Sequence of DPV Papaya ringspot virus

Papaya ringspot virus W isolate A12 polyprotein gene, partial cds.

ACC No: JN132420

Dated: 2012-03-16 | Length: 1191 | CRC: 709195861

                
ID   JN132420; SV 1; linear; genomic RNA; STD; VRL; 1191 BP.
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AC   JN132420;
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DT   02-JAN-2012 (Rel. 111, Created)
DT   16-MAR-2012 (Rel. 112, Last updated, Version 2)
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DE   Papaya ringspot virus W isolate A12 polyprotein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus W
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-1191
RX   PUBMED; 22160129.
RA   Abdalla O.A., Ali A.;
RT   "Genetic diversity in the 3'-terminal region of papaya ringspot virus
RT   (PRSV-W) isolates from watermelon in Oklahoma";
RL   Arch. Virol. 157(3):405-412(2012).
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RN   [2]
RP   1-1191
RA   Mohammad O., Ali A.;
RT   ;
RL   Submitted (17-JUN-2011) to the INSDC.
RL   Biological Science, University of Tulsa, 800 S Tucker Dr, Tulsa, OK 74104,
RL   USA
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FH   Key             Location/Qualifiers
FH
FT   source          1. .1191
FT                   /organism="Papaya ringspot virus W"
FT                   /host="watermelon"
FT                   /isolate="A12"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Oklahoma"
FT                   /collection_date="2008"
FT                   /db_xref="taxon:12207"
FT   CDS             <1. .1173
FT                   /codon_start=1
FT                   /product="polyprotein"
FT                   /db_xref="UniProtKB/TrEMBL:G9FIS6"
FT                   /protein_id="AEW91856.1"
FT                   /translation="AAMIESWGYSELTHQIRRFYQWVLEQAPFNELAKQGRAPYVSEVG
FT                   LRRLYTSERGSMDELEAYIDKYFERERGDSPELLVYHESKSADDYQLVCSNNTHVFHQS
FT                   KNEAVDAGLNEKLKEKEKQKEKEKEKQKDKEKDDASDGNDVSTSTKTGERDRDVNVGTS
FT                   GTFTVPRIKSFTDKMILPRIKGKTVLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVR
FT                   NDYGLNDNEMQVMLNGLMVWCIENGTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFR
FT                   QIMAHFSNAAEAYIAKRNATERYMPRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREA
FT                   HMQMKAAALRNTSRRMFGMDGSVSNKEENTERHTVEDVNRDMHSLLGMRN"
FT   mat_peptide     <1. .309
FT                   /product="NIb protein"
FT   mat_peptide     310. .1170
FT                   /product="coat protein"
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SQ   Sequence 1191 BP; 405 A; 205 C; 292 G; 289 T; 0 other;

jn132420 Length: 1191  16-MAR-2012  Type: N  Check: 354  ..

       1  gcagcaatga tagagtcatg gggttatagt gagttgacac accagattcg
      51  cagattctac caatgggttc tcgagcaggc tccattcaat gagttagcga
     101  aacaaggaag ggctccatac gtttcggaag ttggattgag aagattgtac
     151  acaagtgaac gcggatcaat ggatgaatta gaagcgtata tagataaata
     201  ctttgagcgt gagaggggag actcacccga actattggta taccacgagt
     251  caaagagcgc tgatgattat caacttgttt gtagcaacaa tacacacgtg
     301  tttcatcagt ccaaaaatga agctgtggat gctggtttga atgaaaagct
     351  caaagaaaaa gaaaaacaaa aagaaaaaga aaaagagaaa caaaaagata
     401  aagaaaaaga cgatgctagt gacggaaatg atgtgtcaac tagcacaaaa
     451  actggagaga gagatagaga cgtcaatgtt gggaccagtg gaactttcac
     501  tgttccaaga atcaaatcat tcactgacaa gatgattcta ccaagaatta
     551  agggaaagac tgtccttaat ttgaatcatc ttcttcagta taatccgcaa
     601  caaattgaca tctctaatac tcgtgccact caatcacaat ttgagaagtg
     651  gtatgaggga gtgaggaatg attatggcct taatgataat gaaatgcaag
     701  tgatgttaaa tggcttgatg gtttggtgta tcgagaatgg tacatctcca
     751  gacatatctg gtgtctgggt tatgatggat ggggaaaccc aagttgatta
     801  tccaatcaag cctttaattg agcatgctac tccgtcattt aggcaaatta
     851  tggctcactt tagtaacgcg gcagaggcat acattgcaaa gagaaatgct
     901  actgagaggt acatgccgcg gtatggaatc aagagaaatt tgactgacat
     951  tagcctcgct agatacgctt tcgatttcta tgaggtgaat tcgaaaacac
    1001  ctgatagggc tcgcgaagct cacatgcaga tgaaagctgc agcgctgcga
    1051  aacactagtc gcagaatgtt tggtatggac ggcagtgtta gtaacaagga
    1101  agaaaacacg gagagacaca cagtggaaga tgtcaataga gacatgcact
    1151  ctctcctggg tatgcgtaac tgaatactcg cgcttgtgtg t