Sequence of DPV Naples virus
Naples virus strain Sabin polymerase gene, complete cds.
ACC No: JF939843
Dated: 2013-05-31 | Length: 6404 | CRC: 474971150
ID JF939843; SV 1; linear; genomic RNA; STD; VRL; 6404 BP.
XX
AC JF939843;
XX
DT 31-MAY-2013 (Rel. 116, Created)
DT 31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE Naples virus strain Sabin polymerase gene, complete cds.
XX
KW .
XX
OS Naples virus
OC Viruses; unclassified viruses.
XX
RN [1]
RP 1-6404
RA Palacios G., Savji N., Shah A., Lipkin W.I.;
RT "Genomic and phylogenetic characterization of Naples serogroup
RT phleboviruses";
RL Unpublished.
XX
RN [2]
RP 1-6404
RA Palacios G., Savji N., Shah A., Lipkin W.I.;
RT ;
RL Submitted (12-MAY-2011) to the INSDC.
RL Center for Infection and Immunity, Columbia University, 772 W 168th Street,
RL 17th Floor, New York, NY 10032, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .6404
FT /organism="Naples virus"
FT /segment="L"
FT /host="Homo sapiens"
FT /strain="Sabin"
FT /mol_type="genomic RNA"
FT /country="Italy"
FT /isolation_source="serum"
FT /collection_date="1944"
FT /note="serogroup: Naples"
FT /db_xref="taxon:1170423"
FT CDS 19. .6306
FT /codon_start=1
FT /product="polymerase"
FT /protein_id="AFH89007.1"
FT /translation="MERILKKQPAPDGALTIHPLRRYDSTIYETPIPAYVIKHTSEGVT
FT IDIATSELADYQSGSTIQPFESIPAQNLTLFKHDFTFGHLAETTDRKFVEVFGVLENRA
FT DDSDYQSPDVIIETESGHVHVIEFTTTMGDLGSAEVAARNKIAKYEIACLNRSAIKPIS
FT LHIIAVHFNGVVSNLELNDEEVNEIVFRFRLARDIFEELREINPSLFDSDETISRLERE
FT VNSVMSSVRINWGLTSEKFPSFKEELFSNYNNNDANQEYLVRIIKKCTDEAIKGIEKDS
FT LFDEDLSHSERMNRNADKVSLNIKSKIAEMLSYDFLRDADDHKSTVQIPPWVTLEGHKG
FT KDLEPLKSLSVEGSHPMCKIWNKVCTNASIDKIERMHDDPQAELEYAMSGSTERAVERN
FT KYHRTVLTLSSDEKEYAAVLGVCGKKNSNLGAVKEARVRSKKGFSIEHDVSKVEEYLYD
FT INVIDLKPAEGLYNPLSEDIRLRELAMGLHQPTLIHVDGQLPETLECHRDFLMTPLGSW
FT AQMVSVIGAELSASVKQHVKPNQLIVKRLLGSSVYLLIKPTTSKGHIFVSFAVDRRYLI
FT RDLSKSSIFKPSIPAGDLMVTDFVSFKLSKITNLCRSLCMVEAAACFWSETYGYEPWRM
FT LEHVDETKFKDTWFMIKLSLLTMMEDKATTEELQTIQRYVVMEGFVSLPELPNPSKMLS
FT KIPKVLRSELQVFLTHRVLNTMQVISKNPFQLHRIGANIKWKSLFNPFSGNGVDELQTL
FT ISCCYNGYFKNKEEETEPSALSAMYKKIIELEHLRPNTDQYLGYEDPEEPKMHEFSRSY
FT LKLICDHAKGKLRKQYGRGVMSQIESSIIREVSSITLERLATLKATSNFNSNWYVYKDV
FT RDKNYTRDKLLVKMTQFAKRGKTLAIEMFEECMSRIEEKGCMEICLFKKQQHGGLREIY
FT VMGADERIVQSIIEAIARAIGRFFDSDTLCNPTNKTKIPETHGQRAKRRCGRSVWTCAT
FT SDDARKWNQGHFVTKFALMLCEFTPEEWWPLIIRGCSMFTNKYMMMNLDFMRIIDSHKE
FT LNIEDEFVTKLFSAYHGETVEPWIDQGKTYLKTSTGMMQGILHFTSSLLHSLHQEFIRT
FT TSMQLFTNKMGSEASSKVVCDVMQGSDDSSMIISFPAENEKMKMRYKLIAAMCFRIKKS
FT LGIYIGIYPSEKSTPNTDFVMEYNSEFFFHSQHIRPTIRWIAASCSLPEVETLVARQEE
FT AANLLTAVTEGGGSFSLAAMVQQCQCTIHYMLMGMGVSAIFEQFSKAISKWMDPGLGFF
FT LFDNPYSAGLSGFKYNLYRAIMNSDLKYVYSFFMRRVKGSSTKEDAIISESCSVSPGGA
FT IVMSSTLRWGSVEKFKRLRNRLDIPEDWKDMINNSPEVLYRAPQTGTEIMLRIAEKVHS
FT PGVVSSLSTGNAVCKVMASSVYFLSACIFEDAGNQEYKILNNDKYSLLQKIVAFDQFSG
FT GEDISQEDLLFLFPNLVEFEAFDSIIYDKGKFNIVPRASQREATQTRIVVFEHHSSARV
FT APEKLVSDKWFGTRKSKIGSPGFRQEWTRLKAIVRWLKDNPEETLDASPFSNHVQIRNF
FT FARMEGKPRVIKVTGAPVKKRSGMSKIAMAIRDNFCKTGFLQGLEDEIGHSRAMQVEKL
FT KHYLFSILLGPYTEDAKLEYVVKILREEPQVILNYNDKRSRANIISLLQRFIKSEVGIA
FT NLIEEMKAGVFGAFVKTQHFSHSSINNKYYGRGIWKGVMDGYQIQIDIDGKEGMPSHLT
FT GITISNCSKPWVLTQSIKAWCDDMLVNNNVDVSKGNTKANYWMYGFKMYGASYPYGCPI
FT TLVRHDITNLGLLHDDDIDIKVRRNTINLFVRSTDKRPRDLHILSYTPSDSDISSVSSK
FT HIMRDEYFSNKGSFTVEPTRSWMLCQPLSWMFVKPVLQVMSGKRTSPRQLDTERLKEIV
FT RLCTESAIRNKVGTVYSQNKPEKLIESEPIDMSEMFDMMLEEGIDDVFEDIADCLTVDE
FT DPDYMDEVDFDDESLNLFGPAHYKEIQSMTVLAHPLMDEFITKLVSKLGRSKIRRLLEK
FT SIVTTEHRALAELLFLALGRDPSQIKEELIQGDSPTDIPDDLLG"
XX
SQ Sequence 6404 BP; 2056 A; 1134 C; 1508 G; 1706 T; 0 other;
jf939843 Length: 6404 31-MAY-2013 Type: N Check: 8355 ..
1 acacaaagag gcccaaatat ggaaagaatc cttaagaaac aaccagctcc
51 tgatggagcc ttaaccattc atccactgag gcggtacgat tcaaccattt
101 atgaaacacc tattcctgct tatgtcatta agcatacctc tgagggtgtt
151 actattgaca ttgcaacgtc agaattggct gattaccagt cagggtcaac
201 aatacagccc tttgaatcaa tccctgcaca aaacctaaca ttattcaagc
251 atgactttac ttttggtcat ctggcagaga cgacggatag aaaatttgtg
301 gaggtgtttg gagtgcttga aaacagagcc gatgattctg actaccaatc
351 gccagatgtc attattgaga cggaatctgg tcatgttcat gtcatagagt
401 tcacaactac catgggagac ctgggttcag ctgaggtggc agctagaaat
451 aaaatagcaa aatatgagat tgcatgcttg aaccggtcgg caattaagcc
501 catttcatta cacataattg cagtgcattt caatggtgtg gtatcaaact
551 tagagctaaa cgatgaggag gtcaatgaga ttgtctttag attcaggcta
601 gctagagaca tctttgagga gcttagagaa attaatcctt ctcttttcga
651 ttcagatgaa acaattagta ggcttgagag agaagtgaac agtgtgatgt
701 cttctgtaag gattaactgg ggactgacaa gtgagaaatt ccctagtttc
751 aaggaggaac tattctcaaa ttacaataat aatgatgcta accaagaata
801 tctagttcgg atcattaaga agtgcactga tgaggcaatt aaaggtatag
851 aaaaggacag cttatttgat gaagatctgt cacattctga gagaatgaat
901 cgaaatgcag ataaggtgag cttaaacatt aagagcaaga ttgcagagat
951 gctgtcttat gatttcctca gagatgctga tgatcacaag tcaactgtcc
1001 agatcccacc ttgggtgaca cttgaagggc acaagggtaa agatctagaa
1051 cctttgaaat cattgtcagt tgaaggttca caccccatgt gtaagatctg
1101 gaataaggtg tgcacaaatg cttctataga taagattgaa aggatgcatg
1151 atgatcctca agctgagttg gagtatgcta tgtctggatc aactgaaagg
1201 gctgttgaac gaaacaagta tcatcgaact gttctaactt tgtctagtga
1251 tgagaaagaa tacgcagcgg ttttaggagt gtgtggtaag aagaacagca
1301 accttggagc tgtcaaggag gctagggtga gaagcaagaa ggggttctca
1351 atagagcatg atgtgagcaa agttgaggag tatctgtatg acatcaatgt
1401 aattgactta aagccagcag aaggcctcta caatcctttg tccgaagata
1451 taaggcttag agaactagct atggggctcc atcaaccaac actaatacat
1501 gtggatggac agcttcctga gacacttgag tgtcataggg acttcctaat
1551 gacgccgtta ggtagctggg cacagatggt ttcagtgata ggtgcagaat
1601 tgtcagcatc tgttaagcag catgtaaagc ctaaccagct catcgtgaag
1651 aggcttttag ggtcttcagt ttacctacta ataaaaccca ccacatctaa
1701 agggcatatc tttgtgtctt ttgcagttga cagaaggtac ttgataaggg
1751 acttgagtaa gtcttcaatc ttcaagccct ctattccagc aggagacctt
1801 atggtgaccg attttgtttc atttaagctg agcaagatca ccaacctttg
1851 cagatccctg tgtatggtgg aggcagcagc atgtttctgg tcagagacat
1901 atggatacga accctggagg atgttggaac atgttgatga aacaaagttc
1951 aaagatactt ggtttatgat taagttgtct ttacttacga tgatggaaga
2001 caaagcgacc actgaggaat tacagactat tcagcgatat gtagtaatgg
2051 aaggctttgt gtccttacca gagttgccaa atccctcaaa aatgctctct
2101 aaaattccaa aagtgcttag gtctgaacta caggttttcc tgactcacag
2151 agtactgaac acaatgcaag tgatatccaa gaatccattc caattacata
2201 gaattggggc aaatataaag tggaaatcac tgttcaatcc attttctgga
2251 aatggtgtag atgagttgca aacactcatt agttgctgct acaacggcta
2301 tttcaaaaat aaggaggaag aaactgagcc atcagcactg tctgcaatgt
2351 acaagaagat tatagaactt gagcatctga gacccaatac tgatcagtac
2401 cttggatacg aagatccaga ggagcccaaa atgcatgaat tcagcagaag
2451 ttatttaaag ctcatatgtg accatgctaa gggtaagttg agaaagcaat
2501 atggcagggg tgttatgagt cagattgaaa gcagtattat tagagaggtc
2551 tcttcaatca cattggaaag actcgccacc ttgaaagcaa ccagtaactt
2601 taatagtaac tggtatgttt ataaggatgt gcgagacaag aattatacaa
2651 gagacaagtt attagtcaag atgactcaat ttgctaagag aggtaaaact
2701 ctagcaatag agatgtttga ggagtgcatg agcaggatcg aggagaaggg
2751 ttgcatggag atttgcttat ttaaaaaaca gcaacatggg gggttaagag
2801 aaatttatgt gatgggtgct gatgaaagga ttgttcagtc aataattgag
2851 gcaatagcaa gagccatagg gaggtttttt gactcagaca cactttgtaa
2901 tcccaccaat aaaacaaaaa tacccgagac tcatggccag agagccaaga
2951 gaagatgtgg aaggtcagta tggacctgtg caacttcaga tgatgcgaga
3001 aaatggaatc aggggcattt tgtaactaaa tttgctctca tgttatgtga
3051 gttcacacct gaggaatggt ggccacttat cattagaggc tgttcaatgt
3101 tcacaaataa gtatatgatg atgaatcttg acttcatgag aatcatagac
3151 agccacaagg aattgaacat cgaagatgaa tttgtaacaa aattgttttc
3201 agcctaccat ggagagacag tggagccatg gatagaccaa gggaaaacat
3251 atctgaagac aagtacaggt atgatgcaag ggatactcca cttcacatct
3301 tcattattgc actcactaca ccaagaattt attagaacca cttccatgca
3351 gcttttcact aataaaatgg gctcagaagc ctcatcaaaa gtagtgtgtg
3401 atgttatgca aggctctgat gacagcagca tgattattag ttttccagca
3451 gaaaatgaga aaatgaagat gagatataag ttaatagcag caatgtgctt
3501 tagaatcaag aaaagcttag gcatttatat aggaatctac ccttctgaaa
3551 aatcaacacc taacactgat tttgtcatgg aatataattc tgagttcttc
3601 ttccattctc agcatatcag gccaactatt agatggatag cggcttcttg
3651 ctccctcccg gaggttgaga ctttggtagc tagacaagag gaagcagcaa
3701 atctgctgac tgctgtcaca gaaggtgggg gttcattctc cttagcggca
3751 atggtgcaac agtgtcaatg cacaatccat tatatgctaa tgggaatggg
3801 tgttagcgcc atatttgagc agttttcaaa agcaatctct aaatggatgg
3851 acccagggtt aggctttttc ttatttgata acccgtattc agctggcttg
3901 tctggtttca agtataatct ctatagagcc ataatgaact cagatttgaa
3951 gtatgtttac tcatttttca tgaggagagt caaaggatca tccaccaagg
4001 aagatgcaat tataagtgag tcatgtagtg tgagccctgg tggagccata
4051 gtgatgagtt ctactctaag atggggttca gttgagaaat tcaaaaggct
4101 tagaaacagg cttgacattc ctgaggactg gaaagacatg attaacaata
4151 gtcctgaagt gctatacagg gctcctcaga ctgggacaga gatcatgctc
4201 aggattgctg agaaagttca tagtcctggg gttgtctctt ctcttagcac
4251 tgggaatgca gtgtgtaaag tgatggcgtc atcggtttat tttctttcag
4301 catgcatttt tgaagatgca gggaatcaag agtataaaat cttgaataat
4351 gacaagtaca gccttcttca gaagattgtg gcttttgacc aattctcagg
4401 tggggaggat attagtcagg aagatctcct gttcctattc cctaacctgg
4451 tggaatttga ggcctttgac tctattattt atgataaagg gaaattcaac
4501 attgttccaa gagccagcca gagagaagct acccagacca ggatagtggt
4551 ttttgagcat cactcttctg caagagtggc tccagagaaa ttagttagtg
4601 acaagtggtt tggaacaaga aagagcaaaa tcggttcccc tggcttcagg
4651 caggaatgga ctagattgaa ggctattgtt aggtggctaa aagacaaccc
4701 agaagaaacc ctagatgcct ctccattctc aaatcatgtt caaattcgga
4751 actttttcgc aagaatggag ggaaagccaa gagtcataaa ggtgacaggg
4801 gcaccggtga agaagcgatc aggtatgagc aagatcgcaa tggcaataag
4851 agataacttt tgcaagactg gttttttgca agggctggag gatgaaattg
4901 gtcatagtag agccatgcaa gtagagaaat taaagcatta ccttttctcc
4951 attctgttag gcccatatac agaagatgcg aaactagagt atgttgtgaa
5001 aattctcaga gaagagccgc aggtcattct aaattataac gacaaaaggt
5051 caagagcaaa cataataagc ctcctgcaaa gatttatcaa aagtgaggtg
5101 gggatagcaa atttaattga agagatgaaa gctggagtct ttggagcatt
5151 tgtcaaaacc caacacttta gtcacagctc tatcaacaat aagtactatg
5201 gtagggggat ctggaaaggt gtaatggatg ggtatcaaat tcagattgac
5251 atagatggga aagagggcat gccatctcac ttgaccggaa tcaccatctc
5301 taactgttca aagccatggg tgttaacaca aagcataaaa gcatggtgtg
5351 atgacatgct tgtgaacaat aatgtagatg tttcaaaagg aaacacgaaa
5401 gccaactatt ggatgtacgg gtttaagatg tatggagcgt cttaccccta
5451 tggttgtccg ataaccttag tgaggcatga tataacaaat cttggtttgc
5501 tacatgacga tgacattgat ataaaagtca ggagaaacac aataaattta
5551 tttgtaagga gcacagataa aaggcctaga gatctccaca tcttatcata
5601 caccccatct gactctgaca ttagctctgt cagctccaaa catatcatga
5651 gagatgaata tttttcaaat aaagggtcat tcactgtaga acccacaagg
5701 tcctggatgc tttgccagcc tctgtcatgg atgttcgtga agcctgtact
5751 gcaagtgatg tcgggaaaga ggacaagtcc cagacaattg gacacagaaa
5801 gacttaagga aattgttagg ttgtgcactg aatctgctat caggaacaag
5851 gtgggaactg tctatagcca gaataaacca gagaagttga ttgagtctga
5901 gccaattgat atgagcgaga tgtttgatat gatgctagag gaggggatag
5951 atgatgtgtt tgaagacatt gctgattgcc taacagtgga tgaggatcct
6001 gactacatgg atgaggttga ctttgatgat gaaagtctca acctttttgg
6051 tcctgcccac tataaggaga tccagagcat gacagttctc gcccacccat
6101 tgatggacga attcattacc aagttggtga gtaaactggg gcgatcaaaa
6151 attaggaggt tgctagaaaa atcaatagtc actacagagc acagggctct
6201 ggctgaactc ctatttttgg ctttgggcag agatccgtca cagattaaag
6251 aggagttaat tcaaggggat agcccaacag acatccctga cgatctcctt
6301 gggtaatcat taaatgaatt gcgataaagg agaagaatag tgtaccaaca
6351 atgcatgaca gaaacacggt tttaggtttt ccaaaaattg ggcggtcttt
6401 gtgt