Sequence of DPV Saint Floris virus
Saint Floris virus strain Dak ANB 512 polymerase gene, complete cds.
ACC No: JF920136
Dated: 2013-05-31 | Length: 6416 | CRC: -575869469
ID JF920136; SV 1; linear; genomic RNA; STD; VRL; 6416 BP.
XX
AC JF920136;
XX
DT 31-MAY-2013 (Rel. 116, Created)
DT 31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE Saint Floris virus strain Dak ANB 512 polymerase gene, complete cds.
XX
KW .
XX
OS Saint Floris virus
OC Viruses; unclassified viruses.
XX
RN [1]
RP 1-6416
RA Palacios G., Savji N., Shah A., Lipkin W.I.;
RT "Genomic and phylogenetic characterization of Naples serogroup
RT phleboviruses";
RL Unpublished.
XX
RN [2]
RP 1-6416
RA Palacios G., Savji N., Shah A., Lipkin W.I.;
RT ;
RL Submitted (05-MAY-2011) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 772 W 168th Street,
RL 17th Floor, New York, NY 10032, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6416
FT /organism="Saint Floris virus"
FT /segment="L"
FT /host="Tatera sp."
FT /strain="Dak ANB 512"
FT /mol_type="genomic RNA"
FT /country="Central African Republic"
FT /collection_date="1971"
FT /note="serogroup: Naples"
FT /db_xref="taxon:1170426"
FT CDS 19. .6318
FT /codon_start=1
FT /product="polymerase"
FT /protein_id="AFH88999.1"
FT /translation="MDKILRQQLPTDSSLTIRPLENKESTLYDCPLPAFIVTQALTRVE
FT IEIATSEISENASGSTIKPFVTVPIQDLTLFRHNFTFGHLASTTDKKFSEVFGVVESDD
FT SNFQSPDMIIETEAGHVFVIEFTTTLGDFGSALAAARIKIAKYEIACRNRSALKPISLF
FT VIAAYDKGVVTNMELDDNEVNEIVFRFRLARSIHNDLRLINPNLFDADEEMSRLEREVN
FT SLMSSIQIDWETTSRKFPSFREDLFVKFQQSPSDSQYLGRIIKQCIDDAAKGIERDNYY
FT DKDWTNEQRYKENGYRASNSVMSKVSEMLASDFLRGLNDHKSTVQIPAWCTLKGREGKD
FT LSPLKSLVVQGSHPMAKIWDKVCRNAILEKIERMYDDPVEELRYAMSGSRIGDSKEKLK
FT ERNKYHRTTVDLGSEEKEYAAALGVCGKKNSHLHASKEARIRSKKGFSIDHDISKVEQY
FT LADFSEQDWTPNPHLYNPLSEDFILRLEAMGIHQPELVHVDEETPETLKCHKDFSETPY
FT GSWLQMVSIIGAELSASVKQHVKPSQYIVKRLLGSSVYLLIKPTLSKSHIFVSFAVEKQ
FT ALCHELNMSSVFKPSIDAGDLLVTDFVSFKLCKITNLCKAFAVLEAAMCFWVETHGLEP
FT WLFLNQLDSYRLRDAVYMFKLSLLTMMEDKATTEELQTMQRYVIMEGFVSLPEFPNPAK
FT MLSKIPKVLRSELQVFLVRRLFDTIVKISHKPFTIMKSKNIIRWKNLFNPFSGQMITEL
FT QTLISCCYNGYFKNKEEDTEPSALSGMYKKIIELEHLRPKTDKYLGYEDPEKPEMHEFS
FT RSYLKFMCEHAINRLSKQYGKNILKQIENSIIRELSSLTLERLSTLKATSNFNNSWYDY
FT KSVKDKNYTRDKLLVKMTEFAAKGKTLAIELFDECMRRIEQKGCMEICLFKKQQHGGLR
FT EIYVMGADERIVQSVIEAIARAIGRYFDSDTLCNPSNKTKIPETHGLRAKKKCGQSVWT
FT CATSDDARKWNQGHYVTKFALMLCEFTPKEWWPLIIRGCSMFTNKYMMMNLDYLRIIDN
FT HKELNIQDEFVQDLFRAYHGEITVPWMDKEKTYLKTTTGMMQGILHFTSSLLHSLHQEV
FT VRSTSMQLFINKMGPDAASRVVCDVMQGSDDSSMLISFPNISEKVKMRYKMTAAICFRI
FT KKSLGVFAGIYPSEKSTSNTDFVMEYNSEFFFHSQHVRPTIRWIAASCSLPEVETLVAR
FT QEEAANLLTSITEGGGSFSLAAMVQQCQCSIHYMLMGLGVSSLFKEFKSAIYRWKDPGL
FT GFFLFDNPYSAGLSGFKYNLYRAIIGTDLRYIYSYFLKKIKDSQSDDDGVISESCSVSP
FT GGAIVMSSTLRWGSIEKFKRLRARLNIPEDWRERINEVPEILYRAPHSGEETVLRIAEK
FT VHSPGVVSSLSTGNAVCKVMAASVYFLSACIFEDAGNQEYNVTGTDKYSLLQKLLAFEH
FT ASMSDKISHEDMLFLFPNLQEYEAFDAIIYNKGKFNIVPRASQREATQTSIVVFEYHSS
FT SRVAPEKLVSDKWFGTRKSKIGTPGFRAEWDRLRAVVRWLRDTPEETLEASPFTNHIQI
FT RNFFARMEGKPRVIKVTGAPVKKRSGLSKIAMAIRDNFCKTGFVRGMEDEVGYSRAVLV
FT EKLKHYVFSIMMGPYTEEAKLRFLTQVLTDEPQIIMNQADRKSKANTLGLLQMFLKGEA
FT GVAQKIENLKEGIFGAFTRVQRFSKSSINHKYYGKGTWRGVMDGYQVQIDIDGKEGSPS
FT YLSGITVAYCTRPWVLSSCIRAWCDDMNIFNNIDVSTKVKNNDAHFWLFDFKMYGHSYP
FT YGCPIYTVERNITDTAIIMDNEIDIKIRGSTVNLYVKSRENRPRDLHILSYTPVESDVS
FT SIIRLTSDPYFQPGGIFAVEPTRSWMLCQPLKWEFAQPVLNIVSKARTAPIQLDVTRLS
FT EIIRLCTESALRNQVGTIYSLSRSDNLDSSEAVDMSDMFDMMLEDEEGFTGFDDLASHL
FT TVQEDPDYMEEVEFDEEDIQLFGPAHYKEIQKLTVLAHPLMDHFMTRVVNSVGRMQVRR
FT LLEKNLITQDKRKLAELLFIALGKDPSVIKVELIHGDSPVDIPDELLG"
XX
SQ Sequence 6416 BP; 2068 A; 1180 C; 1433 G; 1735 T; 0 other;
jf920136 Length: 6416 31-MAY-2013 Type: N Check: 524 ..
1 acacaaagag gcccaataat ggataaaatc ttacgacaac aactcccgac
51 tgacagcagc ttaacgatca gacctttgga gaataaagag agcactctgt
101 atgattgtcc tttacctgct tttatagtga ctcaggcttt gacaagggtt
151 gagattgaga tagcaacttc tgagatatca gaaaatgctt ctggatctac
201 aattaagccc tttgtcactg tcccgatcca agacctaaca ctatttagac
251 acaacttcac attcggccat ctagctagca caacagacaa gaagttttca
301 gaggtcttcg gggttgtaga gtctgatgac tcaaattttc agtcacctga
351 tatgattata gaaacagaag ctgggcacgt gtttgtaata gaatttacta
401 caactttggg agattttggt tctgctttag cagcagctag gattaaaata
451 gcaaagtatg aaattgcatg cagaaacaga tcagccttga agcccatatc
501 cctgtttgta attgcagctt atgacaaggg ggttgtaaca aatatggagt
551 tagatgacaa cgaggtgaat gagatcgttt tccgatttcg tctagcaagg
601 agtatacata atgatctgag attgatcaac cccaacttgt ttgatgcaga
651 tgaagaaatg agcagacttg aaagagaagt caacagccta atgtcatcaa
701 tccaaattga ctgggaaacc acaagtcgaa agtttccttc tttccgagag
751 gacttatttg tcaagttcca acagtcacct tcagactcac aatatcttgg
801 cagaatcata aaacagtgta ttgatgatgc tgctaaaggg atagagagag
851 acaattatta tgataaagat tggacgaatg agcagaggta caaagagaat
901 ggctaccgag cttctaactc agtgatgtca aaagtctcag aaatgctggc
951 ttcagatttc cttagaggac taaatgatca taagtcaaca gtacagatcc
1001 ctgcatggtg caccttaaaa ggaagagaag gaaaagattt gagtccttta
1051 aaatccttag ttgttcaagg ttcacatcca atggctaaaa tttgggataa
1101 agtgtgtaga aatgccattc tagagaagat tgagcgtatg tatgatgatc
1151 cagtggagga acttaggtat gccatgagtg ggtcaagaat tggcgatagt
1201 aaggaaaaac tcaaagaaag aaacaaatac cataggacaa cagttgactt
1251 gggaagcgag gagaaggagt atgctgctgc tcttggggtt tgtgggaaaa
1301 agaattcaca ccttcatgct tcaaaagaag caagaataag aagtaagaag
1351 ggcttctcaa ttgatcatga tatatcaaaa gtggagcaat acctagctga
1401 tttctcagag caagactgga cccctaatcc tcacttgtat aaccctttga
1451 gcgaagattt tatcttgaga cttgaggcca tgggcataca tcagccagag
1501 ttggttcatg ttgatgaaga gacaccagag acattgaagt gtcataaaga
1551 cttctcagaa accccatacg gctcatggct tcagatggtc tccataattg
1601 gagcagaact gtcagcatct gtcaaacagc atgtcaaacc aagccagtat
1651 atagttaaaa gattacttgg atcatccgta tacctactca ttaagccgac
1701 actctccaaa agccacattt ttgtttcttt tgcagtggaa aaacaagccc
1751 tttgccatga actaaacatg tcaagtgttt ttaagccatc aattgatgct
1801 ggggacttat tagtgacaga ctttgtgtcg ttcaagttat gtaagataac
1851 taatctttgc aaagcatttg cagtactaga agcagccatg tgcttttggg
1901 tggagacaca tggtctagaa ccatggcttt ttctgaatca attggactca
1951 tatagactga gagatgcagt ttacatgttc aaattatcat tgttgacaat
2001 gatggaagac aaggcgacca cagaagagct acagacaatg caaagatatg
2051 ttataatgga aggctttgtt tcccttccag aattccctaa tcctgcaaag
2101 atgttgtcca aaattcctaa agttttaaga tctgagcttc aggtctttct
2151 tgtgagaaga ttgtttgaca caattgtcaa gatctcacat aagcctttta
2201 caatcatgaa gtccaaaaat attatacgat ggaaaaacct tttcaacccc
2251 ttctcaggcc agatgattac ggaactacag actctcataa gttgctgcta
2301 caatggctat ttcaagaata aagaagaaga cacagagcca tcagcattgt
2351 cagggatgta caaaaagatc atagagcttg aacatctgag gccaaagact
2401 gacaagtacc tggggtatga ggatccagag aaacctgaaa tgcatgaatt
2451 cagccgtagt taccttaaat tcatgtgtga gcatgcaatt aatagactgt
2501 caaagcagta tgggaagaac atcttaaaac aaatagagaa tagcataatt
2551 agagaactat cttctctaac tctagagaga ttgtcaacct tgaaggcaac
2601 aagtaatttt aataactcct ggtatgacta taagtctgtc aaagacaaaa
2651 attatactag agataagttg ttggtcaaaa tgacagaatt tgcagcaaaa
2701 ggcaaaacac ttgccattga attgtttgat gaatgtatga ggaggattga
2751 gcagaaagga tgtatggaga tttgtttgtt taagaaacaa cagcacggtg
2801 gactgcgaga gatctatgtg atgggagctg atgagagaat agtgcagtca
2851 gtgattgagg ctattgctcg tgctataggg agatactttg attctgatac
2901 tctatgcaat ccctcaaata aaaccaaaat cccagagact catggactgc
2951 gagcaaaaaa gaaatgtggg caatctgtct ggacatgtgc cacttctgat
3001 gatgctcgta aatggaatca ggggcattat gttaccaagt ttgcattaat
3051 gctctgtgaa tttactccaa aagaatggtg gccactaata ataagaggct
3101 gctctatgtt cacaaacaaa tacatgatga tgaacctgga ttatctaagg
3151 ataatagaca atcataaaga attgaacatc caagatgagt ttgttcaaga
3201 tctcttcaga gcatatcatg gggagatcac agtaccctgg atggataaag
3251 agaaaacata tttgaaaaca actacaggca tgatgcaagg tatcctacac
3301 ttcacatcct cacttttaca ctcactacat caggaagttg tcagatcaac
3351 ttctatgcag ctcttcatca acaaaatggg tcctgatgct gcttccagag
3401 tggtctgtga tgttatgcag ggctctgatg atagcagtat gctaataagc
3451 ttcccaaaca tatctgagaa ggtcaagatg aggtacaaaa tgactgcagc
3501 aatatgtttc aggattaaga aaagtttagg ggtttttgca ggaatatacc
3551 catcagaaaa gtccacatcc aatactgatt tcgtaatgga gtacaattct
3601 gaattcttct tccactctca gcatgttcga ccaacaataa gatggattgc
3651 tgcttcatgc tctctgccag aagtagagac tcttgtggcc agacaggagg
3701 aagcagctaa tctgctgact tccatcactg aaggaggtgg gtcattctca
3751 ttagctgcta tggtccagca atgtcagtgt tccatccatt atatgctcat
3801 gggcctagga gtgagctcac tttttaaaga attcaaatct gccatctatc
3851 gatggaaaga tcctggtttg ggatttttcc tctttgacaa cccatattca
3901 gctgggcttt ctggattcaa atataattta tacagagcaa taatagggac
3951 tgaccttagg tatatatatt catacttcct gaagaagatt aaggattcac
4001 aatctgatga tgatggagtt attagtgaat catgcagtgt gagcccgggt
4051 ggagcaattg tgatgagctc aactctcagg tggggttcca ttgagaaatt
4101 caaacgcctt agagctcgtt taaatatacc tgaagactgg agagagagga
4151 taaatgaagt ccctgaaatt ttgtataggg cccctcactc aggagaagag
4201 acagttctga ggatagcaga aaaagttcac agcccaggtg tcgtatcatc
4251 actcagcact ggaaatgcag tgtgcaaggt tatggctgca tcagtgtact
4301 ttctgtcagc atgcattttt gaagatgctg gtaatcagga gtacaatgta
4351 acaggtacgg ataagtacag cctcttgcag aaactgctgg cattcgaaca
4401 tgcttctatg tctgacaaga ttagtcatga ggacatgctc ttcttattcc
4451 cgaacttaca agagtatgag gcctttgatg ccattattta taacaaggga
4501 aagttcaata tagtccctag ggctagtcaa agagaagcca ctcagacaag
4551 tattgttgtt tttgaatacc actcttcttc tagggtggct cctgagaaac
4601 tggtcagtga caaatggttt ggtacacgga agagtaagat aggaacccca
4651 gggtttagag cagagtggga tagacttaga gcagttgtcc gctggcttag
4701 ggacacacca gaagagactc tagaggcatc tccatttacc aaccacattc
4751 agatcaggaa tttcttcgcc aggatggagg gtaaaccgag agtcataaaa
4801 gtaactggtg caccagtaaa gaagaggtca ggtttaagta agatagccat
4851 ggcaataaga gacaacttct gcaagactgg ttttgtgaga ggcatggagg
4901 atgaagttgg atacagcaga gcagtcctgg ttgagaagct aaagcactat
4951 gtgttctcaa tcatgatggg cccatacact gaagaagcta aattaaggtt
5001 cctgactcaa gtcttaacag atgaaccaca gattattatg aaccaggctg
5051 acaggaagtc taaagccaat acacttggcc tactgcagat gttcttgaaa
5101 ggagaagctg gagtggctca aaagattgag aatcttaagg aggggatctt
5151 tggggcattc acacgagttc aaagattcag caaaagctcg ataaaccata
5201 agtattatgg taagggaacg tggagagggg tgatggatgg ttaccaagtg
5251 caaattgaca ttgatgggaa agagggatct ccttcttacc tctccggtat
5301 aactgtggcc tactgcacac gaccatgggt gttgtcatct tgcattcggg
5351 cctggtgtga tgatatgaac atcttcaaca acatagatgt cagcacaaaa
5401 gtcaagaaca atgatgccca cttctggtta tttgacttta agatgtatgg
5451 acactcatac ccatatggtt gcccaatata tactgtggaa aggaacatca
5501 ccgacacagc tataattatg gacaatgaaa tagacataaa aattcgaggg
5551 agtacagtaa atctctatgt taaaagtaga gagaacaggc caagagatct
5601 tcacatcctg tcttacacac cagttgaatc tgatgttagc tctataatca
5651 gattaacttc ggacccatac tttcaaccgg gagggatttt tgctgtagag
5701 cctaccaggt cttggatgct ctgccagcca ctcaaatggg aatttgctca
5751 acctgtctta aatattgttt ccaaagctag aacagctcct atccagcttg
5801 atgtaaccag acttagtgaa attattagat tatgcacaga gtcagctcta
5851 agaaatcaag ttggtactat ctactctctt agcaggtcag acaatcttga
5901 ttcatcagaa gctgtcgata tgagcgacat gtttgatatg atgctagagg
5951 atgaagaagg atttactgga tttgatgatc ttgcaagcca tcttactgtc
6001 caagaagatc cagattacat ggaggaagtt gagtttgacg aagaagacat
6051 acaattgttt ggacctgctc attataaaga gatacaaaag ctgactgtct
6101 tagctcatcc tcttatggat cactttatga caagagtggt caattctgtg
6151 ggaagaatgc aggtacgtcg actccttgag aaaaatctaa taactcaaga
6201 caaaaggaag cttgcagaac tactgttcat agccttggga aaggacccat
6251 cggtcataaa agtagagtta attcatggtg acagtccagt tgacattcct
6301 gacgaacttc ttgggtagaa agcttcatca atatggcagt tgtaaataag
6351 ataggtggga ttgatagggg ttattttgtt tacttttaga tattaacatt
6401 tgggcggtct ttgtgt