatgg
    1851  tgatgattgc atcgtctttt tcgatcgttg tcacttggag aagttcaata
    1901  atgctgtcaa gacttatttc gcggacctag ggtttaagat gaaggtggaa
    1951  ccgccggttg acgtgttgga gaaaatagag ttctgccaaa cgcagcctat
    2001  ctatgacggg gagaagtggc gcaccgtgcg ttgcatctcg agtatcggga
    2051  aggattgctc atccgttatt agttgggacc aattggaggg gtggtggaat
    2101  gccatcgccc agagtggtct ggctgtgtgt ggcggaatgc cgatatacac
    2151  gtcgttctac cggtggctag cacgggccgg caagagtgga accaagtgtc
    2201  agtcacaccc cttgtggaaa aacgaggggt tgaattggta caggatgagg
    2251  atcgaacttt ctcacgaggt taatgttacc cctcaggcgc gccgggcatg
    2301  cgacgcgggt tttggtattt cccccccgat gcaggtcgcc attgaggcgt
    2351  tgtatgacaa gttgcctcca ccgtcccccc accatggccc tccggttaag
    2401  gctgtaacac agcgagtgtt caccaattat ttcacgccgg aaagcgcctg
    2451  tgttagcatg agcacgaatg aagacaacaa atctgacttt gctgtttacg
    2501  gtccagtgcc tacagtgatg tctctttgtg ctcagtgcta ggctcttaaa
    2551  ttttagcgat ggcgtgactc gatcacaccc tgaattgaca gggtacagat
    2601  caagggaagc cggggagtca ccagcccacc ctgaatcgac agggcaaaaa
    2651  gggaagccgg gcaccgccca cgtggaatcg accacgtcac ctcttcgcgt
    2701  cgactatgtc gtcaacaccc tttcggcccg ccagcctagg acaatggcgg
    2751  tagggaaata aatgacgata atcattaatg tcaataacga cgagcgcaag
    2801  caaccagaag gagctactgg cagctctgta cggcgaggtg acaataaaag
    2851  aactcgagga aacaaacctc ggagtcatca ccccggttcg cgcgaacgaa
    2901  aaggttacaa tcactcctct cctaccccca aaaactcaaa gcagggtcag
    2951  ctccgtactg aagcggttca ggagcacccg aaacacgggg ggactgcttt
    3001  ccgtagagaa agtggtggta gtgttcaccc ctcacgtccc cgacgacgtg
    3051  ctaggagagg tggagatatg gctccacgac agcatcctcc cccacctcgg
    3101  gagcgtcgga ccaagactaa aactcaagct gagcgaaggg cccaagctct
    3151  tagcgttcta cccaccctac tcgatagcat tgggggactc gacctcgggc
    3201  cagccgaggt ctttctccat tgtcaccgag ctgttcgaag gcaacttcgc
    3251  accggggtgc agcccattca gcctgttcct catgtggagt ccacgcatcg
    3301  aagcagtgac ccacaactac ttgagccgcc caccacgtgc tctgccaatt
    3351  tgcagaacga tggtgcggga cgcgttatcg gaggtggcat tccaacagca
    3401  atacctgaag ggagcgatgt cgaacaggta tgccatgcct ctcactacga
    3451  gtgatggcca gcatagagcc atgaaggggg ctcccagtgc ccttccacca
    3501  acgggggtgt gtacccaggc ttctaagtga agcttcgctt cccgccggaa
    3551  gaccgcggcg gttctgttcc tcccacagga gtacggcaac aacccacctt
    3601  gggaaagtgg ggatcccagc attaactcct ttaactaggc gggcgtgttg
    3651  gttacaatag gaggggacag ttcgcattga aactgagccc taccacaact
    3701  ctcatccaca gggtggttgg gacgcaggtg tttgagggat cgccagccct
    3751  caggatagtg agctcccgca gagggataag ctgtccccct gcgacgtggt
    3801  agtggaacac gtgggatagg ggatgacctt gtcgaccgtt tgtcggtccc
    3851  ctgctcctta gagctggcaa ggcgcccatt ggttctacat ttctaccaaa
    3901  gttggtggcg gatgtctcac ccatgcgcgg gataaggccc tctccacctt
    3951  cgccgggtaa ggctagagtc agcgctgcat gactataact tgcggccgat
    4001  ccagttgcac gactggtggt cccccccagt gcctcggtag tctgccgagt
    4051  gggcggtggt cggattccac cacaccctgc cacgaggtgc gtggagactt
    4101  ggccagtcta ggctcgtcgt gattagtagc agcgacgtta atcaacccgt
    4151  ccgggcatac aataggaccg gttgtgcttc ttcctctcct tcttagc