Sequence of DPV Cowpea aphid-borne mosaic virus

Cowpea aphid-borne mosaic virus isolate PPL1 polyprotein gene, partial cds.

ACC No: JF833423

Dated: 2011-11-14 | Length: 1228 | CRC: -1595981430

                
ID   JF833423; SV 1; linear; genomic RNA; STD; VRL; 1228 BP.
XX
AC   JF833423;
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DT   14-NOV-2011 (Rel. 110, Created)
DT   14-NOV-2011 (Rel. 110, Last updated, Version 1)
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DE   Cowpea aphid-borne mosaic virus isolate PPL1 polyprotein gene, partial cds.
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KW   .
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OS   Cowpea aphid-borne mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1228
RA   Nicolini C., Rabelo Filho F.A.C., Resende R.O., Andrade G.P.,
RA   Kitajima E.W., Pio-Ribeiro G., Nagata T.;
RT   "Possible host adaptation as an evolution factor of Cowpea aphid-borne
RT   mosaic virus deduced by coat protein gene analysis";
RL   Unpublished.
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RN   [2]
RP   1-1228
RA   Nicolini C., Rabelo Filho F.A.C., Resende R.O., Andrade G.P.,
RA   Kitajima E.W., Pio-Ribeiro G., Nagata T.;
RT   ;
RL   Submitted (25-APR-2011) to the INSDC.
RL   Departamento de Agronomia, Universidade Federal Rural de Pernambuco, Av.
RL   Dom Manoel de Medeiros, s/n, Dois Irmaos, Recife, Pernambuco 52171-030,
RL   Brazil
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1228
FT                   /organism="Cowpea aphid-borne mosaic virus"
FT                   /host="Cassia hoffmannseggii"
FT                   /isolate="PPL1"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil"
FT                   /collection_date="2009"
FT                   /note="acronym: CABMV"
FT                   /db_xref="taxon:12199"
FT   CDS             <1. .1153
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /protein_id="AET21574.1"
FT                   /translation="LEQERIVSILEWDRSKEMLHRTEAVCAAMIEAWGYPELLQEIRKY
FT                   YLWLLQRDEFKELVNLGKAPYIAETALKKLYTDEQASEKELQRYLQDILSFYDDCELED
FT                   VVLQSDERQKEMDAGKDRDKAKEAREQSMQQRQVRSKEAKETERDVSTSSSGQLVPRLQ
FT                   KISKKMNMPMVAGRVLLNLDHLIEYKPAQIDLYNTRASKTQLSKWFEAIKEEYELDDDK
FT                   MGVIMNGFMVWCIENGTSPDVNGVWTMMDGDEQVEFPLKPIVENAKPTLRQIMHHFSDA
FT                   AEAYIEMRNSEGFYMPRYGLLRNLRDKSLARYAFDFYEVTSKTSERAREAIAQMKAAAL
FT                   ANVNTRMFGLDGNVATTSENTERHTATDVNQNMHSLLGMTHGQ"
FT   mat_peptide     326. .1150
FT                   /product="coat protein"
XX
SQ   Sequence 1228 BP; 406 A; 226 C; 311 G; 285 T; 0 other;

jf833423 Length: 1228  14-NOV-2011  Type: N  Check: 7289  ..

       1  gctagagcaa gaaagaatcg tgtcaattct agagtgggat cgcagcaagg
      51  aaatgctgca cagaacagaa gccgtatgtg cagcaatgat tgaggcatgg
     101  ggttaccccg aactgttgca agaaattagg aaatactatc tctggttgtt
     151  acaaagagat gagttcaaag agttggttaa tcttggaaag gccccgtata
     201  tcgcggaaac tgctctcaag aagctatata ctgatgaaca ggcctcagaa
     251  aaggaattgc agagatatct tcaagatatc ctttccttct atgatgactg
     301  tgaattagaa gatgttgtgc tccagtccga tgaaaggcaa aaagaaatgg
     351  atgcaggcaa ggacagagat aaggctaaag aagccagaga gcagtcaatg
     401  caacaaaggc aagtgaggag caaagaagcc aaggaaacag agagggacgt
     451  ttcaactagt tcctcaggac aactagttcc acgtctacaa aagattagca
     501  aaaagatgaa tatgcccatg gttgctggta gagtacttct caatttggac
     551  catctgatag aatacaagcc agcacagatt gatctatata acaccagagc
     601  atcaaagaca cagcttagta aatggtttga ggctattaaa gaagaatacg
     651  agctggatga tgacaagatg ggtgttatca tgaatgggtt catggtctgg
     701  tgcattgaaa atggaacttc acctgatgta aatggagtgt ggactatgat
     751  ggatggggat gagcaagtgg aatttccgct caaacccatt gtggaaaatg
     801  caaaacccac actcagacaa attatgcacc acttctcaga cgcagctgaa
     851  gcgtatattg agatgagaaa ttctgaaggg ttctacatgc ccaggtacgg
     901  actgctgagg aatttaagag acaagagctt agcaaggtat gcttttgact
     951  tctatgaagt tacatctaag acttctgaaa gagcaaggga agcaatagca
    1001  caaatgaagg ctgcagctct cgccaacgtt aacaccagga tgtttggcct
    1051  ggatgggaac gtggcaacaa ctagtgagaa cactgagagg cacactgcca
    1101  ctgatgttaa tcagaacatg cattccctct tagggatgac gcatgggcag
    1151  taaaggcttg ggttctgccc tcgccacagt tatcgtttca cagtcttagc
    1201  taatggttgg ttttagtaaa tagtacgc