Sequence of DPV Southern rice black-streaked dwarf virus

Southern rice black-streaked dwarf virus isolate ZJwuyi6 major capsid protein gene, complete cds.

ACC No: JF803469

Dated: 2011-09-27 | Length: 1674 | CRC: -770077063

                
ID   JF803469; SV 1; linear; genomic RNA; STD; VRL; 1674 BP.
XX
AC   JF803469;
XX
DT   27-SEP-2011 (Rel. 110, Created)
DT   27-SEP-2011 (Rel. 110, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate ZJwuyi6 major capsid
DE   protein gene, complete cds.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; dsRNA viruses; Reoviridae; Spinareovirinae; Fijivirus;
OC   unclassified Fijivirus.
XX
RN   [1]
RP   1-1674
RA   Gao R.Z., Cheng Z.B., Zhou Y.J.;
RT   ;
RL   Submitted (13-APR-2011) to the INSDC.
RL   Institute of Plant Protection, Jiangsu Academic of Agricultural Sciences,
RL   No. 50 Zhongling Road, Nanjing, Jiangsu 210014, China
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1674
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S10"
FT                   /host="rice"
FT                   /isolate="ZJwuyi6"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Sep-2009"
FT                   /db_xref="taxon:519497"
FT   CDS             1. .1674
FT                   /codon_start=1
FT                   /product="major capsid protein"
FT                   /protein_id="AEP02600.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNDRPTITLLSHFNSLFHE
FT                   SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ
FT                   PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELGALDADK
FT                   SLLEQTWSGVSSFIETWKVKTKVKDEDQDEYELAGLSALRKGVDGNSVSSPYNDKKFIE
FT                   WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI
FT                   TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID
FT                   DIIHFIGIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKADRDRLIKKATTANSSTSNSNSEHGQKIVLNKVTR"
XX
SQ   Sequence 1674 BP; 584 A; 292 C; 289 G; 509 T; 0 other;

jf803469 Length: 1674  27-SEP-2011  Type: N  Check: 6487  ..

       1  atggctgaca taagacttga catagcgccc gatcttatcc ataatggtgt
      51  gcctcaaaga ctttcagata cgataattct aaacgaccga ccaacaatca
     101  cacttctgtc tcacttcaac tctctttttc acgaatcaaa cattgtcaaa
     151  tcaccccaca tcgcgtcatc tcaaactact gttaatttat acattcgtaa
     201  gcatttattg actcgacttc atgatagatt acaaactgtc gaaaccagta
     251  ctctaccaaa cattactcaa cttaaagaac atattcaaag ttatttccgt
     301  aatgaacatc aacctatttt ccaaaccctg actaacaata atcttagtga
     351  tgaattttta ggtgtaacta cttttggttt aagtctattc gcaacttcaa
     401  agttggatgc agaacaaata gaacgagtac aaattgagac cctaactgaa
     451  ggaaacgtta cacttaaacc attctccgct gacggtttag aagtaatttt
     501  agatgatagt tacatcggaa taattggaaa aatttctggt ttagaagtac
     551  ataaattgct cgataaatgt tgtcgtgaag ttcctgctca aatgggaata
     601  ttaactgacg aagttaaact tttaatacgt tccggaaaat taagaattga
     651  cggtggatac gatttcaatt gtcctgctag tacaacagac gtgacgcact
     701  atggcggtta tgaccaatat tcgagacaaa tgtttgaaaa attgaatttg
     751  ttctttaata tcagtttgag cattattcct gtttctgcac ttaaaactat
     801  tcatgtattt gagaaagaac taggtgcttt agatgctgac aaatcacttt
     851  tagaacaaac atggagcgga gtctcctcat ttattgaaac ctggaaagta
     901  aaaactaaag ttaaagatga agatcaagat gagtacgaac tagctggact
     951  gtctgcactt agaaaaggag tcgatggtaa ttctgtatct agcccttaca
    1001  atgataagaa attcatcgaa tggtattcta agacgtttgc taaaatagag
    1051  aaaggttcat cgttgcgtaa gactgaaatt gaagacaaaa atacgtccgg
    1101  tacttcaaac ataacaaagc aagttaaaat tcattttcct gttcagtatt
    1151  tcgatgaagt caaatctaac ggtcatgaaa aaagtgttac tgtaatcact
    1201  aataaaggtg aaatgtcatt ggaatcttac cgaaagatag gtgaaatatt
    1251  aagtgcgatc tggaaacgtg gtaaggcatt agctgctccc tgcatcgatt
    1301  acatcaaact tggtgtcgaa aaagcttatc acttagctcc tgtaatcatg
    1351  aagaaatata atttaactat tgatgatata attcatttta ttggaattgg
    1401  tccttcatac ttagcgaaat tggataaaat tgatgattgg tccttaattg
    1451  caaaattgat tattaccagt gttttgccaa acatcattca agcggtgtat
    1501  aaaacagatc ctagcaataa tgttatgaat tcagtcatta ttagcagagc
    1551  taacaattta ttgaaggcgg atcgcgatcg tttaattaag aaagctacca
    1601  ctgcaaattc atctaccagt aattcaaatt cagaacatgg tcaaaagatt
    1651  gtgttaaata aagtcaccag atga