Sequence of DPV Papaya ringspot virus

Papaya ringspot virus W isolate A7 polyprotein gene, partial cds.

ACC No: JN132415

Dated: 2012-03-16 | Length: 1191 | CRC: -825505384

                
ID   JN132415; SV 1; linear; genomic RNA; STD; VRL; 1191 BP.
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AC   JN132415;
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DT   02-JAN-2012 (Rel. 111, Created)
DT   16-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE   Papaya ringspot virus W isolate A7 polyprotein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus W
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1191
RX   PUBMED; 22160129.
RA   Abdalla O.A., Ali A.;
RT   "Genetic diversity in the 3'-terminal region of papaya ringspot virus
RT   (PRSV-W) isolates from watermelon in Oklahoma";
RL   Arch. Virol. 157(3):405-412(2012).
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RN   [2]
RP   1-1191
RA   Mohammad O., Ali A.;
RT   ;
RL   Submitted (17-JUN-2011) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1191
FT                   /organism="Papaya ringspot virus W"
FT                   /host="watermelon"
FT                   /isolate="A7"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Oklahoma"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:12207"
FT   CDS             <1. .1173
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:G9FIS1"
FT                   /protein_id="AEW91851.1"
FT                   /translation="AAMIESWGYGELTHQIRRFYQWVLEQAPFNELAKQGRAPYVSEVG
FT                   LRRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESRSTDDYQLVCSNNTHVFHQS
FT                   KNEAVDAGLNEKLKEKEKLKEKEKEKQKEKGKDDASDGNDVSTSTKTGERDRDVNVGTS
FT                   GTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVR
FT                   NDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFR
FT                   QIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREA
FT                   HMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1. .309
FT                   /product="NIb protein"
FT   mat_peptide     310. .1170
FT                   /product="coat protein"
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SQ   Sequence 1191 BP; 399 A; 213 C; 296 G; 283 T; 0 other;

jn132415 Length: 1191  16-MAR-2012  Type: N  Check: 7561  ..

       1  gcagcaatga tagagtcatg gggctatggt gagttaacac accagattcg
      51  cagattctac caatgggttc tcgagcaagc tccattcaat gagttagcga
     101  aacaaggaag ggctccatac gtctcggaag ttggattgag aagattatac
     151  acaagtgaac gtggctcaat ggatgaattg gaagcgtata tagataaata
     201  ctttgagcgt gagaggggag actcacccga actactggtg taccatgaat
     251  cgagaagcac tgatgattat cagcttgttt gtagcaacaa tacacacgta
     301  tttcatcagt ccaaaaatga agctgtggat gctggtttga atgaaaagct
     351  caaagaaaaa gaaaaactga aagaaaaaga aaaagaaaaa caaaaagaga
     401  aaggaaaaga cgatgctagt gacggaaatg atgtgtcaac tagcacaaaa
     451  actggagaga gagatagaga tgtcaatgtt gggaccagtg gaactttcac
     501  tgttccaaga attaaatcat ttactgacaa gatgattcta ccaagaatta
     551  agggaaagac tgtccttaac ttaaatcatc ttcttcagta taatccgcaa
     601  caaatcgaca tttctaatac tcgtgccact cagtcacaat ttgagaagtg
     651  gtatgagggg gtgaggaatg attatggcct taatgataat gaaatgcaag
     701  tgatgctaaa tggcttgatg gtctggtgca tcgagaacgg tacgtcccca
     751  gacatatctg gtgtttgggt tatgatggat ggggagaccc aagttgatta
     801  tccaatcaag cctctaattg agcatgctac cccgtcattt aggcaaatta
     851  tggctcactt tagtaacgcg gcagaagcat acattgcaaa gaggaatgct
     901  actgagaggt acatgccgcg gtatggaatc aagagaaatc tgactgacat
     951  tagcctcgct agatacgctt tcgatttcta tgaggttaat tcgaaaacac
    1001  ctgatagggc tcgcgaagct cacatgcaga tgaaggctgc agcgctgcga
    1051  aacactagtc gcagaatgtt tggtatggac ggcagtgtta gtaacaagga
    1101  agaaaacacg gagagacaca cagtggaaga tgtcaataga gacatgcact
    1151  ctctcctggg tatgcgcaac tgaatactcg cgcttgtgtg t