Sequence of DPV Naples virus

Naples virus strain Sabin nucleoprotein and non-structural protein genes, complete cds.

ACC No: JF939845

Dated: 2013-05-31 | Length: 1843 | CRC: 1583584643

                
ID   JF939845; SV 1; linear; genomic RNA; STD; VRL; 1843 BP.
XX
AC   JF939845;
XX
DT   31-MAY-2013 (Rel. 116, Created)
DT   31-MAY-2013 (Rel. 116, Last updated, Version 1)
XX
DE   Naples virus strain Sabin nucleoprotein and non-structural protein genes,
DE   complete cds.
XX
KW   .
XX
OS   Naples virus
OC   Viruses; unclassified viruses.
XX
RN   [1]
RP   1-1843
RA   Palacios G., Savji N., Shah A., Lipkin W.I.;
RT   "Genomic and phylogenetic characterization of Naples serogroup
RT   phleboviruses";
RL   Unpublished.
XX
RN   [2]
RP   1-1843
RA   Palacios G., Savji N., Shah A., Lipkin W.I.;
RT   ;
RL   Submitted (12-MAY-2011) to the INSDC.
RL   Center for Infection and Immunity, Columbia University, 772 W 168th Street,
RL   17th Floor, New York, NY 10032, USA
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1843
FT                   /organism="Naples virus"
FT                   /segment="S"
FT                   /host="Homo sapiens"
FT                   /strain="Sabin"
FT                   /mol_type="genomic RNA"
FT                   /country="Italy"
FT                   /isolation_source="serum"
FT                   /collection_date="1944"
FT                   /note="serogroup: Naples"
FT                   /db_xref="taxon:1170423"
FT   CDS             36. .797
FT                   /codon_start=1
FT                   /product="nucleoprotein"
FT                   /protein_id="AFH89009.1"
FT                   /translation="MSEENYREIALAFLDEAADSGTITAWVNEFAYQGFDPKRIVQLVK
FT                   ERGTAKGRDWKKDVKMMIVLNLVRGNKPEAMMKKMSEKGAGIVAQLISVYQLKEGNPGR
FT                   DTITLSRVSAAFVPWTIQALRVLSDSLPVTGTTMDAIAGVTYPRAMMHPSFAGIIDLDL
FT                   PNRAGEAIADAHGLFMLEFSKTINPSLRTKQPNEIAATFEKPNMAAMSGRFFTREDKKK
FT                   LLMAVGILNEDLVLTPAIVKCAEKYCSKVGK"
FT   CDS             complement(859. .1788)
FT                   /codon_start=1
FT                   /product="non-structural protein"
FT                   /protein_id="AFH89010.1"
FT                   /translation="MQSSLVFLKPKSSKDKNRKFPRFYVNVRMGEFDPSRRFCLLESEI
FT                   PIYVDKYKVVLDSRPTLSHFLSKREFPAFIGYDSITGQRTKLYDPTIQELFGESINSLK
FT                   RHRVDFLVSALRWPTGVPSLEFIEYYLDDHIFLSDEPDLVMSKYLKLLVKASGLFNTSI
FT                   EDQIVEVHRRTLLEGMKHGLTKEDLPGNDLIGELCVVQAARVASHVAKSAHRRISDLRF
FT                   HIYFSVSPVELHLVKRPRKVDVTKGLARMNCEDSYRYFLHNSESFREDALSTVWTKDWP
FT                   TPKEQLDKDKPCSSLRLWLPNPPTFPPI"
XX
SQ   Sequence 1843 BP; 517 A; 402 C; 425 G; 499 T; 0 other;

jf939845 Length: 1843  31-MAY-2013  Type: N  Check: 6253  ..

       1  acaaagaatc ccgttattta actaaacaaa acaacatgtc tgaggagaac
      51  tatcgtgaga ttgccttagc cttccttgat gaagctgcag actcaggcac
     101  tattactgcc tgggtgaatg agtttgctta ccaggggttc gacccaaaga
     151  ggatcgtcca gctggtgaag gagagaggga ccgccaaggg gagagactgg
     201  aagaaagacg ttaaaatgat gatagtcctc aaccttgtga gaggcaacaa
     251  gcctgaggcc atgatgaaga agatgtcaga gaaaggtgct ggaattgttg
     301  cccagttaat ctctgtatac cagctcaagg aaggaaaccc tggcagagac
     351  actatcacat tgtctagagt ctctgctgct tttgttcctt ggaccattca
     401  ggcacttagg gtactttctg actccctccc ggtcacaggg acaacaatgg
     451  atgctattgc tggtgtaact tatccgagag ccatgatgca ccctagcttc
     501  gctggtatca ttgacctgga ccttcctaac agggctggtg aagcaattgc
     551  tgatgcacat ggtctgttca tgctagagtt ttctaagact atcaacccat
     601  ctctgagaac caagcagccc aatgagatag cggctacatt tgaaaaacca
     651  aacatggctg ctatgagtgg taggttcttc actagggagg acaaaaagaa
     701  gctcttaatg gctgttggga tactcaatga agaccttgtg ctaacaccag
     751  ccatagttaa gtgtgccgag aagtactgct ctaaggtggg caagtagact
     801  gccaatgtgg ggagggaagg gtaagggtga ataattggtc attgatttgg
     851  gtggggttct aaattggggg gaatgtaggg gggttgggca gccacaaccg
     901  caggctgctg cagggcttgt ccttatcaag ttgctccttt ggggtaggcc
     951  agtcttttgt ccacactgtg gaaagggcat cttccctaaa agattcacta
    1001  ttatgcaaga agtacctgta tgaatcctcg caattcatcc tagccaaacc
    1051  cttagtcaca tcaaccttcc ggggtctttt caccaaatgc aactctaccg
    1101  ggctgacaga aaaataaatg tgaaaccgca gatcactaat cctccgatga
    1151  gcagactttg ccacatgact tgccactcta gcagcctgga ctacacacaa
    1201  ctctcctata aggtcattcc caggtaggtc ctcttttgtg agtccatgct
    1251  tcattccttc taaaagtgtc cttctgtgaa cttctactat ctgatcctca
    1301  attgaagtgt tgaatagtcc agatgccttg accagaagtt ttagatactt
    1351  actcataact aaatcaggtt catcagagag gaaaatatga tcatcaagat
    1401  aatactcaat aaactctaag gaaggcacac ctgttggcca acgcagggct
    1451  gatacgagga agtcaaccct atgtcttttc aagctattaa tagattctcc
    1501  aaagagctct tgaatagtgg gatcatacag tttagttctt tgacctgtta
    1551  ttgaatcata tccaatgaag gcaggaaatt ccctctttga cagaaaatgc
    1601  gacagagttg gtcttgagtc aagcacaact ttgtatttat ccacatatat
    1651  cggaatttca ctctccagta agcagaatct tcttgatggg tcaaactctc
    1701  ccatcctcac attgacatag aaccttggaa atttccgatt cttgtctttt
    1751  gaagactttg gtttcaaaaa aaccagagat gattgcattg ttaggccggc
    1801  ttgtctagac tttatctttt cgcaatacgg gaggtctttg tgt