Sequence of DPV Cowpea aphid-borne mosaic virus

Cowpea aphid-borne mosaic virus isolate LMN4 polyprotein gene, partial cds.

ACC No: JF833420

Dated: 2011-11-14 | Length: 1188 | CRC: -2127857811

                
ID   JF833420; SV 1; linear; genomic RNA; STD; VRL; 1188 BP.
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AC   JF833420;
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DT   14-NOV-2011 (Rel. 110, Created)
DT   14-NOV-2011 (Rel. 110, Last updated, Version 1)
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DE   Cowpea aphid-borne mosaic virus isolate LMN4 polyprotein gene, partial cds.
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KW   .
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OS   Cowpea aphid-borne mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1188
RA   Nicolini C., Rabelo Filho F.A.C., Resende R.O., Andrade G.P.,
RA   Kitajima E.W., Pio-Ribeiro G., Nagata T.;
RT   "Possible host adaptation as an evolution factor of Cowpea aphid-borne
RT   mosaic virus deduced by coat protein gene analysis";
RL   Unpublished.
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RN   [2]
RP   1-1188
RA   Nicolini C., Rabelo Filho F.A.C., Resende R.O., Andrade G.P.,
RA   Kitajima E.W., Pio-Ribeiro G., Nagata T.;
RT   ;
RL   Submitted (25-APR-2011) to the INSDC.
RL   Departamento de Agronomia, Universidade Federal Rural de Pernambuco, Av.
RL   Dom Manoel de Medeiros, s/n, Dois Irmaos, Recife, Pernambuco 52171-030,
RL   Brazil
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1188
FT                   /organism="Cowpea aphid-borne mosaic virus"
FT                   /host="Cassia hoffmannseggii"
FT                   /isolate="LMN4"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="2009"
FT                   /note="acronym: CABMV"
FT                   /db_xref="taxon:12199"
FT   CDS             <1. .1113
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /protein_id="AET21571.1"
FT                   /translation="RSKEMLHRTEAVCAAMIEAWGYPELLQEIRRYYLWLLQRDEFKEL
FT                   VNLGKAPYIAETALKKLYTDEQASEKELQRYLQDIHSFYDDCELEDVVLQSDERQKEMD
FT                   AGKEKDKAKEAREQSMQQKQARSKEVKETERDVSTSSSGQLVPRLQKISKKMNMPMVAG
FT                   RVLLNLDHLIEYKPAQIDLYNTRASKTQLSKWFEAIKEEYELDDDKMGVIMNGFMVWCI
FT                   ENGTSPDVNGVWTMMDGDEQVEFPLKPIVENAKPTLRQIMHHFSDAAEAYIEMRNSEGF
FT                   YMPRYGLLRNLRDKSLARYAFDFYEVTSKTSERAREAIAQMKAAALANVNTRMFGLDGN
FT                   VATTSENTERHTATDVNQNMHSLLGMTHGQ"
FT   mat_peptide     286. .1110
FT                   /product="coat protein"
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SQ   Sequence 1188 BP; 389 A; 218 C; 304 G; 277 T; 0 other;

jf833420 Length: 1188  14-NOV-2011  Type: N  Check: 496  ..

       1  cgcagcaagg aaatgctgca cagaacagaa gctgtgtgtg cagcaatgat
      51  cgaggcatgg ggttaccccg aactgttgca agagattagg agatactacc
     101  tctggttgtt acaaagagat gaattcaaag agttggttaa tcttggaaag
     151  gccccgtata tcgcggaaac tgctctcaag aagttatata ctgacgaaca
     201  ggcctcagaa aaggaattgc agaggtatct tcaagatatc cattctttct
     251  atgatgactg cgagttggaa gatgttgtgc ttcagtccga tgaaaggcaa
     301  aaggaaatgg atgcaggcaa ggaaaaggat aaggctaaag aagccagaga
     351  gcagtcaatg cagcaaaagc aagcgaggag caaagaagtc aaggaaacag
     401  agagggacgt ttcaactagc tcttcaggac agctagttcc acgtctacag
     451  aagattagca aaaagatgaa tatgcccatg gttgctggta gagtacttct
     501  caatttggac catttgatag aatacaagcc agcacaaatt gatttatata
     551  acaccagagc atcaaagaca cagcttagta aatggtttga ggctatcaaa
     601  gaagaatacg agctggatga tgacaagatg ggtgttatca tgaatgggtt
     651  catggtctgg tgcattgaaa atggaacttc acctgatgta aatggagtgt
     701  ggactatgat ggatggggat gagcaagtgg aatttccact caaacccatt
     751  gtggaaaatg caaaacccac actcagacaa attatgcacc acttctcaga
     801  cgcagctgaa gcgtatattg agatgagaaa ttctgaaggg ttctacatgc
     851  ccaggtacgg actgctgagg aatttaagag ataagagctt agcaaggtat
     901  gctttcgatt tctatgaagt tacatctaag acttctgaaa gagcaaggga
     951  agcaatagca caaatgaagg ctgcagctct cgccaacgtt aacaccagga
    1001  tgtttggcct ggatgggaac gtggcaacaa ctagtgagaa cactgagagg
    1051  cacactgcca ctgatgttaa tcagaacatg cattccctct tagggatgac
    1101  gcatgggcag taaaggcttg ggttctgccc tcgccacagt tatcgtttca
    1151  caatcttagc taatggttgg ttttagtaaa tagtacgc