Sequence of DPV Tobacco mosaic virus
Tobacco mosaic virus isolate Shanxi, complete genome.
ACC No: JF920727
Dated: 2011-10-06 | Length: 6395 | CRC: 30697402
ID JF920727; SV 1; linear; genomic RNA; STD; VRL; 6395 BP.
XX
AC JF920727;
XX
DT 06-OCT-2011 (Rel. 110, Created)
DT 06-OCT-2011 (Rel. 110, Last updated, Version 1)
XX
DE Tobacco mosaic virus isolate Shanxi, complete genome.
XX
KW .
XX
OS Tobacco mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Virgaviridae;
OC Tobamovirus.
XX
RN [1]
RP 1-6395
RA Yang J., Luo Z.P., Wang R., Zhang J.Q.;
RT ;
RL Submitted (05-MAY-2011) to the INSDC.
RL National Tobacco Gene Research Center, Zhengzhou Tobacco Research Institute
RL of CNTC, No. 2 Fengyang Street, High-Tech Zone, Zhengzhou, Henan 450001,
RL China
XX
FH Key Location/Qualifiers
FH
FT source 1. .6395
FT /organism="Tobacco mosaic virus"
FT /host="tobacco"
FT /isolate="Shanxi"
FT /mol_type="genomic RNA"
FT /country="China"
FT /collection_date="20-Jun-2010"
FT /db_xref="taxon:12242"
FT CDS 69. .4919
FT /codon_start=1
FT /transl_except=(pos:3417. .3419,aa:OTHER)
FT /product="replication protein"
FT /note="readthrough of stop codon generates full length
FT protein"
FT /protein_id="AEP69248.1"
FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR
FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRPLELEYLMMQIPYGSL
FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ
FT KEAFDRYAEIPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV
FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV
FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW
FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV
FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH
FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLISVAGDALE
FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV
FT FSQMCQSLEVDPMAAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT
FT SREVEEPSMKGSMARGELQMTGLAGDHPESSYSRNEEIESLEQFHMATVDSLIRKQMSS
FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL
FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL
FT RRLLRNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS
FT SGIIVATKDNVKTVDSFMMNFGKSTHCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV
FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS
FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS
FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD
FT MYKVDAGTQXQLQIDSVFKGSNLFVAAPKTGDISDMQFYYDKCLPGNSTMMNNFDAVTM
FT RLTDISLNVKDCILDMSKSVAAPKDQIKPLIPMVRTAAEMPRQTGLLENLVAMIKRNFN
FT APELSGIIDIENTASLVVDKFFDSYLLKEKRKPNKNVSLFSRESLNRWLEKQEQVTIGQ
FT LADFDFVDLPAVDQYRHMIKAQPKQKLDTSIQTEYPALQTIVYHSKKINAIFGPLFSEL
FT TRQLLDSVDSSRFLFFTRKTPAQIEDFFGDLDSHVPMDVLELDISKYDKSQNEFHCAVE
FT YEIWRRLGFEDFLGEVWKQGHRKTTLKDYTAGIKTCIWYQRKSGDVTTFIGNTVIIAAC
FT LASMLPMEKIIKGAFCGDDSLLYFPKGCEFPDVQHSANLMWNFEAKLFKKQYGYFCGRY
FT VIHHDRGCIVYYDPLKLISKLGAKHIKDWEHLEEFRRSLCDVAVSLNNCAYYTQLDDAV
FT WEVHKTAPPGSFVYKSLVKYLSDKVLFRSLFIDGSSC"
FT CDS 69. .3419
FT /codon_start=1
FT /product="replication protein"
FT /note="126 kDa"
FT /protein_id="AEP69247.1"
FT /translation="MAYTQTATTSALLDTVRGNNSLVNDLAKRRLYDTAVEEFNARDRR
FT PKVNFSKVISEEQTLIATRAYPEFQITFYNTQNAVHSLAGGLRPLELEYLMMQIPYGSL
FT TYDIGGNFASHLFKGRAYVHCCMPNLDVRDIMRHEGQKDSIELYLSRLERGGKTVPNFQ
FT KEAFDRYAEIPEDAVCHNTFQTCEHQPMQQSGRVYAIALHSIYDIPADEFGAALLRKNV
FT HTCYAAFHFSENLLLEDSYVNLDEINACFSRDGDKLTFSFASESTLNYCHSYSNILKYV
FT CKTYFPASNREVYMKEFLVTRVNTWFCKFSRIDTFLLYKGVAHKSVDSEQFYTAMEDAW
FT HYKKTLAMCNSERILLEDSSSVNYWFPKMRDMVIVPLFDISLETSKRTRKEVLVSKDFV
FT FTVLNHIRTYQAKALTYANVLSFVESIRSRVIINGVTARSEWDVDKSLLQSLSMTFYLH
FT TKLAVLKDDLLISKFSLGSKTVCQHVWDEISLAFGNAFPSVKERLLNRKLISVAGDALE
FT IRVPDLYVTFHDRLVTEYKASVDMPALDIRKKMEETEVMYNALSELSVLRESDKFDVDV
FT FSQMCQSLEVDPMAAAKVIVAVMSNESGLTLTFERPTEANVALALQDQEKASEGALVVT
FT SREVEEPSMKGSMARGELQMTGLAGDHPESSYSRNEEIESLEQFHMATVDSLIRKQMSS
FT IVYTGPIKVQQMKNFIDSLVASLSAAVSNLVKILKDTAAIDLETRQKFGVLDVASRKWL
FT IKPTAKSHAWGVVETHARKYHVALLEYDEQGVVTCDDWRRVAVSSESVVYSDMAKLRTL
FT RRLLRNGEPHVSSAKVVLVDGVPGCGKTKEILSRVNFDEDLILVPGKQAAEMIRRRANS
FT SGIIVATKDNVKTVDSFMMNFGKSTHCQFKRLFIDEGLMLHTGCVNFLVAMSLCEIAYV
FT YGDTQQIPYINRVSGFPYPAHFAKLEVDEVETRRTTLRCPADVTHYLNRRYEGFVMSTS
FT SVKKSVSQEMVGGAAVINPISKPLHGKILTFTQSDKEALLSRGYSDVHTVHEVQGETYS
FT DVSLVRLTPTPVSIIAGDSPHVLVALSRHTCSLKYYTVVMDPLVSIIRDLEKLSSYLLD
FT MYKVDAGTQ"
FT CDS 4903. .5709
FT /codon_start=1
FT /product="movement protein"
FT /note="30 kDa"
FT /protein_id="AEP69249.1"
FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKIMVH
FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT
FT LGSYYTAAAKKRFQFKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC
FT IVYRNNIKLGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK
FT GKISSSDRSVPNKNYRNVKDFEGMSFKKNNLIDDDSETTVAESDSF"
FT CDS 5712. .6191
FT /codon_start=1
FT /product="coat protein"
FT /note="17.5 kDa"
FT /protein_id="AEP69250.1"
FT /translation="MSYNITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV
FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT
FT TAETLDATRRVDDATVAIRSAINNLVVELIRGTGSYNRSSFESSSGLVWTSGPAT"
XX
SQ Sequence 6395 BP; 1860 A; 1215 C; 1545 G; 1775 T; 0 other;
jf920727 Length: 6395 06-OCT-2011 Type: N Check: 5227 ..
1 gtatttttac aacaattacc aacaacaaca aacaacaaac aacattacaa
51 ttactattta caattacaat ggcatacaca cagacagcta ccacatcagc
101 tttgctggac actgtccgag gaaataactc cttggtcaac gatctagcaa
151 agcgtcgtct ttacgacaca gcggttgaag agtttaacgc tcgagaccgc
201 aggcccaaag tgaacttttc aaaagtaata agcgaggagc agacgcttat
251 tgctacccgg gcatatccag aattccaaat tacattttat aacacgcaaa
301 atgccgtgca ttcgcttgca ggtggattgc gacctttaga gctggaatat
351 ctgatgatgc aaattcccta cggatcattg acttatgaca taggtgggaa
401 ttttgcatcg catctgttca agggacgagc atacgtacac tgctgcatgc
451 ccaacctgga cgttcgagac atcatgcggc atgaaggcca gaaagacagt
501 atcgaactat acctttctag gctagagaga gggggaaaaa cagtccccaa
551 cttccaaaag gaagcatttg acagatacgc agaaattcct gaggacgctg
601 tctgtcacaa tactttccag acatgtgaac atcagccgat gcagcaatca
651 ggcagagtgt atgccattgc gctacacagc atatatgaca tacccgctga
701 tgagttcggg gcggcacttt tgaggaaaaa cgtccatacg tgctatgccg
751 ctttccactt ctctgagaac ctgcttcttg aagattcata cgtcaatttg
801 gacgaaatca acgcgtgttt ttcgcgcgat ggagacaaat tgaccttttc
851 ttttgcatca gagagtactc ttaattactg tcatagttat tcaaatattc
901 ttaagtatgt gtgcaaaact tacttcccgg cctctaatag agaggtttac
951 atgaaggagt ttttagtcac cagggttaat acctggtttt gtaagttttc
1001 tagaatagat acttttcttt tgtacaaagg tgtggcccat aaaagtgtag
1051 atagtgagca gttttatact gcaatggaag acgcatggca ttacaaaaag
1101 actcttgcaa tgtgcaacag cgagagaatt ctccttgagg attcatcatc
1151 agtcaattac tggtttccca aaatgaggga tatggtcatc gtaccattat
1201 tcgacatttc tttggagact agtaagagga cgcgcaagga agtcttagtg
1251 tccaaggatt tcgtgtttac agtgcttaac cacattcgaa cataccaggc
1301 gaaagctctt acatacgcga atgttttgtc cttcgtcgaa tcgattcgtt
1351 cgagggtaat cattaacggt gtgacagcga ggtccgaatg ggatgtggac
1401 aaatctttgt tacaatcctt gtccatgacg ttttacctgc atactaagct
1451 tgccgttcta aaggatgatt tattgattag caagtttagt ctcggttcga
1501 aaacggtgtg tcagcatgtg tgggatgaga tttcgctggc gtttgggaac
1551 gcatttccct ccgtgaaaga gaggctcttg aacaggaaac ttatcagtgt
1601 ggcaggtgac gcattagaga tcagggtgcc tgatctatat gtgactttcc
1651 acgacagatt agtgactgag tataaggcct ctgtggacat gcctgcgctt
1701 gacattagga agaagatgga agaaacggaa gtgatgtaca atgcactttc
1751 ggagttatcg gtgttaaggg agtctgacaa attcgatgtt gatgtttttt
1801 cccagatgtg ccaatctttg gaagttgacc caatggcagc agcgaaggtt
1851 atagtcgcgg tcatgagcaa tgagagcggt ttgactctca catttgaacg
1901 acctacagag gcgaatgttg cgctagcttt acaggatcaa gagaaggctt
1951 cagaaggtgc tttggtagtt acctcgaggg aagttgaaga accgtccatg
2001 aagggttcaa tggccagagg agagttacaa atgacaggtc ttgctggaga
2051 tcatccggag tcgtcctatt ctaggaacga ggagatagag tctttagagc
2101 agtttcatat ggcaacggta gattcgttaa ttcgtaagca gatgagctcg
2151 attgtgtaca cgggtccgat taaagttcag caaatgaaaa actttatcga
2201 tagcctggta gcatcactat ctgctgcggt gtcgaatctc gtcaagatcc
2251 tcaaagatac agctgctatt gaccttgaaa cccgtcaaaa gtttggagtc
2301 ttggatgttg catctaggaa gtggttgatc aaaccaacgg ccaagagtca
2351 tgcatggggt gttgtcgaaa cccacgcgag gaagtatcat gtggcgcttt
2401 tggaatatga tgagcagggt gtggtaacat gcgatgattg gagaagagta
2451 gctgtcagct ctgagtctgt tgtttattcc gacatggcga aactcagaac
2501 tctgcgcaga ctgcttcgaa acggtgaacc gcatgtcagt agcgcaaagg
2551 ttgttcttgt ggacggagtt ccgggctgtg gaaaaaccaa agaaattctt
2601 tccagggtta attttgatga agatctaatt ctagtacctg ggaagcaagc
2651 cgcggaaatg atcagaagac gtgcgaattc ctcagggatt attgtggcca
2701 cgaaggacaa cgttaaaact gttgattctt tcatgatgaa ttttgggaaa
2751 agcacacact gtcagttcaa gaggctattc attgatgaag gattgatgtt
2801 gcatactggt tgtgttaatt ttcttgtggc gatgtcattg tgcgaaattg
2851 catatgttta cggagacaca cagcagattc catacatcaa tagagtttca
2901 ggattcccgt accccgccca ttttgccaaa ttggaagttg acgaggttga
2951 gacacgcaga actactctcc gttgtccagc cgatgtcaca cattatctga
3001 acaggagata tgagggcttt gtcatgagta cttcttcggt taaaaagtct
3051 gtttcgcagg agatggttgg cggagccgcc gtgatcaatc cgatctcaaa
3101 acccctgcat ggcaagatcc tgacgtttac ccaatcggat aaagaagctc
3151 tgctttcaag agggtattca gatgttcaca ctgtgcatga agtgcaaggc
3201 gagacatact ctgatgtttc actagttagg ttaaccccta caccagtctc
3251 catcattgca ggagacagcc cacatgtttt ggttgcattg tcgaggcaca
3301 cctgttcgct caagtactac actgttgtta tggatccttt agttagtatt
3351 attagagatc tagagaaact tagctcgtac ttgttagata tgtataaggt
3401 cgatgcaggt acacaatagc aattacagat tgactcggtg ttcaaaggtt
3451 ccaatctttt tgtggcagcg ccaaagactg gtgatatttc cgatatgcaa
3501 ttttactatg ataagtgtct cccaggcaac agcaccatga tgaataattt
3551 tgatgctgtt accatgaggt tgactgacat ttcattgaat gtcaaagatt
3601 gcatattgga tatgtccaag tctgttgctg cgcctaagga tcagatcaaa
3651 ccactaatac ctatggtacg aacggcggca gaaatgccac gccagactgg
3701 actattggaa aatttagtgg cgatgattaa aaggaacttt aacgcacccg
3751 agttgtctgg catcattgat attgaaaata ctgcatcttt agttgtagat
3801 aagttttttg atagttattt gcttaaagaa aaaagaaaac caaataaaaa
3851 tgtttctttg ttcagtagag agtctctcaa tagatggtta gaaaagcaag
3901 aacaggtaac aataggccag ctcgcagatt ttgattttgt ggatttgccg
3951 gcagttgatc agtatagaca catgatcaaa gcacaaccca agcaaaaatt
4001 ggacacttca atccaaacgg agtacccggc tttgcagacg attgtgtacc
4051 attcaaaaaa gatcaatgca atatttggcc cgttgtttag tgagcttact
4101 aggcaattac tggacagtgt tgattcgagc agatttttgt ttttcacaag
4151 aaagacacca gcgcagattg aggatttctt cggagatctc gacagtcacg
4201 tgccgatgga tgtcttggag ctggatatat caaaatacga caaatctcag
4251 aatgaattcc actgtgcagt agagtatgag atctggcgaa gattgggttt
4301 tgaagatttc ttgggagaag tttggaagca agggcataga aagaccacgc
4351 tcaaagatta taccgcaggt atcaaaactt gcatctggta tcaaagaaag
4401 agcggggacg tcacgacgtt cattggaaac actgtgatca ttgctgcatg
4451 tttggcctcg atgcttccga tggagaaaat aatcaaagga gccttttgtg
4501 gtgacgatag tctgctgtac ttcccaaagg gttgtgagtt tccggatgtg
4551 caacactccg cgaatcttat gtggaatttt gaagcaaaac tgtttaaaaa
4601 acagtatgga tacttttgcg gaaggtatgt aatacatcac gacagaggat
4651 gcattgtgta ttacgatccc ctaaagttga tctcgaaact tggtgctaaa
4701 cacatcaagg attgggaaca cttggaggag ttcagaaggt ctctttgtga
4751 tgttgctgtt tcgttgaaca attgtgcgta ttacacacag ttggacgacg
4801 ctgtatggga ggttcataag accgcccctc caggttcgtt tgtttataaa
4851 agtctggtga agtatttgtc tgataaagtt ctttttagaa gtttgtttat
4901 agatggctct agttgttaaa ggaaaagtga atatcaatga gtttatcgac
4951 ctgacaaaaa tggagaagat cttaccgtcg atgtttaccc ctgtaaagag
5001 tgtcatgtgt tccaaagttg ataaaataat ggttcatgag aatgagtcat
5051 tgtcagaggt aaaccttctt aaaggagtta agcttattga tagtggatac
5101 gtctgtttag ccggtttggt cgtcacgggc gagtggaact tgcctgacaa
5151 ttgcagagga ggtgtgagcg tgtgtctggt agacaaaagg atggaaagag
5201 ccgacgaggc cactctcgga tcttactaca cagcagctgc aaagaaaaga
5251 ttccagttca aggtcgttcc caattatgct ataaccaccc aggacgcgat
5301 gaaaaacgta tggcaagttt tagtcaatat tagaaatgta aagatgtcag
5351 cgggtttctg tccgctttct ctggagtttg tgtcggtgtg tatcgtttat
5401 agaaataata taaaattagg tttgagagag aagattacaa acgtgagaga
5451 cggtgggccc atggaactta cagaagaagt tgttgatgag ttcatggaag
5501 atgtccctat gtcaatcagg cttgcaaagt ttcgatctcg aaccggaaaa
5551 aagagtgatg tccgtaaagg gaaaattagt agtagtgatc ggtcagtgcc
5601 gaacaagaac tatagaaatg ttaaggattt tgaaggaatg agttttaaaa
5651 agaataattt aatcgatgat gattcggaga ctactgtcgc cgaatcggat
5701 tcgttttaaa tatgtcttac aatatcacta ctccatctca gttcgtgttc
5751 ttgtcatcag cgtgggccga cccaatagag ttaattaatt tatgtactaa
5801 tgccttagga aatcagtttc aaacacaaca agctcgaact gtcgttcaaa
5851 gacagttcag tgaggtgtgg aaaccttcac cacaagtaac tgttaggttc
5901 cctgacagtg actttaaggt gtataggtat aatgcggtac tagacccgct
5951 agtcacagca ttgttaggtg catttgacac tagaaataga ataatagaag
6001 ttgaaaatca ggcgaacccc acgactgccg aaacgttaga cgctactcgt
6051 agagtagacg acgcaacggt ggccataagg agcgctataa ataatttagt
6101 agtagaattg atcagaggaa ccggatctta taatcggagc tctttcgaga
6151 gctcttctgg tttggtttgg acctctggtc ctgcaacttg aggtattcaa
6201 gatgcataat aaataacgga ttgtgtccgt aatcacacgt ggtgcgtacg
6251 ataacgcata gtgtttttcc ctccacttaa atcgaagggt tgtgtcttgg
6301 atcgcgcggg tcaaatgtat atggttcata tacatccgca ggcacgtaat
6351 aaagcgaggg gttcgaatcc ccccgttacc cccggtaggg gccca