Sequence of DPV Pea enation mosaic virus-2
Pea enation mosaic virus-2 strain WA RNA-dependent RNA-polymerase, 33 kDa protein, long-distance movement protein, and cell-to-cell movement protein genes, complete cds.
ACC No: JF713435
Dated: 2011-10-06 | Length: 4197 | CRC: -207118122
ID JF713435; SV 1; linear; genomic RNA; STD; VRL; 4197 BP.
XX
AC JF713435;
XX
DT 21-AUG-2011 (Rel. 109, Created)
DT 06-OCT-2011 (Rel. 110, Last updated, Version 2)
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DE Pea enation mosaic virus-2 strain WA RNA-dependent RNA-polymerase, 33 kDa
DE protein, long-distance movement protein, and cell-to-cell movement protein
DE genes, complete cds.
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KW .
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OS Pea enation mosaic virus-2
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
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RN [1]
RP 1-4197
RX PUBMED; 21837418.
RA Vemulapati B., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT "Genomic characterization of pea enation mosaic virus-2 from the Pacific
RT Northwestern USA";
RL Arch. Virol. 156(10):1897-1900(2011).
XX
RN [2]
RP 1-4197
RA Vemulapati B.M., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT ;
RL Submitted (21-MAR-2011) to the INSDC.
RL Plant Pathology, Washington State University, 345, Johnson Hall, Pullman,
RL WA 99164-6430, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4197
FT /organism="Pea enation mosaic virus-2"
FT /host="pea"
FT /strain="WA"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2010"
FT /db_xref="taxon:193120"
FT CDS join(2. .797,797. .2541)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA-polymerase"
FT /note="RdRp; 65 kDa protein"
FT /protein_id="AEM45990.1"
FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE
FT SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV
FT PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG
FT AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNLCHLQGDHVVHQCHCC
FT GPVVDPNRRRPGLWAASGGFLVGAVLPRLGEDTSVRFDNLHPSIEVIKAAKPRPTQRMS
FT FQIDVVRPLGDFGVHNNSLVNLARGINERVFYTDNARTEPLQPKVPFPSSRELKTFRVT
FT PWTMDRVVESYTGSQRTRYANARDSILSNPLSPKDARVKTFVKAEKINFTAKPDPAPRV
FT IQPRDPRFNIVLAKYIKPLEPMLYKALGKLYKYPAVAKGFNAVETGEIIAGKWRCFKDP
FT VVVGLDASRFDQHVSVEALQFTHAVYRGFIKSREFNNLLQMMYTNRGLGSAKDGFVRYK
FT VKGRRMSGDMDTSLGNCVLMVLLTRNLCKILGIPHELFNNGDDCIVFFDRCHLEKFNNA
FT VKTYFADLGFKMKVEPPVDVLEKIEFCQTQPIYDGEKWRTVRCISSIGKDCSSVISWDQ
FT LEGWWNAIAQSGLAVCGGMPIYTSFYRWLARAGKSGTKCQSHPLWKNEGLNWYRMRIEL
FT SHEVNVTPQARRACDAGFGISPPMQVAIEALYDKLPPPSPHHGPPVKAVTQRVFTNYFT
FT PESACVSMSTNEDNKSDFAVYGPVPTVMSLCAQC"
FT CDS 2. .910
FT /codon_start=1
FT /product="33 kDa protein"
FT /protein_id="AEM45989.1"
FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDATPSHAPGVDVPAEE
FT SSKLAELSPADLSKFDSLHRRMLAEANPCREIVLWVPPGPPAERDVLPRARGVIMIPEV
FT PASACTLSVKVMEAVRLAQEVLASLAKRALERRSTPTFTAQAQPEATLSGCDYPYQETG
FT AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNCVTCRETTWYTSAIAV
FT DLWLTPTVVDLACGRRAADFW"
FT CDS 2762. .3454
FT /codon_start=1
FT /product="long-distance movement protein"
FT /note="26 kDa protein"
FT /protein_id="AEM45991.1"
FT /translation="MTIIINVNNDERKQPEGATGSSVRRGDNKRTRGNKPRSHHPGSRE
FT RKGYNHSSPTPKNSKQGQLRTEAVQEHPKHGGTAFRRESGGSVHPSRPRRRARRGGDMA
FT PRQHPPPPRERRTKTKTQAERRAQALSVLPTLLDSIGGLDLGPAEVFLHCHRAVRRQLR
FT TGVQPIQPVPHVESTHRSSDPQLLEPPTTCSANLQNDGAGRVIGGGIPTAIPEGSDVEQ
FT VCHASHYE"
FT CDS 2778. .3530
FT /codon_start=1
FT /product="cell-to-cell movement protein"
FT /note="27 kDa protein"
FT /protein_id="AEM45992.1"
FT /translation="MSITTSASNQKELLAALYGEVTIKELEETNLGVITPVRANEKVTI
FT TPLLPPKTQSRVSSVLKRFRSTRNTGGLLSVEKVVVVFTPHVPDDVLGEVEIWLHDSIL
FT PHLGSVGPRLKLKLSEGPKLLAFYPPYSIALGDSTSGQPRSFSIVTELFEGNFAPGCSP
FT FSLFLMWSPRIEAVTHNYLSRPPRALPICRTMVRDALSEVAFQQQYLKGAMSNRYAMPL
FT TTSDGQHRAMKGAPSALPPTGVCTQASK"
XX
SQ Sequence 4197 BP; 937 A; 1159 C; 1199 G; 902 T; 0 other;
jf713435 Length: 4197 06-OCT-2011 Type: N Check: 903 ..
1 tatgaactgt gtcgctagga ttaagcggtg gttcacacct gacttcaccc
51 ctggcgaggg tgtgaagtcc agagcacagc tggaaagaga gctggatccc
101 acctgggcgc tcctcgtgtg tcaagagcga gcgcgtcggg atgctgacag
151 tatcgccaat gagtggtacg agggcagcat ggagtgtaac ctcctcatcc
201 cacgggctaa gcccgaggac gttttgggcc cctccgtcgc ccctgagcct
251 gtggctctag tggaggatgc gaccccttcc cacgcgccgg gcgtggatgt
301 ccctgccgag gagtctagta agttagcgga gcttagtcct gctgacctct
351 ccaagttcga ctccctccat cgtcgcatgt tggctgaagc caacccttgc
401 agggaaatag ttctgtgggt gcctcctggc ccaccagcag agcgcgacgt
451 cctgcccagg gcacgtgggg tgataatgat ccccgaagtc cctgcctccg
501 catgcacctt gtccgtgaag gttatggagg ctgtgcggtt ggcacaggaa
551 gtcttggcat cccttgccaa gagggccttg gagagaaggt ccacaccaac
601 ctttaccgcc caggctcagc cagaagctac cctgtcgggg tgcgactacc
651 cgtatcagga gactggtgca gcagccgcgt ggattacgcc tggctgcatt
701 gccatggagc tcagagccaa gtttggcgtc tgcaaacgca cccccgctaa
751 cttagagatg gggagtcgtg tcgcccgcga gctcctgcgg gataactgtg
801 tcacctgcag ggagaccacg tggtacacca gtgccattgc tgtggacctg
851 tggttgaccc caaccgtcgt cgacctggcc tgtgggcggc gagcggcgga
901 tttttggtag gggctgtgct gcctcggctg ggggaagaca ccagtgtgcg
951 gtttgacaac ctgcacccca gcatcgaggt aatcaaggcg gctaagcccc
1001 gcccaaccca gaggatgtcg ttccaaatcg acgttgtgcg tcctcttgga
1051 gattttggtg tgcacaacaa ctcccttgtc aacctagcca ggggaattaa
1101 tgaaagggtg ttctacacgg acaatgctag gacagaaccc ctccagccta
1151 aggttccctt cccttcatca cgggagctaa aaaccttcag agtcaccccc
1201 tggaccatgg atagggttgt ggagagttac acagggtccc agcgcactcg
1251 ctatgctaat gcgcgggaca gcatattatc caaccctctg agtcccaaag
1301 atgcgcgggt taagacgttt gtcaaagctg aaaagataaa tttcacagcc
1351 aaacctgacc ccgcccctcg tgtgatacag cctagggatc cacgattcaa
1401 cattgtcctg gctaaataca tcaaaccttt ggagccaatg ttgtacaaag
1451 cactggggaa actttacaag taccccgcag ttgctaaggg gtttaacgcg
1501 gttgagacgg gggagatcat cgccggcaag tggcggtgct tcaaagatcc
1551 tgtcgtcgtg ggattagacg cttcccgatt tgatcagcat gtatctgtcg
1601 aggcgttgca gttcacccac gcggtgtaca gagggttcat caagtcacgg
1651 gagtttaata acctcctaca gatgatgtac accaaccgtg gcctagggtc
1701 cgctaaggac ggattcgtcc gttacaaggt taaaggtaga cgcatgagcg
1751 gtgatatgga cacctccttg ggcaactgtg tgctcatggt gttgctcacc
1801 aggaatcttt gcaagattct aggcatcccg cacgagctct tcaacaatgg
1851 tgatgattgc atcgtctttt tcgatcgttg tcacttggag aagttcaata
1901 atgctgtcaa gacttatttc gcggacctag ggtttaagat gaaggtggaa
1951 ccgccggttg acgtgttgga gaaaatagag ttctgccaaa cgcagcctat
2001 ctatgacggg gagaagtggc gcaccgtgcg ttgcatctcg agtatcggga
2051 aggattgctc atccgttatt agttgggacc aattggaggg gtggtggaat
2101 gccatcgccc agagtggtct ggctgtgtgt ggcggaatgc cgatatacac
2151 gtcgttctac cggtggctag cacgggccgg caagagtgga accaagtgtc
2201 agtcacaccc cttgtggaaa aacgaggggt tgaattggta caggatgagg
2251 atcgaacttt ctcacgaggt taatgttacc cctcaggcgc gccgggcatg
2301 cgacgcgggt tttggtattt cccccccgat gcaggtcgcc attgaggcgt
2351 tgtatgacaa gttgcctcca ccgtcccccc accatggccc tccggttaag
2401 gctgtaacac agcgagtgtt caccaattat ttcacgccgg aaagcgcctg
2451 tgttagcatg agcacgaatg aagacaacaa atctgacttt gctgtttacg
2501 gtccagtgcc tacagtgatg tctctttgtg ctcagtgcta ggctcttaaa
2551 ttttagcgat ggcgtgactc gatcacaccc tgaattgaca gggtacagat
2601 caagggaagc cggggagtca ccagcccacc ctgaatcgac agggcaaaaa
2651 gggaagccgg gcaccgccca cgtggaatcg accacgtcac ctcttcgcgt
2701 cgactatgtc gtcaacaccc tttcggcccg ccagcctagg acaatggcgg
2751 tagggaaata aatgacgata atcattaatg tcaataacga cgagcgcaag
2801 caaccagaag gagctactgg cagctctgta cggcgaggtg acaataaaag
2851 aactcgagga aacaaacctc ggagtcatca ccccggttcg cgcgaacgaa
2901 aaggttacaa tcactcctct cctaccccca aaaactcaaa gcagggtcag
2951 ctccgtactg aagcggttca ggagcacccg aaacacgggg ggactgcttt
3001 ccgtagagaa agtggtggta gtgttcaccc ctcacgtccc cgacgacgtg
3051 ctaggagagg tggagatatg gctccacgac agcatcctcc cccacctcgg
3101 gagcgtcgga ccaagactaa aactcaagct gagcgaaggg cccaagctct
3151 tagcgttcta cccaccctac tcgatagcat tgggggactc gacctcgggc
3201 cagccgaggt ctttctccat tgtcaccgag ctgttcgaag gcaacttcgc
3251 accggggtgc agcccattca gcctgttcct catgtggagt ccacgcatcg
3301 aagcagtgac ccacaactac ttgagccgcc caccacgtgc tctgccaatt
3351 tgcagaacga tggtgcggga cgcgttatcg gaggtggcat tccaacagca
3401 atacctgaag ggagcgatgt cgaacaggta tgccatgcct ctcactacga
3451 gtgatggcca gcatagagcc atgaaggggg ctcccagtgc ccttccacca
3501 acgggggtgt gtacccaggc ttctaagtga agcttcgctt cccgccggaa
3551 gaccgcggcg gttctgttcc tcccacagga gtacggcaac aacccacctt
3601 gggaaagtgg ggatcccagc attaactcct ttaactaggc gggcgtgttg
3651 gttacaatag gaggggacag ttcgcattga aactgagccc taccacaact
3701 ctcatccaca gggtggttgg gacgcaggtg tttgagggat cgccagccct
3751 caggatagtg agctcccgca gagggataag ctgtccccct gcgacgtggt
3801 agtggaacac gtgggatagg ggatgacctt gtcgaccgtt tgtcggtccc
3851 ctgctcctta gagctggcaa ggcgcccatt ggttctacat ttctaccaaa
3901 gttggtggcg gatgtctcac ccatgcgcgg gataaggccc tctccacctt
3951 cgccgggtaa ggctagagtc agcgctgcat gactataact tgcggccgat
4001 ccagttgcac gactggtggt cccccccagt gcctcggtag tctgccgagt
4051 gggcggtggt cggattccac cacaccctgc cacgaggtgc gtggagactt
4101 ggccagtcta ggctcgtcgt gattagtagc agcgacgtta atcaacccgt
4151 ccgggcatac aataggaccg gttgtgcttc ttcctctcct tcttagc