Sequence of DPV Pea enation mosaic virus-2
Pea enation mosaic virus-2 strain ID RNA-dependent RNA-polymerase, 33 kDa protein, long-distance movement protein, and cell-to-cell movement protein genes, complete cds.
ACC No: JF713436
Dated: 2011-10-06 | Length: 4257 | CRC: -439519377
ID JF713436; SV 1; linear; genomic RNA; STD; VRL; 4257 BP.
XX
AC JF713436;
XX
DT 21-AUG-2011 (Rel. 109, Created)
DT 06-OCT-2011 (Rel. 110, Last updated, Version 2)
XX
DE Pea enation mosaic virus-2 strain ID RNA-dependent RNA-polymerase, 33 kDa
DE protein, long-distance movement protein, and cell-to-cell movement protein
DE genes, complete cds.
XX
KW .
XX
OS Pea enation mosaic virus-2
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RP 1-4257
RX PUBMED; 21837418.
RA Vemulapati B., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT "Genomic characterization of pea enation mosaic virus-2 from the Pacific
RT Northwestern USA";
RL Arch. Virol. 156(10):1897-1900(2011).
XX
RN [2]
RP 1-4257
RA Vemulapati B.M., Druffel K.L., Eigenbrode S.D., Karasev A., Pappu H.R.;
RT ;
RL Submitted (21-MAR-2011) to the INSDC.
RL Plant Pathology, Washington State University, 345, Johnson Hall, Pullman,
RL WA 99164-6430, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .4257
FT /organism="Pea enation mosaic virus-2"
FT /host="pea"
FT /strain="ID"
FT /mol_type="genomic RNA"
FT /country="USA"
FT /collection_date="2010"
FT /db_xref="taxon:193120"
FT CDS join(21. .816,816. .2569)
FT /codon_start=1
FT /ribosomal_slippage
FT /product="RNA-dependent RNA-polymerase"
FT /note="RdRp; 65 kDa protein"
FT /protein_id="AEM45994.1"
FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDVTHSHAPGVDAPAEE
FT SSVVAEIDSVDPAEFDSLTRHLLAESNPCREMVLWVPTGLPAERDVLPRARGVIMIPEV
FT PASSYTLSVKVAEAVRLAQEVLASLAKRALEKRSPPTLTAQAQPEALLSGCDYPYQETG
FT AAAAWITPGCIAMELRAKFGICKRTPANLEMGSRVARELLRDNLCHLQGDHVVHQCHCC
FT GPVVDPNRRRPGLWSAGGGFLVGAVLPRLGEDTSVRFDNLHPSIEVIKAAKPRPTQRMS
FT YQIDVVRPLGDFGVHNNSLVNLARGINERVFYTDNARTEPLKPKVPFPSSRELRELKTF
FT RVTPWTMDRVVESYTGSQRTRYANARDSILSNPLSPKDARVKTFVKAEKINFTAKPDPA
FT PRVIQPRDPRFNIVLAKYIKPLEPMLYKALGRLYKYPAVAKGFNAVETGEIIAGKWRCF
FT KDPVVVGLDASRFDQHVSVEALQFTHAVYRGFIKSREFNNLLQMMYTNRGLGSAKDGFV
FT RYKVKGRRMSGDMDTSLGNCVLMVLLTRNLCKILGIPHELFNNGDDCIVFFDRCHLEKF
FT NNAVKPYFADLGFKMKVEPPVDVLEKIEFCQTQPIYDGEKWRTVRCISSIGKDCSSVIS
FT WDQLEGWWNAIAQSGLAVCGGMPIYTSFYRWLARAGKSGTKCQSHPLWKNEGLNWYRMG
FT MDLSHEVNVTPQARLSFFAGFGISPPMQVAIEALYDKLPPPSPHYGSPVKVVTQRVFTN
FT YFTPETACASMSTDGDNRSDFAVYGSAPTVMSLCAQC"
FT CDS 21. .929
FT /codon_start=1
FT /product="33 kDa protein"
FT /protein_id="AEM45993.1"
FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT RDADSIANEWYEGSMECNLLIPRAKPEDVLGPSVAPEPVALVEDVTHSHAPGVDAPAEE
FT SSVVAEIDSVDPAEFDSLTRHLLAESNPCREMVLWVPTGLPAERDVLPRARGVIMIPEV
FT PASSYTLSVKVAEAVRLAQEVLASLAKRALEKRSPPTLTAQAQPEALLSGCDYPYQETG
FT AAAAWITPGCIAMELRAKFGICKRTPANLEMGSRVARELLRDNCVTCRETTWYTSAIAV
FT DLWLTPTVVDLACGRRAADFW"
FT CDS 2787. .3479
FT /codon_start=1
FT /product="long-distance movement protein"
FT /note="26 kDA protein"
FT /protein_id="AEM45995.1"
FT /translation="MTIIINVNNDERKQPEGATGSSVRRGDNKRTRGNKPRSHHPGSRE
FT RKGYTHPSPTPKNPRQGQLRSEAVQEHPKHGGTAFRRESGSSVHPSRPRRRARRGGDMA
FT PRQHPPPPRERGTKTETQAERRAQALSVLPTLLNCIGGLNLGSAEVLLHCHRAVRRQLR
FT TGVQPIQPVSHVESSYRSSDPQLLESSTTCSADLQNDGAGRAIGGGIPTAISEGSDVEQ
FT VCHASHYG"
FT CDS 2803. .3555
FT /codon_start=1
FT /product="cell-to-cell movement protein"
FT /note="27 kDa protein"
FT /protein_id="AEM45996.1"
FT /translation="MSTTTSASNQKELLAALYGEVTIKELEETNLGVITPVRANEKVTL
FT TPLLPPKTQGRVSSVLKRFRSTRNTGGLLSVEKVVVVFTPHVPDDVLGEVEIWLHDSIL
FT PHLGSVGPRLKLKLSDGPKLLAFYPPYSIALGDSISGQPRSFSIATELFEGNFAPGCSP
FT FSLFLMWSPRIEAVTHNYLSRPPRALPICRTMVRDALSEVASQQQYLKGAMSNRYAMPL
FT TTGDGQHRAMKGAPSTLPPTGVCTQASK"
XX
SQ Sequence 4257 BP; 941 A; 1154 C; 1227 G; 935 T; 0 other;
jf713436 Length: 4257 06-OCT-2011 Type: N Check: 9582 ..
1 gggtatttat agagatcagt atgaactgtg ttgctaggat caagcggtgg
51 ttcacacctg acttcacccc tggcgagggt gtgaagtcca gagcacagct
101 ggaaagagag ctggatccca cctgggcgct cctcgtgtgt caagagcgag
151 cgcgtcggga tgctgacagt atcgccaatg agtggtacga gggcagcatg
201 gagtgtaacc tcctcatccc tcgggctaag cccgaggacg ttttgggtcc
251 ctccgtcgcc cctgagcctg tggctctagt ggaggatgtt acccattccc
301 acgcgccggg cgtggatgcc cctgccgagg agtccagtgt tgtggcggag
351 attgattccg ttgatcccgc tgagttcgac tccctcactc gtcacctgtt
401 ggctgagtct aacccttgca gggagatggt tctgtgggtg cctactggcc
451 taccagcaga acgtgacgtc ttgcccaggg cacgtggggt gataatgatc
501 cccgaagtcc ctgcctcttc atacaccttg tccgtgaagg tggcagaggc
551 tgtgcggttg gcacaggaag tcttggcatc ccttgccaag agggccttag
601 agaaaaggtc cccaccaacc cttaccgccc aggcccagcc agaggctctc
651 ctgtcggggt gtgactaccc atatcaggag actggagcag cagccgcatg
701 gataacgcct ggctgcattg ccatggagct cagagccaaa tttggcatct
751 gtaaacgaac ccccgcaaat ctagagatgg ggagtcgtgt cgcccgcgag
801 ctcctgcggg ataactgtgt cacctgcagg gagaccacgt ggtacaccag
851 tgccattgct gtggacctgt ggttgacccc aaccgtcgtc gacctggctt
901 gtggtcggcg ggcggcggat ttttggtagg ggctgtgctg cctcggctgg
951 gggaagacac tagtgtgagg tttgataacc tgcaccccag catcgaggta
1001 atcaaggcgg ctaagccccg cccgacccag aggatgtcgt atcaaatcga
1051 cgttgtgcgt cctcttggag attttggtgt gcacaacaac tcccttgtca
1101 acctagccag gggaatcaat gaaagggtgt tctacacgga caatgctagg
1151 acagaacccc taaagcctaa ggttcccttc ccgtcatcac gggagctgag
1201 ggaactaaaa accttcagag ttaccccttg gacaatggat agggttgtgg
1251 agagttacac tgggtcccag cgcacgcgtt atgctaacgc acgggacagc
1301 atattatcca accccctgag tcctaaagat gcccgggtca agacgtttgt
1351 caaagctgaa aagataaact tcacagccaa acctgacccc gcccctcgtg
1401 tgatacagcc tagggatcca cgattcaaca ttgtcctggc taagtacatc
1451 aagccattgg agccgatgtt gtacaaagca ttggggagac tttacaagta
1501 tcccgcagtt gctaaggggt tcaacgcggt tgaaacgggg gagatcatcg
1551 ctggtaagtg gcggtgcttc aaagatcccg tcgtcgtggg actagacgct
1601 tcccggtttg atcagcatgt atctgtcgag gcgttacagt ttacccacgc
1651 ggtgtacaga gggtttatca agtcccggga gtttaacaac ctcctgcaga
1701 tgatgtacac caaccgtggt ctagggtctg ccaaggacgg attcgtccgg
1751 tacaaggtca agggtagacg catgagcggt gatatggaca cctccttggg
1801 caattgtgtg ctcatggtgt tgctcaccag gaatctctgt aagattctag
1851 gcatcccgca tgagctcttc aacaatggtg atgattgcat cgtctttttc
1901 gatcgctgcc acttggagaa gttcaacaat gctgtcaagc cctattttgc
1951 agacctgggg tttaagatga aggtggagcc gccggttgac gtgctagaga
2001 aaatagagtt ctgccaaacg cagcctatat atgacggaga gaagtggcgc
2051 accgtgcgct gcatttcgag catcgggaaa gattgctcat ccgtcatcag
2101 ctgggaccaa ttggaggggt ggtggaatgc catcgcccag agtggtctgg
2151 ctgtgtgtgg cgggatgccg atatacacgt cattctaccg atggctagcg
2201 cgggctggta aaagtgggac caagtgccag tcacacccct tatggaagaa
2251 cgaggggttg aattggtaca ggatgggaat ggacctttct catgaggtta
2301 atgtcacccc tcaggcgcgc ctgtctttct tcgcgggttt tggtatctcc
2351 cccccgatgc aggtcgctat tgaggcgttg tatgacaagc tgcctccgcc
2401 gtccccccac tatggttctc cggttaaggt tgtaacacag cgagtgttca
2451 ccaattattt cacgccggag accgcctgtg ctagtatgag tacagatgga
2501 gacaacagat ctgactttgc tgtgtacggc tctgcgccta cagtgatgtc
2551 tctctgtgct cagtgttagg cttttaaaag cgatggcgtg acacggtcac
2601 accctgaatt gacaggggat agatcaaggg aagccgggga gtcaccaacc
2651 ccaccctgaa tcgacagggc aaaaagggaa gccgggcacc gcccacgtgg
2701 aattgaccac gttacctttt cgcgtcgact gtgtcgtcaa cacccttttg
2751 gcccgccagc ctaggacaat ggcggatggg taatatatga cgataatcat
2801 caatgtcaac aacgacgagc gcaagcaacc agaaggagct actggcagct
2851 ctgtacggcg aggtgacaat aaaagaactc gaggaaacaa acctcggagt
2901 catcaccccg gttcgcgcga acgaaaaggt tacactcacc cctctcctac
2951 ccccaaaaac ccaaggcagg gtcagctccg ttctgaagcg gttcaggagc
3001 acccgaaaca cggggggact gctttccgta gagaaagtgg tagtagtgtt
3051 cacccctcac gtcccagacg acgtgctagg agaggtggag atatggctcc
3101 acgacagcat cctcccccac ctcgggagcg tgggaccaag actgaaactc
3151 aagctgagcg acgggcccaa gctcttagcg ttttacccac cctactcaat
3201 tgcattgggg gactcaatct cgggtcagcc gaggtccttc tccattgcca
3251 ccgagctgtt cgaaggcaac ttcgcaccgg ggtgcagccc attcagcctg
3301 tttctcatgt ggagtcctcg tatcgaagca gtgacccaca actacttgag
3351 tcgtccacca cgtgctctgc cgatctgcag aacgatggtg cgggacgcgc
3401 tatcggaggt ggcatcccaa cagcaatatc tgaagggagc gatgtcgaac
3451 aggtatgcca tgcctctcac tacgggtgat ggccagcata gagccatgaa
3501 gggggctccc agtacccttc caccaacggg ggtgtgtacc caggcttcta
3551 agtgaggctt cgcttcccgc cggaagtccg cggcggttct gttcctccca
3601 caggagtacg gcagcaaccc accttgggac agtggggacc ccagcactaa
3651 cttctttaac taggcgggcg tgttggttac agtaggaggg gacagtgtgc
3701 accaaactga gccccaccac aactcccaac cacagggtgg ttgagacgca
3751 ggtgtcagag ggatcgccag ccctcaggat agtgagctcc cgcagaggga
3801 taagctgtct ccctgcgacg tagtggtaga acttgtggga taggggatga
3851 tcttgtcgac cgtttctcgg tcccctgctc cgttgagctg gcaaggcgcc
3901 tataggttct acgttgctac taaagttggt ggtggatgtc tcgcccaaaa
3951 agatcataaa tgcgcgggat aaggccctct ccaccttcgc cgggtaaggc
4001 tagagtcagc gctgcatgac tataacttgc ggccgatcca gttgcacgac
4051 tggtggtccc cctcagtgcc tcggctgtct gccgagtggg cggcggtcgg
4101 attccgccac accctgccac gaggtgcgtg gagacttggc cagtctaggc
4151 tcgtcgtaat tagttgcagc gacgttaatc aatccgtccg ggcatacaat
4201 aggaccggtt gtgcttcttt ctcttttctt agccaggtgg ttacctccct
4251 ggcgccc