Sequence of DPV Papaya ringspot virus

Papaya ringspot virus W from Israel HC-PRO protein gene, partial cds.

ACC No: JF737858

Dated: 2011-05-08 | Length: 1371 | CRC: -46345334

                
ID   JF737858; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   JF737858;
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DT   08-MAY-2011 (Rel. 108, Created)
DT   08-MAY-2011 (Rel. 108, Last updated, Version 1)
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DE   Papaya ringspot virus W from Israel HC-PRO protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus W
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1371
RA   Gal-On A., Leibman D., Haronsky E.;
RT   ;
RL   Submitted (27-MAR-2011) to the EMBL/GenBank/DDBJ databases.
RL   Department of Plant Pathology, Volcani Center-ARO, P.O. Box 6, Bet-Dagan
RL   50250, Israel
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1371
FT                   /organism="Papaya ringspot virus W"
FT                   /host="squash"
FT                   /mol_type="genomic RNA"
FT                   /country="Israel"
FT                   /collection_date="2006"
FT                   /db_xref="taxon:12207"
FT   CDS             <1. .>1371
FT                   /codon_start=1
FT                   /product="HC-PRO protein"
FT                   /protein_id="AED88251.1"
FT                   /translation="NDVAEKSWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATII
FT                   LFPCHKITCNTCMSKVKGRVIDEVGEDLNCELERLRETLSAYGGSFGHVSTLLDQLNRV
FT                   LNARNMNDGAFKEIAKKIDEKKESPWTHMTAINNTLIKGSLAIGYEFERASDSLREIVR
FT                   WHLKRTESIKAGSVESFRNKRSGKAHFNPALTCDNQLDKNGNFLWGERQYHAKRFFANY
FT                   FEKIDHSKGYEYYSQRQNPNGIRKIAIGNLVFSTNLEGFRQQMVEHHIDQGPITRECIA
FT                   LRNNNYVHVCSCVTLDDGTPATSELKTPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKK
FT                   GYCYMNIFLAMLINIPENEGEDFTKRVRDLVGSKLGEWPTMLDVATCANQLIIFHPDAA
FT                   NAELPRILVDHRQKTMHVIDSFGSVDSGYHILKANTVNQLIQFAREPLDSEMKHYIVG"
XX
SQ   Sequence 1371 BP; 381 A; 307 C; 375 G; 308 T; 0 other;

jf737858 Length: 1371  08-MAY-2011  Type: N  Check: 1537  ..

       1  aacgatgtgg cggaaaaaag ctggctgggc tttaaccgtg cgtttctgcg
      51  tcatcgtaaa ccgaccgatc atacctgcac cagcgatatg gatgtgacca
     101  tgtgcggcga agtggcggcg ctggcgacca ttattctgtt tccgtgccat
     151  aaaattacct gcaacacctg catgagcaaa gtgaaaggcc gtgtgattga
     201  tgaagtgggc gaagatctga actgcgaact ggaacgtctg cgtgaaaccc
     251  tgagcgcgta tggcggcagc tttggccatg tgagcaccct gctggatcag
     301  ctgaaccgtg tgctgaacgc gcgtaacatg aacgatggcg cgtttaaaga
     351  aattgcgaaa aaaattgatg aaaaaaaaga aagcccgtgg acccatatga
     401  ccgcgattaa caacaccctg attaaaggca gcctggcgat tggctatgaa
     451  tttgaacgtg cgagcgatag cctgcgtgaa attgtgcgtt ggcatctgaa
     501  acgtaccgaa agcattaaag cgggcagcgt ggaaagcttt cgtaacaaac
     551  gtagcggcaa agcgcatttt aacccggcgc tgacctgcga taaccagctg
     601  gataaaaacg gcaactttct gtggggcgaa cgtcagtatc atgcgaaacg
     651  tttttttgcg aactattttg aaaaaattga tcatagcaaa ggctatgaat
     701  attatagcca gcgtcagaac ccgaacggca ttcgtaaaat tgcgattggc
     751  aacctggtgt ttagcaccaa cctggaaggc tttcgtcagc agatggtgga
     801  acatcatatt gatcagggcc cgattacccg tgaatgcatt gcgctgcgta
     851  acaacaacta tgtgcatgtg tgcagctgcg tgaccctgga tgatggcacc
     901  ccggcgacca gcgaactgaa aaccccgacc aaaaaccata ttgtgctggg
     951  caacagcggc gatccgaaat atgtggatct gccgaccctg gaaagcgata
    1001  gcatgtatat tgcgaaaaaa ggctattgct atatgaacat ttttctggcg
    1051  atgctgatta acattccgga aaacgaaggc gaagatttta ccaaacgtgt
    1101  gcgtgatctg gtgggcagca aactgggcga atggccgacc atgctggatg
    1151  tggcgacctg cgcgaaccag ctgattattt ttcatccgga tgcggcgaac
    1201  gcggaactgc cgcgtattct ggtggatcat cgtcagaaaa ccatgcatgt
    1251  gattgatagc tttggcagcg tggatagcgg ctatcatatt ctgaaagcga
    1301  acaccgtgaa ccagctgatt cagtttgcgc gtgaaccgct ggatagcgaa
    1351  atgaaacatt atattgtggg c